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Author: Maxwell W Libbrecht

Rankings

  • All-time downloads: 12,104 (rank: 27,679 (tie) )
  • Categories:
    • bioinformatics: 6,584 (rank: 2,436 (tie) )
    • epidemiology: 447 (rank: 27,561 (tie) )
    • genomics: 4,693 (rank: 6,805 (tie) )

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Preprints

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

genomics more details view paper
  • Downloaded 2,680 times
  • Download rankings, all-time:
    • Site-wide: 8,373
    • In genomics: 780
  • Year to date:
    • Site-wide: 103,041
  • Since beginning of last month:
    • Site-wide: 114,824

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression

genomics more details view paper
  • Downloaded 1,589 times
  • Download rankings, all-time:
    • Site-wide: 18,517
    • In genomics: 1,623
  • Year to date:
    • Site-wide: 116,915
  • Since beginning of last month:
    • Site-wide: 181,750

PREDICTD: PaRallel Epigenomics Data Imputation With Cloud-based Tensor Decomposition

bioinformatics more details view paper
  • Downloaded 1,057 times
  • Download rankings, all-time:
    • Site-wide: 35,216
    • In bioinformatics: 3,590
  • Year to date:
    • Site-wide: 186,745
  • Since beginning of last month:
    • Site-wide: 193,428

Choosing panels of genomics assays using submodular optimization

bioinformatics more details view paper
  • Downloaded 896 times
  • Download rankings, all-time:
    • Site-wide: 45,285
    • In bioinformatics: 4,443
  • Year to date:
    • Site-wide: 174,519
  • Since beginning of last month:
    • Site-wide: 182,058

VSS: Variance-stabilized signals for sequencing-based genomic signals

bioinformatics more details view paper
  • Downloaded 787 times
  • Download rankings, all-time:
    • Site-wide: 55,102
    • In bioinformatics: 5,338
  • Year to date:
    • Site-wide: 83,817
  • Since beginning of last month:
    • Site-wide: 109,404

An interpretable classification method for predicting drug resistance in M. tuberculosis

bioinformatics more details view paper
  • Downloaded 717 times
  • Download rankings, all-time:
    • Site-wide: 63,130
    • In bioinformatics: 5,858
  • Year to date:
    • Site-wide: 112,169
  • Since beginning of last month:
    • Site-wide: 174,309

Semi-supervised segmentation and genome annotation

bioinformatics more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 66,899
    • In bioinformatics: 6,279
  • Year to date:
    • Site-wide: 81,957
  • Since beginning of last month:
    • Site-wide: 109,399

Continuous chromatin state feature annotation of the human epigenome

bioinformatics more details view paper
  • Downloaded 673 times
  • Download rankings, all-time:
    • Site-wide: 69,090
    • In bioinformatics: 6,406
  • Year to date:
    • Site-wide: 124,994
  • Since beginning of last month:
    • Site-wide: 74,330

Segway 2.0: Gaussian mixture models and minibatch training

bioinformatics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 71,536
    • In bioinformatics: 6,528
  • Year to date:
    • Site-wide: 181,822
  • Since beginning of last month:
    • Site-wide: 121,097

SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data

epidemiology more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 108,181
    • In epidemiology: 4,545
  • Year to date:
    • Site-wide: 52,811
  • Since beginning of last month:
    • Site-wide: 179,194

Geographic heterogeneity impacts drug resistance predictions in Mycobacterium tuberculosis

bioinformatics more details view paper
  • Downloaded 461 times
  • Download rankings, all-time:
    • Site-wide: 109,159
    • In bioinformatics: 9,272
  • Year to date:
    • Site-wide: 80,007
  • Since beginning of last month:
    • Site-wide: 41,935

Hi-C-LSTM: Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation

genomics more details view paper
  • Downloaded 404 times
  • Download rankings, all-time:
    • Site-wide: 123,644
    • In genomics: 7,058
  • Year to date:
    • Site-wide: 54,008
  • Since beginning of last month:
    • Site-wide: 53,934

Latent representation of the human pan-celltype epigenome through a deep recurrent neural network

bioinformatics more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 124,418
    • In bioinformatics: 9,602
  • Year to date:
    • Site-wide: 62,321
  • Since beginning of last month:
    • Site-wide: None

SigTools: Exploratory Visualization for Genomic Signals

bioinformatics more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 143,134
    • In bioinformatics: 11,239
  • Year to date:
    • Site-wide: 102,033
  • Since beginning of last month:
    • Site-wide: 98,990

Integrative chromatin domain annotation throughgraph embedding of Hi-C data

genomics more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 192,482
    • In genomics: 8,895
  • Year to date:
    • Site-wide: 64,738
  • Since beginning of last month:
    • Site-wide: 183,702

VSS-Hi-C: Variance-stabilized signals for chromatin 3D contacts

bioinformatics more details view paper
  • Downloaded 144 times
  • Download rankings, all-time:
    • Site-wide: 193,438
    • In bioinformatics: 13,836
  • Year to date:
    • Site-wide: 165,543
  • Since beginning of last month:
    • Site-wide: 179,123

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