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Author: Yuchen Yang

  • Most recently observed institution: University of Massachusetts Worcester

Rankings

  • All-time downloads: 15,497 (rank: 14,116 )
  • Categories:
    • bioinformatics: 7,646 (rank: 1,436 (tie) )
    • biophysics: 2,172 (rank: 2,020 (tie) )
    • cell biology: 98 (rank: 42,643 (tie) )
    • genetics: 4,770 (rank: 4,060 (tie) )
    • genomics: 811 (rank: 28,046 (tie) )

Downloads per author, site-wide

Preprints

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 2,934 times
  • Download rankings, all-time:
    • Site-wide: 5,093
    • In bioinformatics: 495
  • Year to date:
    • Site-wide: 39,865
  • Since beginning of last month:
    • Site-wide: 27,209

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 2,478 times
  • Download rankings, all-time:
    • Site-wide: 6,518
    • In genetics: 281
  • Year to date:
    • Site-wide: 10,893
  • Since beginning of last month:
    • Site-wide: 63,973

Structures of outer-arm dynein array on microtubule doublet reveal a motor coordination mechanism

biophysics more details view paper
  • Downloaded 2,172 times
  • Download rankings, all-time:
    • Site-wide: 7,919
    • In biophysics: 149
  • Year to date:
    • Site-wide: 4,617
  • Since beginning of last month:
    • Site-wide: 60,191

SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

bioinformatics more details view paper
  • Downloaded 1,308 times
  • Download rankings, all-time:
    • Site-wide: 16,782
    • In bioinformatics: 1,946
  • Year to date:
    • Site-wide: 46,364
  • Since beginning of last month:
    • Site-wide: 123,041

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,187 times
  • Download rankings, all-time:
    • Site-wide: 19,389
    • In bioinformatics: 2,220
  • Year to date:
    • Site-wide: 106,509
  • Since beginning of last month:
    • Site-wide: None

RNA-silencing induces target gene relocalization toward a specialized nuage domain

genetics more details view paper
  • Downloaded 882 times
  • Download rankings, all-time:
    • Site-wide: 29,866
    • In genetics: 1,361
  • Year to date:
    • Site-wide: 4,114
  • Since beginning of last month:
    • Site-wide: 1,466

Common variants contribute to intrinsic human brain functional networks

genetics more details view paper
  • Downloaded 864 times
  • Download rankings, all-time:
    • Site-wide: 30,778
    • In genetics: 1,414
  • Year to date:
    • Site-wide: 14,744
  • Since beginning of last month:
    • Site-wide: 84,987

Nucleotide excision repair hotspots and coldspots of UV-induced DNA damage in the human genome

genomics more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 44,226
    • In genomics: 3,521
  • Year to date:
    • Site-wide: 33,746
  • Since beginning of last month:
    • Site-wide: 132,737

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

bioinformatics more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 47,105
    • In bioinformatics: 4,878
  • Year to date:
    • Site-wide: 149,610
  • Since beginning of last month:
    • Site-wide: 110,298

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 55,081
    • In bioinformatics: 5,526
  • Year to date:
    • Site-wide: 96,118
  • Since beginning of last month:
    • Site-wide: 73,668

iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement

bioinformatics more details view paper
  • Downloaded 392 times
  • Download rankings, all-time:
    • Site-wide: 80,164
    • In bioinformatics: 7,324
  • Year to date:
    • Site-wide: 22,290
  • Since beginning of last month:
    • Site-wide: 101,373

Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data

bioinformatics more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 80,860
    • In bioinformatics: 7,363
  • Year to date:
    • Site-wide: 13,490
  • Since beginning of last month:
    • Site-wide: 99,141

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 112,302
    • In bioinformatics: 9,351
  • Year to date:
    • Site-wide: 72,516
  • Since beginning of last month:
    • Site-wide: 126,988

MUNIn (Multiple sample UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple samples

genetics more details view paper
  • Downloaded 197 times
  • Download rankings, all-time:
    • Site-wide: 125,090
    • In genetics: 5,147
  • Year to date:
    • Site-wide: 79,818
  • Since beginning of last month:
    • Site-wide: None

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

genetics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 128,949
    • In genetics: 5,274
  • Year to date:
    • Site-wide: 37,328
  • Since beginning of last month:
    • Site-wide: 100,992

eSCAN: Scan Regulatory Regions for Aggregate Association Testing using Whole Genome Sequencing Data

genetics more details view paper
  • Downloaded 168 times
  • Download rankings, all-time:
    • Site-wide: 132,036
    • In genetics: 5,364
  • Year to date:
    • Site-wide: 67,293
  • Since beginning of last month:
    • Site-wide: None

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 136,352
    • In genomics: 7,193
  • Year to date:
    • Site-wide: 80,951
  • Since beginning of last month:
    • Site-wide: 101,555

Autophagy Induced by Palmitic Acid: a Brake in NAFLD Neutrophils

cell biology more details view paper
  • Downloaded 98 times
  • Download rankings, all-time:
    • Site-wide: 146,682
    • In cell biology: 6,704
  • Year to date:
    • Site-wide: 71,104
  • Since beginning of last month:
    • Site-wide: 91,411

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