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Author: Jim R. Hughes

Rankings

  • All-time downloads: 25,475 (rank: 8,788 )
  • Categories:
    • bioinformatics: 4,171 (rank: 3,679 )
    • cell biology: 741 (rank: 16,492 (tie) )
    • developmental biology: 2,242 (rank: 1,686 (tie) )
    • genetics: 2,785 (rank: 7,568 (tie) )
    • genomics: 10,278 (rank: 2,167 )
    • infectious diseases: 3,494 (rank: 13,509 (tie) )
    • molecular biology: 727 (rank: 11,206 (tie) )
    • systems biology: 1,037 (rank: 5,157 (tie) )

Downloads per author, site-wide

Preprints

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

infectious diseases more details view paper
  • Downloaded 3,494 times
  • Download rankings, all-time:
    • Site-wide: 4,379
    • In infectious diseases: 880
  • Year to date:
    • Site-wide: 927
  • Since beginning of last month:
    • Site-wide: 846

DeepC: Predicting chromatin interactions using megabase scaled deep neural networks and transfer learning.

genomics more details view paper
  • Downloaded 3,441 times
  • Download rankings, all-time:
    • Site-wide: 4,482
    • In genomics: 446
  • Year to date:
    • Site-wide: 9,115
  • Since beginning of last month:
    • Site-wide: 13,497

An integrated platform to systematically identify causal variants and genes for polygenic human traits

genetics more details view paper
  • Downloaded 2,292 times
  • Download rankings, all-time:
    • Site-wide: 8,125
    • In genetics: 346
  • Year to date:
    • Site-wide: 14,389
  • Since beginning of last month:
    • Site-wide: 10,946

Enhancers predominantly regulate gene expression in vivo via transcription initiation.

genomics more details view paper
  • Downloaded 2,270 times
  • Download rankings, all-time:
    • Site-wide: 8,246
    • In genomics: 832
  • Year to date:
    • Site-wide: 20,760
  • Since beginning of last month:
    • Site-wide: 78,921

Reconstruction of the global neural crest gene regulatory network in vivo

developmental biology more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 15,488
    • In developmental biology: 231
  • Year to date:
    • Site-wide: 70,892
  • Since beginning of last month:
    • Site-wide: 123,725

NGseqBasic - a single-command UNIX tool for ATAC-seq, DNaseI-seq, Cut-and-Run, and ChIP-seq data mapping, high-resolution visualisation, and quality control

bioinformatics more details view paper
  • Downloaded 1,472 times
  • Download rankings, all-time:
    • Site-wide: 15,817
    • In bioinformatics: 1,784
  • Year to date:
    • Site-wide: 54,846
  • Since beginning of last month:
    • Site-wide: 65,137

LanceOtron: a deep learning peak caller for ATAC-seq, ChIP-seq, and DNase-seq

bioinformatics more details view paper
  • Downloaded 1,430 times
  • Download rankings, all-time:
    • Site-wide: 16,564
    • In bioinformatics: 1,868
  • Year to date:
    • Site-wide: 3,130
  • Since beginning of last month:
    • Site-wide: 9,218

A revised model for promoter competition based on multi-way chromatin interactions

genomics more details view paper
  • Downloaded 1,366 times
  • Download rankings, all-time:
    • Site-wide: 17,742
    • In genomics: 1,699
  • Year to date:
    • Site-wide: 158,886
  • Since beginning of last month:
    • Site-wide: 144,835

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

genomics more details view paper
  • Downloaded 1,063 times
  • Download rankings, all-time:
    • Site-wide: 25,944
    • In genomics: 2,342
  • Year to date:
    • Site-wide: 60,166
  • Since beginning of last month:
    • Site-wide: 58,506

Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis

systems biology more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 26,930
    • In systems biology: 519
  • Year to date:
    • Site-wide: 43,108
  • Since beginning of last month:
    • Site-wide: 46,680

Targeted high-resolution chromosome conformation capture at genome-wide scale.

genomics more details view paper
  • Downloaded 881 times
  • Download rankings, all-time:
    • Site-wide: 34,208
    • In genomics: 2,876
  • Year to date:
    • Site-wide: 53,589
  • Since beginning of last month:
    • Site-wide: 67,826

CaptureCompendium: a comprehensive toolkit for 3C analysis.

bioinformatics more details view paper
  • Downloaded 864 times
  • Download rankings, all-time:
    • Site-wide: 35,101
    • In bioinformatics: 3,798
  • Year to date:
    • Site-wide: 17,439
  • Since beginning of last month:
    • Site-wide: 41,927

Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development

developmental biology more details view paper
  • Downloaded 751 times
  • Download rankings, all-time:
    • Site-wide: 42,994
    • In developmental biology: 923
  • Year to date:
    • Site-wide: 8,263
  • Since beginning of last month:
    • Site-wide: 1,875

A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions

cell biology more details view paper
  • Downloaded 741 times
  • Download rankings, all-time:
    • Site-wide: 43,871
    • In cell biology: 1,786
  • Year to date:
    • Site-wide: 159,365
  • Since beginning of last month:
    • Site-wide: 149,351

DOT1L inhibition reveals a distinct class of enhancers dependent on H3K79 methylation

molecular biology more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 45,057
    • In molecular biology: 1,267
  • Year to date:
    • Site-wide: 137,951
  • Since beginning of last month:
    • Site-wide: 146,560

A functional overlap between actively transcribed genes and chromatin boundary elements

genomics more details view paper
  • Downloaded 635 times
  • Download rankings, all-time:
    • Site-wide: 54,221
    • In genomics: 4,043
  • Year to date:
    • Site-wide: 47,873
  • Since beginning of last month:
    • Site-wide: 40,131

Modelling erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I)

genetics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 73,821
    • In genetics: 3,133
  • Year to date:
    • Site-wide: 97,651
  • Since beginning of last month:
    • Site-wide: 116,683

Multi Locus View : An Extensible Web Based Tool for the Analysis of Genomic Data

bioinformatics more details view paper
  • Downloaded 405 times
  • Download rankings, all-time:
    • Site-wide: 90,592
    • In bioinformatics: 7,982
  • Year to date:
    • Site-wide: 75,435
  • Since beginning of last month:
    • Site-wide: 84,997

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

genomics more details view paper
  • Downloaded 345 times
  • Download rankings, all-time:
    • Site-wide: 104,526
    • In genomics: 6,225
  • Year to date:
    • Site-wide: 136,923
  • Since beginning of last month:
    • Site-wide: 125,289

Chromatin interaction maps identify Wnt responsive cis-regulatory elements coordinating Paupar-Pax6 expression in neuronal cells

genomics more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 121,895
    • In genomics: 6,781
  • Year to date:
    • Site-wide: 37,498
  • Since beginning of last month:
    • Site-wide: 9,483

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