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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,230 bioRxiv papers from 306,630 authors.

Author: Paul C. Boutros

Rankings

  • All-time downloads: 44,794 (rank: 342 out of 306,635)
  • Categories:
    • bioinformatics: 10,436 (rank: 319 out of 26,738)
    • cancer biology: 21,283 (rank: 21 out of 19,860)
    • genomics: 13,075 (rank: 740 (tie) out of 34,692)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 8,312 times
  • Download rankings, all-time:
    • Site-wide: 186 out of 70,230
    • In cancer biology: 6 out of 2,389
  • Year to date:
    • Site-wide: 447 out of 70,230
  • Since beginning of last month:
    • Site-wide: 589 out of 70,230

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 4,778 times
  • Download rankings, all-time:
    • Site-wide: 501 out of 70,230
    • In genomics: 130 out of 4,700
  • Year to date:
    • Site-wide: 351 out of 70,230
  • Since beginning of last month:
    • Site-wide: 1,552 out of 70,230

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

cancer biology more details view paper
  • Downloaded 3,999 times
  • Download rankings, all-time:
    • Site-wide: 718 out of 70,230
    • In cancer biology: 21 out of 2,389
  • Year to date:
    • Site-wide: 28,362 out of 70,230
  • Since beginning of last month:
    • Site-wide: 6,161 out of 70,230

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 3,179 times
  • Download rankings, all-time:
    • Site-wide: 1,122 out of 70,230
    • In genomics: 264 out of 4,700
  • Year to date:
    • Site-wide: 480 out of 70,230
  • Since beginning of last month:
    • Site-wide: 828 out of 70,230

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,467 times
  • Download rankings, all-time:
    • Site-wide: 1,766 out of 70,230
    • In bioinformatics: 351 out of 6,887
  • Year to date:
    • Site-wide: 47,003 out of 70,230
  • Since beginning of last month:
    • Site-wide: 56,094 out of 70,230

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,311 times
  • Download rankings, all-time:
    • Site-wide: 1,985 out of 70,230
    • In genomics: 428 out of 4,700
  • Year to date:
    • Site-wide: 53,606 out of 70,230
  • Since beginning of last month:
    • Site-wide: 39,034 out of 70,230

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,082 times
  • Download rankings, all-time:
    • Site-wide: 2,384 out of 70,230
    • In cancer biology: 57 out of 2,389
  • Year to date:
    • Site-wide: 40,509 out of 70,230
  • Since beginning of last month:
    • Site-wide: 28,316 out of 70,230

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,017 times
  • Download rankings, all-time:
    • Site-wide: 2,514 out of 70,230
    • In genomics: 521 out of 4,700
  • Year to date:
    • Site-wide: 26,059 out of 70,230
  • Since beginning of last month:
    • Site-wide: 40,580 out of 70,230

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 1,815 times
  • Download rankings, all-time:
    • Site-wide: 3,003 out of 70,230
    • In cancer biology: 71 out of 2,389
  • Year to date:
    • Site-wide: 49,022 out of 70,230
  • Since beginning of last month:
    • Site-wide: 13,904 out of 70,230

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,682 times
  • Download rankings, all-time:
    • Site-wide: 3,424 out of 70,230
    • In bioinformatics: 683 out of 6,887
  • Year to date:
    • Site-wide: 3,303 out of 70,230
  • Since beginning of last month:
    • Site-wide: 13,242 out of 70,230

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,427 times
  • Download rankings, all-time:
    • Site-wide: 4,544 out of 70,230
    • In cancer biology: 115 out of 2,389
  • Year to date:
    • Site-wide: 12,232 out of 70,230
  • Since beginning of last month:
    • Site-wide: 4,959 out of 70,230

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,286 times
  • Download rankings, all-time:
    • Site-wide: 5,373 out of 70,230
    • In cancer biology: 140 out of 2,389
  • Year to date:
    • Site-wide: 64,316 out of 70,230
  • Since beginning of last month:
    • Site-wide: 31,775 out of 70,230

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,247 times
  • Download rankings, all-time:
    • Site-wide: 5,666 out of 70,230
    • In bioinformatics: 1,081 out of 6,887
  • Year to date:
    • Site-wide: 23,495 out of 70,230
  • Since beginning of last month:
    • Site-wide: 61,308 out of 70,230

