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Author: Guo-Cheng Yuan

Rankings

  • All-time downloads: 41,718 (rank: 4,853 )
  • Categories:
    • bioinformatics: 20,036 (rank: 358 )
    • cancer biology: 780 (rank: 15,012 (tie) )
    • developmental biology: 432 (rank: 14,391 (tie) )
    • genetics: 1,094 (rank: 16,558 (tie) )
    • genomics: 9,945 (rank: 2,243 )
    • molecular biology: 4,134 (rank: 1,104 (tie) )
    • neuroscience: 809 (rank: 37,084 (tie) )
    • systems biology: 4,488 (rank: 942 (tie) )

Downloads per author, site-wide

Preprints

Giotto, a toolbox for integrative analysis and visualization of spatial expression data

bioinformatics more details view paper
  • Downloaded 6,443 times
  • Download rankings, all-time:
    • Site-wide: 1,895
    • In bioinformatics: 117
  • Year to date:
    • Site-wide: 3,235
  • Since beginning of last month:
    • Site-wide: 12,617

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,999 times
  • Download rankings, all-time:
    • Site-wide: 3,650
    • In genomics: 361
  • Year to date:
    • Site-wide: 73,249
  • Since beginning of last month:
    • Site-wide: 132,020

CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis

genomics more details view paper
  • Downloaded 3,519 times
  • Download rankings, all-time:
    • Site-wide: 4,355
    • In genomics: 429
  • Year to date:
    • Site-wide: 20,000
  • Since beginning of last month:
    • Site-wide: 52,848

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 3,090 times
  • Download rankings, all-time:
    • Site-wide: 5,252
    • In molecular biology: 112
  • Year to date:
    • Site-wide: 52,961
  • Since beginning of last month:
    • Site-wide: 107,754

Decomposing spatially dependent and cell type specific contributions to cellular heterogeneity

bioinformatics more details view paper
  • Downloaded 2,774 times
  • Download rankings, all-time:
    • Site-wide: 6,156
    • In bioinformatics: 614
  • Year to date:
    • Site-wide: 140,300
  • Since beginning of last month:
    • Site-wide: 140,314

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,745 times
  • Download rankings, all-time:
    • Site-wide: 6,240
    • In bioinformatics: 626
  • Year to date:
    • Site-wide: 56,277
  • Since beginning of last month:
    • Site-wide: 111,919

Global architecture of the nucleus in single cells by DNA seqFISH+ and multiplexed immunofluorescence

systems biology more details view paper
  • Downloaded 2,469 times
  • Download rankings, all-time:
    • Site-wide: 7,313
    • In systems biology: 116
  • Year to date:
    • Site-wide: 5,490
  • Since beginning of last month:
    • Site-wide: 18,574

Dissecting super-enhancer hierarchy based on chromatin interactions

bioinformatics more details view paper
  • Downloaded 2,039 times
  • Download rankings, all-time:
    • Site-wide: 9,685
    • In bioinformatics: 1,082
  • Year to date:
    • Site-wide: 127,368
  • Since beginning of last month:
    • Site-wide: 139,211

Integrated spatial genomics in tissues reveals invariant and cell type dependent nuclear architecture

systems biology more details view paper
  • Downloaded 2,019 times
  • Download rankings, all-time:
    • Site-wide: 9,825
    • In systems biology: 161
  • Year to date:
    • Site-wide: 1,941
  • Since beginning of last month:
    • Site-wide: 3,140

Challenges And Emerging Directions In Single-Cell Analysis

genomics more details view paper
  • Downloaded 1,448 times
  • Download rankings, all-time:
    • Site-wide: 16,303
    • In genomics: 1,571
  • Year to date:
    • Site-wide: 146,877
  • Since beginning of last month:
    • Site-wide: 143,238

