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Author: Joseph Hughes

  • ORCiD: http://orcid.org/0000-0003-2556-2563
  • Most recently observed institution: University of Glasgow Centre for Virus Research: MRC-University of Glasgow Centre for Virus Research

Rankings

  • All-time downloads: 37,241 (rank: 5,486 )
  • Categories:
    • bioinformatics: 2,640 (rank: 6,436 (tie) )
    • epidemiology: 1,269 (rank: 10,324 (tie) )
    • evolutionary biology: 6,587 (rank: 484 )
    • immunology: 160 (rank: 39,825 (tie) )
    • infectious diseases: 10,863 (rank: 5,594 )
    • microbiology: 15,722 (rank: 1,207 )

Downloads per author, site-wide

Preprints

The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity

microbiology more details view paper
  • Downloaded 14,673 times
  • Download rankings, all-time:
    • Site-wide: 658
    • In microbiology: 75
  • Year to date:
    • Site-wide: 831
  • Since beginning of last month:
    • Site-wide: 13,303

Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence

infectious diseases more details view paper
  • Downloaded 8,844 times
  • Download rankings, all-time:
    • Site-wide: 1,247
    • In infectious diseases: 381
  • Year to date:
    • Site-wide: 15,856
  • Since beginning of last month:
    • Site-wide: 27,123

Exploring the natural origins of SARS-CoV-2 in the light of recombination

evolutionary biology more details view paper
  • Downloaded 5,985 times
  • Download rankings, all-time:
    • Site-wide: 2,082
    • In evolutionary biology: 26
  • Year to date:
    • Site-wide: 507
  • Since beginning of last month:
    • Site-wide: 2,754

GLUE: A flexible software system for virus sequence data

bioinformatics more details view paper
  • Downloaded 1,109 times
  • Download rankings, all-time:
    • Site-wide: 24,310
    • In bioinformatics: 2,731
  • Year to date:
    • Site-wide: 130,741
  • Since beginning of last month:
    • Site-wide: 150,069

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

epidemiology more details view paper
  • Downloaded 835 times
  • Download rankings, all-time:
    • Site-wide: 36,939
    • In epidemiology: 1,934
  • Year to date:
    • Site-wide: 7,019
  • Since beginning of last month:
    • Site-wide: 51,647

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

infectious diseases more details view paper
  • Downloaded 743 times
  • Download rankings, all-time:
    • Site-wide: 43,769
    • In infectious diseases: 3,088
  • Year to date:
    • Site-wide: 15,373
  • Since beginning of last month:
    • Site-wide: 20,813

Remdesivir induced viral RNA and subgenomic RNA suppression, and evolution of viral variants in SARS-CoV-2 infected patients.

infectious diseases more details view paper
  • Downloaded 692 times
  • Download rankings, all-time:
    • Site-wide: 48,304
    • In infectious diseases: 3,250
  • Year to date:
    • Site-wide: 22,524
  • Since beginning of last month:
    • Site-wide: 38,863

Human Cytomegalovirus Genomes Sequenced Directly from Clinical Material: Variation, Multiple-Strain Infection, Recombination and Mutation

microbiology more details view paper
  • Downloaded 616 times
  • Download rankings, all-time:
    • Site-wide: 56,501
    • In microbiology: 3,500
  • Year to date:
    • Site-wide: 126,072
  • Since beginning of last month:
    • Site-wide: 97,204

Global genetic diversity of small ruminant lentiviruses, and a hypothesis regarding their pandemic spread.

evolutionary biology more details view paper
  • Downloaded 602 times
  • Download rankings, all-time:
    • Site-wide: 58,112
    • In evolutionary biology: 2,858
  • Year to date:
    • Site-wide: 94,814
  • Since beginning of last month:
    • Site-wide: 93,001

The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease

epidemiology more details view paper
  • Downloaded 434 times
  • Download rankings, all-time:
    • Site-wide: 84,891
    • In epidemiology: 3,670
  • Year to date:
    • Site-wide: 19,483
  • Since beginning of last month:
    • Site-wide: 27,983

TRIM69 inhibits Vesicular Stomatitis Indiana Virus (VSIV)

microbiology more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 85,045
    • In microbiology: 5,686
  • Year to date:
    • Site-wide: 128,705
  • Since beginning of last month:
    • Site-wide: 143,107

Quantifying and cataloguing unknown sequences within human microbiomes

bioinformatics more details view paper
  • Downloaded 416 times
  • Download rankings, all-time:
    • Site-wide: 88,504
    • In bioinformatics: 7,848
  • Year to date:
    • Site-wide: 20,854
  • Since beginning of last month:
    • Site-wide: 55,061

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 92,482
    • In bioinformatics: 8,107
  • Year to date:
    • Site-wide: 162,207
  • Since beginning of last month:
    • Site-wide: 162,252

SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men

infectious diseases more details view paper
  • Downloaded 381 times
  • Download rankings, all-time:
    • Site-wide: 96,103
    • In infectious diseases: 4,573
  • Year to date:
    • Site-wide: 23,803
  • Since beginning of last month:
    • Site-wide: 84,712

Database-integrated genome screening (DIGS): exploring genomes heuristically using sequence similarity search tools and a relational database.

bioinformatics more details view paper
  • Downloaded 368 times
  • Download rankings, all-time:
    • Site-wide: 99,001
    • In bioinformatics: 8,528
  • Year to date:
    • Site-wide: 127,604
  • Since beginning of last month:
    • Site-wide: 117,418

Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses

bioinformatics more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 103,376
    • In bioinformatics: 8,786
  • Year to date:
    • Site-wide: 149,581
  • Since beginning of last month:
    • Site-wide: 156,594

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface

infectious diseases more details view paper
  • Downloaded 203 times
  • Download rankings, all-time:
    • Site-wide: 141,080
    • In infectious diseases: 5,842
  • Year to date:
    • Site-wide: 56,272
  • Since beginning of last month:
    • Site-wide: 132,182

Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning

immunology more details view paper
  • Downloaded 160 times
  • Download rankings, all-time:
    • Site-wide: 150,538
    • In immunology: 4,577
  • Year to date:
    • Site-wide: 73,759
  • Since beginning of last month:
    • Site-wide: 6,940

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