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Author: Elizabeth Purdom

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  • All-time downloads: 38,530 (rank: 909 out of 365,768)
  • Categories:
    • bioinformatics: 5,406 (rank: 1,504 out of 31,509)
    • genomics: 4,331 (rank: 4,129 out of 39,335)
    • neuroscience: 28,793 (rank: 78 (tie) out of 61,261)

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Preprints

mbkmeans: fast clustering for single cell data using mini-batch k-means

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Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

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    • Site-wide: 45 out of 85,018
    • In neuroscience: 6 out of 15,136
  • Year to date:
    • Site-wide: 24 out of 85,018
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    • Site-wide: 33 out of 85,018

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
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    • Site-wide: 1,262 out of 85,018
    • In genomics: 279 out of 5,477
  • Year to date:
    • Site-wide: 5,129 out of 85,018
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    • Site-wide: 5,992 out of 85,018

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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    • In neuroscience: 338 out of 15,136
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    • Site-wide: 341 out of 85,018
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Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
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    • In bioinformatics: 533 out of 8,141
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    • Site-wide: 31,491 out of 85,018
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    • Site-wide: 12,138 out of 85,018

Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping

bioinformatics more details view paper
  • Downloaded 899 times
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    • Site-wide: 12,788 out of 85,018
    • In bioinformatics: 2,057 out of 8,141
  • Year to date:
    • Site-wide: 77,122 out of 85,018
  • Since beginning of last month:
    • Site-wide: 79,568 out of 85,018

Clustering of mRNA-Seq data for detection of alternative splicing patterns

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    • In bioinformatics: 2,205 out of 8,141
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    • Site-wide: 67,722 out of 85,018
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    • Site-wide: 54,097 out of 85,018

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

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  • Year to date:
    • Site-wide: 67,337 out of 85,018
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    • Site-wide: 71,949 out of 85,018

MethCP: Differentially Methylated Region Detection with Change Point Models

genomics more details view paper
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    • Site-wide: 17,170 out of 85,018
    • In genomics: 2,135 out of 5,477
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    • Site-wide: 29,494 out of 85,018
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    • Site-wide: 16,081 out of 85,018

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
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    • Site-wide: 22,517 out of 85,018
    • In bioinformatics: 3,211 out of 8,141
  • Year to date:
    • Site-wide: 2,135 out of 85,018
  • Since beginning of last month:
    • Site-wide: 4,683 out of 85,018

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