Author: Iman Hajirasouliha

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Preprints

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

• Downloaded 16,863 times
• Download rankings, all-time:
  • Site-wide: 387
  • In molecular biology: 5
• Year to date:
  • Site-wide: 1,074
• Since beginning of last month:
  • Site-wide: 1,174

Breast Cancer Histopathological Image Classification: A Deep Learning Approach

• Downloaded 7,447 times
• Download rankings, all-time:
  • Site-wide: 1,098
  • In bioinformatics: 67
• Year to date:
  • Site-wide: 4,814
• Since beginning of last month:
  • Site-wide: 3,819

A robust benchmark for germline structural variant detection

• Downloaded 5,670 times
• Download rankings, all-time:
  • Site-wide: 1,581
  • In genomics: 150
• Year to date:
  • Site-wide: 4,772
• Since beginning of last month:
  • Site-wide: 4,541

Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

• Downloaded 4,452 times
• Download rankings, all-time:
  • Site-wide: 2,206
  • In microbiology: 159
• Year to date:
  • Site-wide: 3,979
• Since beginning of last month:
  • Site-wide: 4,555

Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

• Downloaded 2,799 times
• Download rankings, all-time:
  • Site-wide: 4,260
  • In bioinformatics: 461
• Year to date:
  • Site-wide: 88,268
• Since beginning of last month:
  • Site-wide: 81,215

Robust Automated Assessment of Human Blastocyst Quality using Deep Learning

• Downloaded 2,364 times
• Download rankings, all-time:
  • Site-wide: 5,482
  • In bioinformatics: 633
• Year to date:
  • Site-wide: 22,967
• Since beginning of last month:
  • Site-wide: 16,009

Minerva: An Alignment and Reference Free Approach to Deconvolve Linked-Reads for Metagenomics

• Downloaded 1,380 times
• Download rankings, all-time:
  • Site-wide: 12,179
  • In bioinformatics: 1,504
• Year to date:
  • Site-wide: 56,580
• Since beginning of last month:
  • Site-wide: 74,422

Inferring Cancer Progression from Single-cell Sequencing while Allowing Mutation Losses

• Downloaded 1,360 times
• Download rankings, all-time:
  • Site-wide: 12,421
  • In bioinformatics: 1,530
• Year to date:
  • Site-wide: 77,885
• Since beginning of last month:
  • Site-wide: 77,533

Building an International Consortium for Tracking Coronavirus Health Status

• Downloaded 1,231 times
• Download rankings, all-time:
  • Site-wide: 14,462
  • In infectious diseases: 1,374
• Year to date:
  • Site-wide: 65,997
• Since beginning of last month:
  • Site-wide: 35,503

Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging

• Downloaded 1,118 times
• Download rankings, all-time:
  • Site-wide: 16,725
  • In radiology and imaging: 38
• Year to date:
  • Site-wide: 1,440
• Since beginning of last month:
  • Site-wide: 524

Detection and assembly of novel sequence insertions using Linked-Read technology

• Downloaded 849 times
• Download rankings, all-time:
  • Site-wide: 24,983
  • In bioinformatics: 2,968
• Year to date:
  • Site-wide: 33,649
• Since beginning of last month:
  • Site-wide: 26,042

PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

• Downloaded 756 times
• Download rankings, all-time:
  • Site-wide: 29,304
  • In bioinformatics: 3,365
• Year to date:
  • Site-wide: 95,242
• Since beginning of last month:
  • Site-wide: 74,328

Characterization of segmental duplications and large inversions using Linked-Reads

• Downloaded 738 times
• Download rankings, all-time:
  • Site-wide: 30,277
  • In bioinformatics: 3,461
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: None

Novel Algorithms for the Taxonomic Classification of Metagenomic Linked Reads

• Downloaded 683 times
• Download rankings, all-time:
  • Site-wide: 33,739
  • In bioinformatics: 3,809
• Year to date:
  • Site-wide: 62,175
• Since beginning of last month:
  • Site-wide: 62,650

gpps: An ILP-based approach for inferring cancer progression with mutation losses from single cell data

• Downloaded 497 times
• Download rankings, all-time:
  • Site-wide: 50,137
  • In cancer biology: 1,389
• Year to date:
  • Site-wide: 116,736
• Since beginning of last month:
  • Site-wide: 96,398

coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies

• Downloaded 127 times
• Download rankings, all-time:
  • Site-wide: 116,478
  • In bioinformatics: 9,543
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: None