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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,016 bioRxiv papers from 288,163 authors.

Author: Paul C. Boutros

Rankings

  • All-time downloads: 42,400 (rank: 351 out of 288,163)
  • Categories:
    • bioinformatics: 10,055 (rank: 301 out of 25,096)
    • cancer biology: 20,189 (rank: 22 out of 17,946)
    • genomics: 12,156 (rank: 758 out of 32,814)

Downloads per author, site-wide

Preprints

The evolutionary history of 2,658 cancers

cancer biology more details view paper
  • Downloaded 7,801 times
  • Download rankings, all-time:
    • Site-wide: 183 out of 65,016
    • In cancer biology: 6 out of 2,166
  • Year to date:
    • Site-wide: 404 out of 65,016
  • Since beginning of last month:
    • Site-wide: 264 out of 65,016

Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

genomics more details view paper
  • Downloaded 4,429 times
  • Download rankings, all-time:
    • Site-wide: 537 out of 65,016
    • In genomics: 142 out of 4,446
  • Year to date:
    • Site-wide: 491 out of 65,016
  • Since beginning of last month:
    • Site-wide: 1,224 out of 65,016

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

cancer biology more details view paper
  • Downloaded 3,888 times
  • Download rankings, all-time:
    • Site-wide: 694 out of 65,016
    • In cancer biology: 21 out of 2,166
  • Year to date:
    • Site-wide: 1,098 out of 65,016
  • Since beginning of last month:
    • Site-wide: 1,996 out of 65,016

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 2,697 times
  • Download rankings, all-time:
    • Site-wide: 1,368 out of 65,016
    • In genomics: 313 out of 4,446
  • Year to date:
    • Site-wide: 255 out of 65,016
  • Since beginning of last month:
    • Site-wide: 308 out of 65,016

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,452 times
  • Download rankings, all-time:
    • Site-wide: 1,623 out of 65,016
    • In bioinformatics: 327 out of 6,438
  • Year to date:
    • Site-wide: 48,273 out of 65,016
  • Since beginning of last month:
    • Site-wide: 63,003 out of 65,016

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,296 times
  • Download rankings, all-time:
    • Site-wide: 1,832 out of 65,016
    • In genomics: 403 out of 4,446
  • Year to date:
    • Site-wide: 46,234 out of 65,016
  • Since beginning of last month:
    • Site-wide: 15,577 out of 65,016

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,022 times
  • Download rankings, all-time:
    • Site-wide: 2,303 out of 65,016
    • In cancer biology: 53 out of 2,166
  • Year to date:
    • Site-wide: 7,224 out of 65,016
  • Since beginning of last month:
    • Site-wide: 11,973 out of 65,016

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 1,996 times
  • Download rankings, all-time:
    • Site-wide: 2,357 out of 65,016
    • In genomics: 494 out of 4,446
  • Year to date:
    • Site-wide: 44,807 out of 65,016
  • Since beginning of last month:
    • Site-wide: 23,468 out of 65,016

Sex Differences in Oncogenic Mutational Processes

cancer biology more details view paper
  • Downloaded 1,776 times
  • Download rankings, all-time:
    • Site-wide: 2,863 out of 65,016
    • In cancer biology: 68 out of 2,166
  • Year to date:
    • Site-wide: 592 out of 65,016
  • Since beginning of last month:
    • Site-wide: 4,821 out of 65,016

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,588 times
  • Download rankings, all-time:
    • Site-wide: 3,449 out of 65,016
    • In bioinformatics: 687 out of 6,438
  • Year to date:
    • Site-wide: 5,156 out of 65,016
  • Since beginning of last month:
    • Site-wide: 6,525 out of 65,016

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 5,044 out of 65,016
    • In cancer biology: 132 out of 2,166
  • Year to date:
    • Site-wide: 13,581 out of 65,016
  • Since beginning of last month:
    • Site-wide: 17,164 out of 65,016

