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Author: Yuchen Yang

  • Most recently observed institution: University of North Carolina at Chapel Hill

Rankings

  • All-time downloads: 13,986 (rank: 13,706 (tie) )
  • Categories:
    • bioinformatics: 7,213 (rank: 1,407 )
    • biophysics: 1,937 (rank: 2,123 (tie) )
    • cell biology: 48 (rank: 39,979 (tie) )
    • genetics: 4,059 (rank: 4,384 (tie) )
    • genomics: 729 (rank: 28,277 (tie) )

Downloads per author, site-wide

Preprints

SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 2,878 times
  • Download rankings, all-time:
    • Site-wide: 4,554
    • In bioinformatics: 468
  • Year to date:
    • Site-wide: 30,357
  • Since beginning of last month:
    • Site-wide: 36,273

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 2,309 times
  • Download rankings, all-time:
    • Site-wide: 6,310
    • In genetics: 295
  • Year to date:
    • Site-wide: 9,698
  • Since beginning of last month:
    • Site-wide: 14,332

Cryo-EM structures of outer-arm dynein array bound to microtubule doublet reveal a mechanism for motor coordination

biophysics more details view paper
  • Downloaded 1,937 times
  • Download rankings, all-time:
    • Site-wide: 8,154
    • In biophysics: 164
  • Year to date:
    • Site-wide: 3,457
  • Since beginning of last month:
    • Site-wide: 12,882

SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection

bioinformatics more details view paper
  • Downloaded 1,256 times
  • Download rankings, all-time:
    • Site-wide: 15,597
    • In bioinformatics: 1,866
  • Year to date:
    • Site-wide: 36,142
  • Since beginning of last month:
    • Site-wide: 49,976

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 17,671
    • In bioinformatics: 2,112
  • Year to date:
    • Site-wide: 105,404
  • Since beginning of last month:
    • Site-wide: 79,703

Common variants contribute to intrinsic human brain functional networks

genetics more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 33,414
    • In genetics: 1,592
  • Year to date:
    • Site-wide: 12,044
  • Since beginning of last month:
    • Site-wide: 10,724

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble

bioinformatics more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 41,739
    • In bioinformatics: 4,483
  • Year to date:
    • Site-wide: 121,898
  • Since beginning of last month:
    • Site-wide: 88,254

Nucleotide excision repair hotspots and coldspots of UV-induced DNA damage in the human genome

genomics more details view paper
  • Downloaded 617 times
  • Download rankings, all-time:
    • Site-wide: 42,468
    • In genomics: 3,481
  • Year to date:
    • Site-wide: 22,017
  • Since beginning of last month:
    • Site-wide: 9,461

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 537 times
  • Download rankings, all-time:
    • Site-wide: 50,316
    • In bioinformatics: 5,201
  • Year to date:
    • Site-wide: 69,567
  • Since beginning of last month:
    • Site-wide: 89,397

RNA-silencing induces target gene relocalization toward a specialized nuage domain

genetics more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 51,531
    • In genetics: 2,382
  • Year to date:
    • Site-wide: 3,948
  • Since beginning of last month:
    • Site-wide: 3,365

iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement

bioinformatics more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 92,130
    • In bioinformatics: 8,100
  • Year to date:
    • Site-wide: 20,472
  • Since beginning of last month:
    • Site-wide: 52,261

Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data

bioinformatics more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 95,458
    • In bioinformatics: 8,325
  • Year to date:
    • Site-wide: 10,482
  • Since beginning of last month:
    • Site-wide: 36,715

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 107,970
    • In bioinformatics: 9,080
  • Year to date:
    • Site-wide: 57,420
  • Since beginning of last month:
    • Site-wide: 91,537

MUNIn (Multiple sample UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple samples

genetics more details view paper
  • Downloaded 179 times
  • Download rankings, all-time:
    • Site-wide: 115,299
    • In genetics: 4,964
  • Year to date:
    • Site-wide: 51,612
  • Since beginning of last month:
    • Site-wide: 19,847

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

genetics more details view paper
  • Downloaded 160 times
  • Download rankings, all-time:
    • Site-wide: 119,558
    • In genetics: 5,099
  • Year to date:
    • Site-wide: 20,821
  • Since beginning of last month:
    • Site-wide: 14,447

eSCAN: Scan Regulatory Regions for Aggregate Association Testing using Whole Genome Sequencing Data

genetics more details view paper
  • Downloaded 145 times
  • Download rankings, all-time:
    • Site-wide: 122,737
    • In genetics: 5,185
  • Year to date:
    • Site-wide: 43,175
  • Since beginning of last month:
    • Site-wide: 32,751

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 112 times
  • Download rankings, all-time:
    • Site-wide: 129,303
    • In genomics: 6,885
  • Year to date:
    • Site-wide: 69,210
  • Since beginning of last month:
    • Site-wide: 75,140

Autophagy Induced by Palmitic Acid: a Brake in NAFLD Neutrophils

cell biology more details view paper
  • Downloaded 48 times
  • Download rankings, all-time:
    • Site-wide: 137,919
    • In cell biology: 6,267
  • Year to date:
    • Site-wide: 67,648
  • Since beginning of last month:
    • Site-wide: 18,075

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