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Author: P. C. Dorrestein

  • ORCiD: http://orcid.org/0000-0002-3003-1030
  • Most recently observed institution: Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, USA 3

Rankings

  • All-time downloads: 27,999 (rank: 1,583 out of 380,464)
  • Categories:
    • biochemistry: 2,255 (rank: 738 out of 17,392)
    • bioinformatics: 15,537 (rank: 298 out of 32,581)
    • evolutionary biology: 505 (rank: 9,886 (tie) out of 19,505)
    • microbiology: 7,951 (rank: 865 out of 42,558)
    • pharmacology and toxicology: 418 (rank: 1,774 (tie) out of 5,091)
    • plant biology: 630 (rank: 4,413 (tie) out of 14,498)
    • synthetic biology: 403 (rank: 2,926 (tie) out of 3,864)
    • systems biology: 300 (rank: 8,498 (tie) out of 11,214)

Downloads per author, site-wide

Preprints

Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas disease

biochemistry more details view paper

No bioRxiv download data for this paper yet.

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

bioinformatics more details view paper
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    • In bioinformatics: 91 out of 8,390
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    • Site-wide: 9,615 out of 88,741
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    • Site-wide: 36,414 out of 88,741

American Gut: an Open Platform for Citizen-Science Microbiome Research

microbiology more details view paper
  • Downloaded 3,314 times
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    • In microbiology: 133 out of 7,640
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Feature-based Molecular Networking in the GNPS Analysis Environment

bioinformatics more details view paper
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    • In bioinformatics: 489 out of 8,390
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    • Site-wide: 757 out of 88,741
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    • Site-wide: 1,102 out of 88,741

Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids

microbiology more details view paper
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    • In microbiology: 450 out of 7,640
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    • Site-wide: 62,465 out of 88,741

Identification of the bacterial biosynthetic gene clusters of the oral microbiome illuminates the unexplored social language of bacteria during health and disease

microbiology more details view paper
  • Downloaded 1,211 times
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    • In microbiology: 491 out of 7,640
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Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

bioinformatics more details view paper
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    • In bioinformatics: 1,576 out of 8,390
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    • Site-wide: 3,233 out of 88,741

Cutibacterium acnes antibiotic production shapes niche competition in the human skin microbiome

microbiology more details view paper
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    • In microbiology: 629 out of 7,640
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    • Site-wide: 13,444 out of 88,741

Algorithmic Learning for Auto-deconvolution of GC-MS Data to Enable Molecular Networking within GNPS.

bioinformatics more details view paper
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    • In bioinformatics: 1,999 out of 8,390
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    • Site-wide: 1,510 out of 88,741
  • Since beginning of last month:
    • Site-wide: 6,073 out of 88,741

MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools

biochemistry more details view paper
  • Downloaded 899 times
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    • Site-wide: 13,450 out of 88,741
    • In biochemistry: 317 out of 2,968
  • Year to date:
    • Site-wide: 17,202 out of 88,741
  • Since beginning of last month:
    • Site-wide: 25,387 out of 88,741

Classes for the masses: Systematic classification of unknowns using fragmentation spectra

bioinformatics more details view paper
  • Downloaded 895 times
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    • Site-wide: 13,533 out of 88,741
    • In bioinformatics: 2,129 out of 8,390
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    • Site-wide: 1,650 out of 88,741
  • Since beginning of last month:
    • Site-wide: 5,084 out of 88,741

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

bioinformatics more details view paper
  • Downloaded 751 times
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    • Site-wide: 17,776 out of 88,741
    • In bioinformatics: 2,671 out of 8,390
  • Year to date:
    • Site-wide: 6,353 out of 88,741
  • Since beginning of last month:
    • Site-wide: 5,161 out of 88,741

Implementations of the chemical structural and compositional similarity metric in R and Python

bioinformatics more details view paper
  • Downloaded 751 times
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    • Site-wide: 17,762 out of 88,741
    • In bioinformatics: 2,670 out of 8,390
  • Year to date:
    • Site-wide: 39,638 out of 88,741
  • Since beginning of last month:
    • Site-wide: 39,341 out of 88,741

De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments

bioinformatics more details view paper
  • Downloaded 742 times
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    • Site-wide: 18,066 out of 88,741
    • In bioinformatics: 2,706 out of 8,390
  • Year to date:
    • Site-wide: 30,910 out of 88,741
  • Since beginning of last month:
    • Site-wide: 64,643 out of 88,741

Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages

biochemistry more details view paper
  • Downloaded 733 times
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    • Site-wide: 18,380 out of 88,741
    • In biochemistry: 465 out of 2,968
  • Year to date:
    • Site-wide: 43,451 out of 88,741
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    • Site-wide: 26,519 out of 88,741

Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

plant biology more details view paper
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    • In plant biology: 541 out of 2,730
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    • Site-wide: 51,074 out of 88,741
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    • Site-wide: 63,316 out of 88,741

ZODIAC: database-independent molecular formula annotation using Gibbs sampling reveals unknown small molecules

bioinformatics more details view paper
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    • In bioinformatics: 3,595 out of 8,390
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    • Site-wide: 9,976 out of 88,741
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    • Site-wide: 16,245 out of 88,741

