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Author: Paul C. Boutros

Rankings

  • All-time downloads: 52,975 (rank: 739 out of 404,161)
  • Categories:
    • bioinformatics: 11,844 (rank: 443 out of 34,272)
    • cancer biology: 25,015 (rank: 22 out of 28,183)
    • genomics: 16,116 (rank: 605 out of 42,763)

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Preprints

The evolutionary history of 2,658 cancers

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Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

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    • In genomics: 129 out of 5,955
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Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

cancer biology more details view paper
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    • In cancer biology: 23 out of 3,367
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A robust benchmark for germline structural variant detection

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    • In genomics: 162 out of 5,955
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Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
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    • In bioinformatics: 466 out of 8,837
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A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

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    • In genomics: 556 out of 5,955
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Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

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    • In cancer biology: 69 out of 3,367
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A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

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    • In genomics: 646 out of 5,955
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Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
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    • In cancer biology: 83 out of 3,367
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    • Site-wide: 22,177 out of 94,912

Creating Standards for Evaluating Tumour Subclonal Reconstruction

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    • In bioinformatics: 795 out of 8,837
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The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
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    • In cancer biology: 128 out of 3,367
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    • Site-wide: 19,276 out of 94,912
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    • Site-wide: 19,711 out of 94,912

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
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    • In cancer biology: 193 out of 3,367
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    • Site-wide: 54,318 out of 94,912
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    • Site-wide: 69,302 out of 94,912

Kronos: a workflow assembler for genome analytics and informatics

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    • In bioinformatics: 1,337 out of 8,837
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    • Site-wide: 57,482 out of 94,912

Integrative pathway enrichment analysis of multivariate omics data

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    • Site-wide: 8,994 out of 94,912
    • In bioinformatics: 1,492 out of 8,837
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    • Site-wide: 20,296 out of 94,912
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    • Site-wide: 30,736 out of 94,912

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
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    • Site-wide: 9,436 out of 94,912
    • In cancer biology: 251 out of 3,367
  • Year to date:
    • Site-wide: 10,872 out of 94,912
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    • Site-wide: 8,807 out of 94,912

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 916 times
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    • In cancer biology: 404 out of 3,367
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    • Site-wide: 21,488 out of 94,912
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    • Site-wide: 12,654 out of 94,912

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
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    • In bioinformatics: 2,368 out of 8,837
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    • Site-wide: 31,061 out of 94,912

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

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    • In bioinformatics: 2,395 out of 8,837
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    • Site-wide: 35,002 out of 94,912

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

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    • In bioinformatics: 2,632 out of 8,837
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    • Site-wide: 76,028 out of 94,912
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    • Site-wide: 63,479 out of 94,912

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
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    • In bioinformatics: 3,614 out of 8,837
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    • Site-wide: 52,290 out of 94,912
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    • Site-wide: 40,351 out of 94,912

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
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    • Site-wide: 30,612 out of 94,912
    • In cancer biology: 970 out of 3,367
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    • Site-wide: 49,850 out of 94,912
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    • Site-wide: 65,065 out of 94,912

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
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    • In cancer biology: 1,074 out of 3,367
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    • Site-wide: 65,121 out of 94,912

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
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    • In bioinformatics: 4,325 out of 8,837
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    • Site-wide: 78,150 out of 94,912

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 485 times
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    • In genomics: 3,366 out of 5,955
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    • Site-wide: 71,677 out of 94,912

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
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    • In bioinformatics: 4,910 out of 8,837
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    • Site-wide: 37,195 out of 94,912

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
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    • In bioinformatics: 6,480 out of 8,837
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    • Site-wide: 46,044 out of 94,912

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
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    • In bioinformatics: 6,742 out of 8,837
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    • Site-wide: 66,206 out of 94,912

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
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    • Site-wide: 64,219 out of 94,912
    • In genomics: 4,842 out of 5,955
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    • Site-wide: 84,426 out of 94,912
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    • Site-wide: 82,518 out of 94,912

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
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    • In bioinformatics: 7,154 out of 8,837
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  • Since beginning of last month:
    • Site-wide: 76,229 out of 94,912

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
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    • Site-wide: 71,323 out of 94,912
    • In genomics: 5,125 out of 5,955
  • Year to date:
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    • Site-wide: 58,464 out of 94,912

Age Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
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    • In cancer biology: 2,835 out of 3,367
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    • Site-wide: 3,732 out of 94,912

DreamAI: algorithm for the imputation of proteomics data

bioinformatics more details view paper
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    • In bioinformatics: 8,165 out of 8,837
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    • Site-wide: 4,325 out of 94,912

Ancestry Influences on the Molecular Presentation of Tumours

cancer biology more details view paper
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    • In cancer biology: 3,171 out of 3,367
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    • Site-wide: 9,132 out of 94,912

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