CUT&RUNTools 2.0: A pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis

bioinformatics more details view paper
  • Downloaded 1,269 times
  • Download rankings, all-time:
    • Site-wide: 19,883
    • In bioinformatics: 2,243
  • Year to date:
    • Site-wide: 3,759
  • Since beginning of last month:
    • Site-wide: 15,376

In vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation

genetics more details view paper
  • Downloaded 1,094 times
  • Download rankings, all-time:
    • Site-wide: 24,955
    • In genetics: 1,089
  • Year to date:
    • Site-wide: 32,479
  • Since beginning of last month:
    • Site-wide: 84,489

SpatialDWLS: accurate deconvolution of spatial transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,060 times
  • Download rankings, all-time:
    • Site-wide: 26,202
    • In bioinformatics: 2,916
  • Year to date:
    • Site-wide: 4,933
  • Since beginning of last month:
    • Site-wide: 19,984

Enhancer-dependence of gene expression increases with developmental age

molecular biology more details view paper
  • Downloaded 1,044 times
  • Download rankings, all-time:
    • Site-wide: 26,808
    • In molecular biology: 715
  • Year to date:
    • Site-wide: 110,460
  • Since beginning of last month:
    • Site-wide: 83,424

A cluster-aware, weighted ensemble clustering method for cell-type detection

bioinformatics more details view paper
  • Downloaded 999 times
  • Download rankings, all-time:
    • Site-wide: 28,571
    • In bioinformatics: 3,176
  • Year to date:
    • Site-wide: 153,961
  • Since beginning of last month:
    • Site-wide: 153,275

Revealing the critical regulators of cell identity in the mouse cell atlas

bioinformatics more details view paper
  • Downloaded 863 times
  • Download rankings, all-time:
    • Site-wide: 35,374
    • In bioinformatics: 3,824
  • Year to date:
    • Site-wide: 149,512
  • Since beginning of last month:
    • Site-wide: 148,975

The landscape of human brain immune response in patients with severe COVID-19

neuroscience more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 38,868
    • In neuroscience: 5,207
  • Year to date:
    • Site-wide: 7,516
  • Since beginning of last month:
    • Site-wide: 51,465

CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation

cancer biology more details view paper
  • Downloaded 780 times
  • Download rankings, all-time:
    • Site-wide: 40,946
    • In cancer biology: 1,115
  • Year to date:
    • Site-wide: 150,632
  • Since beginning of last month:
    • Site-wide: 154,593

Histone demethylome map reveals combinatorial gene regulatory functions in embryonic stem cells

genomics more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 47,710
    • In genomics: 3,662
  • Year to date:
    • Site-wide: 22,287
  • Since beginning of last month:
    • Site-wide: 14,539

Robust Lineage Reconstruction from High-Dimensional Single-Cell Data

bioinformatics more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 52,171
    • In bioinformatics: 5,226
  • Year to date:
    • Site-wide: 163,437
  • Since beginning of last month:
    • Site-wide: 156,825

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 55,364
    • In bioinformatics: 5,502
  • Year to date:
    • Site-wide: 143,256
  • Since beginning of last month:
    • Site-wide: 139,312

GiniClust3: a fast and memory-efficient tool for rare cell type identification

bioinformatics more details view paper
  • Downloaded 560 times
  • Download rankings, all-time:
    • Site-wide: 63,965
    • In bioinformatics: 6,162
  • Year to date:
    • Site-wide: 131,752
  • Since beginning of last month:
    • Site-wide: 51,162

Sarcomeres regulate cardiomyocyte maturation through MRTF-SRF signaling

developmental biology more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 85,650
    • In developmental biology: 2,240
  • Year to date:
    • Site-wide: 77,444
  • Since beginning of last month:
    • Site-wide: 99,987

Multi-scale annotations of chromatin states in 127 human cell-types

genomics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 122,126
    • In genomics: 6,780
  • Year to date:
    • Site-wide: 83,831
  • Since beginning of last month:
    • Site-wide: 85,616

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