Native Electrospray-based Metabolomics Enables the Detection of Metal-binding Compounds

biochemistry more details view paper
  • Downloaded 538 times
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    • Site-wide: 28,308 out of 88,741
    • In biochemistry: 769 out of 2,968
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    • Site-wide: 16,022 out of 88,741
  • Since beginning of last month:
    • Site-wide: 10,267 out of 88,741

Extracellular matrix components are required to protect Bacillus subtilis colonies from T6SS-dependent Pseudomonas invasion and modulate co-colonization of plant

microbiology more details view paper
  • Downloaded 537 times
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    • Site-wide: 28,345 out of 88,741
    • In microbiology: 1,836 out of 7,640
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    • Site-wide: 47,793 out of 88,741
  • Since beginning of last month:
    • Site-wide: 69,654 out of 88,741

Did a plant-herbivore arms race drive chemical diversity in Euphorbia?

evolutionary biology more details view paper
  • Downloaded 505 times
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    • Site-wide: 30,680 out of 88,741
    • In evolutionary biology: 2,071 out of 5,430
  • Year to date:
    • Site-wide: 56,951 out of 88,741
  • Since beginning of last month:
    • Site-wide: 66,867 out of 88,741

Revisiting microbe-metabolite interactions: doing better than random

bioinformatics more details view paper
  • Downloaded 478 times
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    • Site-wide: 32,836 out of 88,741
    • In bioinformatics: 4,197 out of 8,390
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    • Site-wide: 13,968 out of 88,741
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    • Site-wide: 16,067 out of 88,741

Fungal-bacterial interaction selects for quorum sensing mutants and a metabolic shift towards the production of natural antifungal compounds

microbiology more details view paper
  • Downloaded 472 times
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    • Site-wide: 33,326 out of 88,741
    • In microbiology: 2,219 out of 7,640
  • Year to date:
    • Site-wide: 23,010 out of 88,741
  • Since beginning of last month:
    • Site-wide: 34,358 out of 88,741

Interactive MS/MS Visualization with the Metabolomics Spectrum Resolver Web Service

bioinformatics more details view paper
  • Downloaded 431 times
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    • Site-wide: 37,084 out of 88,741
    • In bioinformatics: 4,570 out of 8,390
  • Year to date:
    • Site-wide: 4,837 out of 88,741
  • Since beginning of last month:
    • Site-wide: 13,575 out of 88,741

Preprint: Environmentally-Friendly Workflow Based on Supercritical Fluid Chromatography and Tandem Mass Spectrometry Molecular Networking For the Discovery of Potent Anti-Viral Leads From Plants

pharmacology and toxicology more details view paper
  • Downloaded 418 times
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    • In pharmacology and toxicology: 235 out of 808
  • Year to date:
    • Site-wide: 57,891 out of 88,741
  • Since beginning of last month:
    • Site-wide: 75,240 out of 88,741

Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

synthetic biology more details view paper
  • Downloaded 403 times
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    • Site-wide: 39,867 out of 88,741
    • In synthetic biology: 563 out of 829
  • Year to date:
    • Site-wide: 47,603 out of 88,741
  • Since beginning of last month:
    • Site-wide: 29,121 out of 88,741

Ion Identity Molecular Networking in the GNPS Environment

bioinformatics more details view paper
  • Downloaded 399 times
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    • Site-wide: 40,271 out of 88,741
    • In bioinformatics: 4,860 out of 8,390
  • Year to date:
    • Site-wide: 5,433 out of 88,741
  • Since beginning of last month:
    • Site-wide: 4,302 out of 88,741

Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs

systems biology more details view paper
  • Downloaded 300 times
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    • Site-wide: 52,787 out of 88,741
    • In systems biology: 1,543 out of 2,302
  • Year to date:
    • Site-wide: 33,905 out of 88,741
  • Since beginning of last month:
    • Site-wide: 44,825 out of 88,741

Protocol for Community-created Public MS/MS Reference Library Within the GNPS Infrastructure

bioinformatics more details view paper
  • Downloaded 264 times
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    • In bioinformatics: 6,267 out of 8,390
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    • Site-wide: 32,702 out of 88,741
  • Since beginning of last month:
    • Site-wide: 54,434 out of 88,741

Metabolite profiling of experimental cutaneous leishmaniasis lesions demonstrates significant perturbations in tissue phospholipids

biochemistry more details view paper
  • Downloaded 85 times
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    • Site-wide: 84,013 out of 88,741
    • In biochemistry: 2,739 out of 2,968
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    • Site-wide: 45,008 out of 88,741
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    • Site-wide: 21,056 out of 88,741

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

microbiology more details view paper
  • Downloaded 53 times
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    • Site-wide: 86,081 out of 88,741
    • In microbiology: 7,314 out of 7,640
  • Year to date:
    • Site-wide: 68,924 out of 88,741
  • Since beginning of last month:
    • Site-wide: 27,744 out of 88,741

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

microbiology more details view paper
  • Downloaded 50 times
  • Download rankings, all-time:
    • Site-wide: 86,239 out of 88,741
    • In microbiology: 7,339 out of 7,640
  • Year to date:
    • Site-wide: 71,524 out of 88,741
  • Since beginning of last month:
    • Site-wide: 27,716 out of 88,741

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