Author: Jonathan M.D. Wood

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Preprints

Telomere-to-telomere assembly of a complete human X chromosome

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  • Site-wide: 2,024
  • In bioinformatics: 111
• Year to date:
  • Site-wide: 15,200
• Since beginning of last month:
  • Site-wide: 32,210

Towards complete and error-free genome assemblies of all vertebrate species

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  • Site-wide: 2,371
  • In genomics: 178
• Year to date:
  • Site-wide: 22,410
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  • Site-wide: 20,521

Identifying and removing haplotypic duplication in primary genome assemblies

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  • Site-wide: 6,017
  • In bioinformatics: 572
• Year to date:
  • Site-wide: 13,136
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  • Site-wide: 15,186

Automated assembly of high-quality diploid human reference genomes

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  • Site-wide: 9,384
  • In genomics: None
• Year to date:
  • Site-wide: 529
• Since beginning of last month:
  • Site-wide: 1,080

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

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  • Site-wide: 13,774
  • In genomics: 1,296
• Year to date:
  • Site-wide: 48,806
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  • Site-wide: 34,823

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

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  • Site-wide: 15,227
  • In genomics: 1,373
• Year to date:
  • Site-wide: 78,262
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  • Site-wide: 76,513

Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

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  • Site-wide: 28,406
  • In genomics: 2,326
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Differential sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

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  • Site-wide: 50,586
  • In genomics: 5,073
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  • Site-wide: 6,820

Widespread false gene gains caused by duplication errors in genome assemblies

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  • Site-wide: 51,804
  • In genomics: 3,866
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  • Site-wide: 49,988

Significantly improving the quality of genome assemblies through curation

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  • In bioinformatics: 5,701
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  • Site-wide: 110,647
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  • Site-wide: 99,348

Caecilian genomes reveal molecular basis of adaptation and convergent evolution of limblessness in snakes and caecilians.

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  • Site-wide: 77,539
  • In evolutionary biology: None
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  • Site-wide: 4,319
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  • Site-wide: 16,036

False gene and chromosome losses affected by assembly and sequence errors

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  • Site-wide: 81,577
  • In genomics: 5,491
• Year to date:
  • Site-wide: 41,471
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  • Site-wide: 50,558

A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)

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  • Site-wide: 115,635
  • In genomics: 6,489
• Year to date:
  • Site-wide: 91,315
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  • Site-wide: 80,176

Genomics of cold adaptations in the Antarctic notothenioid fish radiation.

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  • Site-wide: 130,701
  • In genomics: None
• Year to date:
  • Site-wide: 9,718
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  • Site-wide: 1,329

Genome sequence assembly evaluation using long-range sequencing data

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  • Site-wide: 141,105
  • In bioinformatics: None
• Year to date:
  • Site-wide: 11,465
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  • Site-wide: 1,588

The evolution of two transmissible cancers in Tasmanian devils

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  • Site-wide: 169,905
  • In cancer biology: None
• Year to date:
  • Site-wide: 21,894
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  • Site-wide: 3,233