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Author: Rob Patro

Rankings

  • All-time downloads: 36,247 (rank: 1,007 out of 365,827)
  • Categories:
    • bioinformatics: 36,247 (rank: 71 out of 31,540)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 21,413 times
  • Download rankings, all-time:
    • Site-wide: 61 out of 85,030
    • In bioinformatics: 5 out of 8,141
  • Year to date:
    • Site-wide: 498 out of 85,030
  • Since beginning of last month:
    • Site-wide: 1,190 out of 85,030

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 5,125 times
  • Download rankings, all-time:
    • Site-wide: 658 out of 85,030
    • In bioinformatics: 113 out of 8,141
  • Year to date:
    • Site-wide: 3,611 out of 85,030
  • Since beginning of last month:
    • Site-wide: 3,300 out of 85,030

Mantis: A Fast, Small, and Exact Large-Scale Sequence Search Index

bioinformatics more details view paper
  • Downloaded 2,535 times
  • Download rankings, all-time:
    • Site-wide: 2,308 out of 85,030
    • In bioinformatics: 423 out of 8,141
  • Year to date:
    • Site-wide: 30,764 out of 85,030
  • Since beginning of last month:
    • Site-wide: 47,601 out of 85,030

TransRate: reference free quality assessment of de-novo transcriptome assemblies

bioinformatics more details view paper
  • Downloaded 2,269 times
  • Download rankings, all-time:
    • Site-wide: 2,792 out of 85,030
    • In bioinformatics: 514 out of 8,141
  • Year to date:
    • Site-wide: 56,481 out of 85,030
  • Since beginning of last month:
    • Site-wide: 33,073 out of 85,030

Squeakr: An Exact and Approximate k-mer Counting System

bioinformatics more details view paper
  • Downloaded 1,588 times
  • Download rankings, all-time:
    • Site-wide: 5,043 out of 85,030
    • In bioinformatics: 926 out of 8,141
  • Year to date:
    • Site-wide: 48,122 out of 85,030
  • Since beginning of last month:
    • Site-wide: 46,783 out of 85,030

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,318 times
  • Download rankings, all-time:
    • Site-wide: 6,875 out of 85,030
    • In bioinformatics: 1,229 out of 8,141
  • Year to date:
    • Site-wide: 27,849 out of 85,030
  • Since beginning of last month:
    • Site-wide: 36,859 out of 85,030

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 13,087 out of 85,030
    • In bioinformatics: 2,090 out of 8,141
  • Year to date:
    • Site-wide: 59,482 out of 85,030
  • Since beginning of last month:
    • Site-wide: 80,676 out of 85,030

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 611 times
  • Download rankings, all-time:
    • Site-wide: 22,792 out of 85,030
    • In bioinformatics: 3,245 out of 8,141
  • Year to date:
    • Site-wide: 80,899 out of 85,030
  • Since beginning of last month:
    • Site-wide: 75,508 out of 85,030

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 29,420 out of 85,030
    • In bioinformatics: 3,894 out of 8,141
  • Year to date:
    • Site-wide: 52,039 out of 85,030
  • Since beginning of last month:
    • Site-wide: 67,335 out of 85,030

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