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,232 times
  • Download rankings, all-time:
    • Site-wide: 5,256 out of 65,016
    • In bioinformatics: 1,013 out of 6,438
  • Year to date:
    • Site-wide: 44,367 out of 65,016
  • Since beginning of last month:
    • Site-wide: 48,951 out of 65,016

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

cancer biology more details view paper
  • Downloaded 1,219 times
  • Download rankings, all-time:
    • Site-wide: 5,356 out of 65,016
    • In cancer biology: 145 out of 2,166
  • Year to date:
    • Site-wide: 1,220 out of 65,016
  • Since beginning of last month:
    • Site-wide: 596 out of 65,016

Integrative pathway enrichment analysis of multivariate omics data

bioinformatics more details view paper
  • Downloaded 962 times
  • Download rankings, all-time:
    • Site-wide: 7,898 out of 65,016
    • In bioinformatics: 1,395 out of 6,438
  • Year to date:
    • Site-wide: 13,503 out of 65,016
  • Since beginning of last month:
    • Site-wide: 38,543 out of 65,016

The Origins and Consequences of Localized and Global Somatic Hypermutation

cancer biology more details view paper
  • Downloaded 815 times
  • Download rankings, all-time:
    • Site-wide: 10,249 out of 65,016
    • In cancer biology: 288 out of 2,166
  • Year to date:
    • Site-wide: 11,398 out of 65,016
  • Since beginning of last month:
    • Site-wide: 11,094 out of 65,016

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 736 times
  • Download rankings, all-time:
    • Site-wide: 11,932 out of 65,016
    • In bioinformatics: 1,979 out of 6,438
  • Year to date:
    • Site-wide: 29,174 out of 65,016
  • Since beginning of last month:
    • Site-wide: 31,628 out of 65,016

BPG: Seamless, Automated and Interactive Visualization of Scientific Data

bioinformatics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 12,067 out of 65,016
    • In bioinformatics: 1,994 out of 6,438
  • Year to date:
    • Site-wide: 43,992 out of 65,016
  • Since beginning of last month:
    • Site-wide: 53,209 out of 65,016

Quantifying the Influence of Mutation Detection on Tumour Subclonal Reconstruction

cancer biology more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 13,537 out of 65,016
    • In cancer biology: 396 out of 2,166
  • Year to date:
    • Site-wide: 8,798 out of 65,016
  • Since beginning of last month:
    • Site-wide: 15,413 out of 65,016

Fast Nonnegative Matrix Factorization and Applications to Pattern Extraction, Deconvolution and Imputation

bioinformatics more details view paper
  • Downloaded 634 times
  • Download rankings, all-time:
    • Site-wide: 14,734 out of 65,016
    • In bioinformatics: 2,329 out of 6,438
  • Year to date:
    • Site-wide: 12,805 out of 65,016
  • Since beginning of last month:
    • Site-wide: 17,454 out of 65,016

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures

bioinformatics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 21,120 out of 65,016
    • In bioinformatics: 3,068 out of 6,438
  • Year to date:
    • Site-wide: 26,330 out of 65,016
  • Since beginning of last month:
    • Site-wide: 45,112 out of 65,016

Modeling the MYC-driven normal-to-tumour switch in breast cancer.

cancer biology more details view paper
  • Downloaded 428 times
  • Download rankings, all-time:
    • Site-wide: 24,294 out of 65,016
    • In cancer biology: 744 out of 2,166
  • Year to date:
    • Site-wide: 17,319 out of 65,016
  • Since beginning of last month:
    • Site-wide: 36,257 out of 65,016

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 24,383 out of 65,016
    • In genomics: 2,623 out of 4,446
  • Year to date:
    • Site-wide: 54,974 out of 65,016
  • Since beginning of last month:
    • Site-wide: 47,173 out of 65,016

Network-Based Biomarkers Enable Cross-Disease Biomarker Discovery

bioinformatics more details view paper
  • Downloaded 390 times
  • Download rankings, all-time:
    • Site-wide: 26,832 out of 65,016
    • In bioinformatics: 3,637 out of 6,438
  • Year to date:
    • