Rxivist logo

Author: Simon R Harris

Rankings

  • All-time downloads: 29,072 (rank: 7,296 )
  • Categories:
    • bioinformatics: 8,029 (rank: 1,488 )
    • genetics: 1,404 (rank: 13,906 (tie) )
    • genomics: 16,498 (rank: 1,038 (tie) )
    • microbiology: 3,141 (rank: 5,935 (tie) )

Downloads per author, site-wide

Preprints

Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

genomics more details view paper
  • Downloaded 6,343 times
  • Download rankings, all-time:
    • Site-wide: 1,937
    • In genomics: 152
  • Year to date:
    • Site-wide: 83,433
  • Since beginning of last month:
    • Site-wide: 69,286

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

bioinformatics more details view paper
  • Downloaded 2,750 times
  • Download rankings, all-time:
    • Site-wide: 6,241
    • In bioinformatics: 624
  • Year to date:
    • Site-wide: 115,112
  • Since beginning of last month:
    • Site-wide: 104,555

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

genomics more details view paper
  • Downloaded 2,210 times
  • Download rankings, all-time:
    • Site-wide: 8,648
    • In genomics: 860
  • Year to date:
    • Site-wide: 115,256
  • Since beginning of last month:
    • Site-wide: 104,205

Circlator: automated circularization of genome assemblies using long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,900 times
  • Download rankings, all-time:
    • Site-wide: 10,826
    • In bioinformatics: 1,220
  • Year to date:
    • Site-wide: 73,288
  • Since beginning of last month:
    • Site-wide: 132,935

SKA: Split Kmer Analysis Toolkit for Bacterial Genomic Epidemiology

genomics more details view paper
  • Downloaded 1,862 times
  • Download rankings, all-time:
    • Site-wide: 11,149
    • In genomics: 1,103
  • Year to date:
    • Site-wide: 22,741
  • Since beginning of last month:
    • Site-wide: 35,101

Fast and flexible bacterial genomic epidemiology with PopPUNK

genomics more details view paper
  • Downloaded 1,662 times
  • Download rankings, all-time:
    • Site-wide: 13,187
    • In genomics: 1,312
  • Year to date:
    • Site-wide: 85,244
  • Since beginning of last month:
    • Site-wide: 134,851

Oxford Nanopore MinION genome sequencer: performance characteristics, optimised analysis workflow, phylogenetic analysis and prediction of antimicrobial resistance in Neisseria gonorrhoeae

genomics more details view paper
  • Downloaded 1,607 times
  • Download rankings, all-time:
    • Site-wide: 13,849
    • In genomics: 1,361
  • Year to date:
    • Site-wide: 67,779
  • Since beginning of last month:
    • Site-wide: 73,203

Robust high throughput prokaryote de novo assembly and improvement pipeline for Illumina data

bioinformatics more details view paper
  • Downloaded 1,301 times
  • Download rankings, all-time:
    • Site-wide: 19,219
    • In bioinformatics: 2,168
  • Year to date:
    • Site-wide: 146,137
  • Since beginning of last month:
    • Site-wide: 164,612

Genome-wide epistasis and co-selection study using mutual information

genomics more details view paper
  • Downloaded 1,103 times
  • Download rankings, all-time:
    • Site-wide: 24,721
    • In genomics: 2,256
  • Year to date:
    • Site-wide: 136,176
  • Since beginning of last month:
    • Site-wide: 148,492

Phandango: an interactive viewer for bacterial population genomics.

bioinformatics more details view paper
  • Downloaded 1,102 times
  • Download rankings, all-time:
    • Site-wide: 24,757
    • In bioinformatics: 2,780
  • Year to date:
    • Site-wide: 105,729
  • Since beginning of last month:
    • Site-wide: 143,142

Increased antibiotic susceptibility in Neisseria gonorrhoeae through adaptation to the cervical environment

microbiology more details view paper
  • Downloaded 1,030 times
  • Download rankings, all-time:
    • Site-wide: 27,441
    • In microbiology: 1,595
  • Year to date:
    • Site-wide: 59,599
  • Since beginning of last month:
    • Site-wide: 100,885

Bayesian inference of ancestral dates on bacterial phylogenetic trees

bioinformatics more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 29,686
    • In bioinformatics: 3,294
  • Year to date:
    • Site-wide: 151,012
  • Since beginning of last month:
    • Site-wide: 162,698

Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

microbiology more details view paper
  • Downloaded 786 times
  • Download rankings, all-time:
    • Site-wide: 40,653
    • In microbiology: 2,439
  • Year to date:
    • Site-wide: 145,901
  • Since beginning of last month:
    • Site-wide: 158,523

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

genetics more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 43,287
    • In genetics: 1,871
  • Year to date:
    • Site-wide: 160,347
  • Since beginning of last month:
    • Site-wide: 149,316

Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history

genomics more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 45,783
    • In genomics: 3,538
  • Year to date:
    • Site-wide: 51,834
  • Since beginning of last month:
    • Site-wide: 142,240

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv

genetics more details view paper
  • Downloaded 651 times
  • Download rankings, all-time:
    • Site-wide: 52,949
    • In genetics: 2,255
  • Year to date:
    • Site-wide: 41,734
  • Since beginning of last month:
    • Site-wide: 68,308

A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

genomics more details view paper
  • Downloaded 643 times
  • Download rankings, all-time:
    • Site-wide: 53,814
    • In genomics: 4,019
  • Year to date:
    • Site-wide: 37,574
  • Since beginning of last month:
    • Site-wide: 68,453

Genomic dissection of an Icelandic epidemic of equine respiratory disease

microbiology more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 88,042
    • In microbiology: 5,911
  • Year to date:
    • Site-wide: 150,982
  • Since beginning of last month:
    • Site-wide: 125,367

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

microbiology more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 100,720
    • In microbiology: 6,957
  • Year to date:
    • Site-wide: 159,824
  • Since beginning of last month:
    • Site-wide: 164,719

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests different ecological niches

genomics more details view paper
  • Downloaded 344 times
  • Download rankings, all-time:
    • Site-wide: 105,730
    • In genomics: 6,258
  • Year to date:
    • Site-wide: 159,326
  • Since beginning of last month:
    • Site-wide: 154,168

Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae

microbiology more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 107,997
    • In microbiology: 7,566
  • Year to date:
    • Site-wide: 161,652
  • Since beginning of last month:
    • Site-wide: 160,523

Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana

microbiology more details view paper
  • Downloaded 203 times
  • Download rankings, all-time:
    • Site-wide: 142,132
    • In microbiology: 10,567
  • Year to date:
    • Site-wide: 164,292
  • Since beginning of last month:
    • Site-wide: 165,242

PanLingua

News