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 8,128 out of 70,230
    • In bioinformatics: 1,439 out of 6,887
  • Year to date:
    • Site-wide: 47,116 out of 70,230
  • Since beginning of last month:
    • Site-wide: 13,226 out of 70,230

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 863 times
  • Download rankings, all-time:
    • Site-wide: 10,359 out of 70,230
    • In cancer biology: 303 out of 2,389
  • Year to date:
    • Site-wide: 19,559 out of 70,230
  • Since beginning of last month:
    • Site-wide: 27,168 out of 70,230

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 764 times
  • Download rankings, all-time:
    • Site-wide: 12,463 out of 70,230
    • In bioinformatics: 2,049 out of 6,887
  • Year to date:
    • Site-wide: None out of 70,230
  • Since beginning of last month:
    • Site-wide: 15,432 out of 70,230

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 13,019 out of 70,230
    • In bioinformatics: 2,117 out of 6,887
  • Year to date:
    • Site-wide: 29,126 out of 70,230
  • Since beginning of last month:
    • Site-wide: 58,958 out of 70,230

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 725 times
  • Download rankings, all-time:
    • Site-wide: 13,442 out of 70,230
    • In cancer biology: 398 out of 2,389
  • Year to date:
    • Site-wide: 13,295 out of 70,230
  • Since beginning of last month:
    • Site-wide: 18,401 out of 70,230

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 14,593 out of 70,230
    • In bioinformatics: 2,331 out of 6,887
  • Year to date:
    • Site-wide: 8,529 out of 70,230
  • Since beginning of last month:
    • Site-wide: 10,804 out of 70,230

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 503 times
  • Download rankings, all-time:
    • Site-wide: 22,218 out of 70,230
    • In bioinformatics: 3,171 out of 6,887
  • Year to date:
    • Site-wide: 55,611 out of 70,230
  • Since beginning of last month:
    • Site-wide: 34,947 out of 70,230

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 26,169 out of 70,230
    • In cancer biology: 813 out of 2,389
  • Year to date:
    • Site-wide: 48,920 out of 70,230
  • Since beginning of last month:
    • Site-wide: 65,181 out of 70,230

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 437 times
  • Download rankings, all-time:
    • Site-wide: 26,274 out of 70,230
    • In genomics: 2,774 out of 4,700
  • Year to date:
    • Site-wide: 37,253 out of 70,230
  • Since beginning of last month:
    • Site-wide: 65,899 out of 70,230

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 27,034 out of 70,230
    • In bioinformatics: 3,638 out of 6,887
  • Year to date:
    • Site-wide: 25,548 out of 70,230
  • Since beginning of last month:
    • Site-wide: 16,193 out of 70,230

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 34,902 out of 70,230
    • In cancer biology: 1,092 out of 2,389
  • Year to date:
    • Site-wide: 34,744 out of 70,230
  • Since beginning of last month:
    • Site-wide: 25,311 out of 70,230

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 325 times
  • Download rankings, all-time:
    • Site-wide: 35,810 out of 70,230
    • In bioinformatics: 4,442 out of 6,887
  • Year to date:
    • Site-wide: 51,301 out of 70,230
  • Since beginning of last month:
    • Site-wide: 22,594 out of 70,230

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 49,609 out of 70,230
    • In bioinformatics: 5,536 out of 6,887
  • Year to date:
    • Site-wide: 51,531 out of 70,230
  • Since beginning of last month:
    • Site-wide: 68,441 out of 70,230

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 50,050 out of 70,230
    • In bioinformatics: 5,558 out of 6,887
  • Year to date:
    • Site-wide: 30,785 out of 70,230
  • Since beginning of last month:
    • Site-wide: 23,037 out of 70,230

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 50,381 out of 70,230
    • In genomics: 4,035 out of 4,700
  • Year to date:
    • Site-wide: 29,561 out of 70,230
  • Since beginning of last month:
    • Site-wide: 63,590 out of 70,230

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 174 times
  • Download rankings, all-time:
    • Site-wide: 55,004 out of 70,230
    • In bioinformatics: 5,932 out of 6,887
  • Year to date:
    • Site-wide: 22,153 out of 70,230
  • Since beginning of last month:
    • Site-wide: 66,094 out of 70,230

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 59,069 out of 70,230
    • In genomics: 4,371 out of 4,700
  • Year to date:
    • Site-wide: 48,584 out of 70,230
  • Since beginning of last month:
    • Site-wide: 30,927 out of 70,230

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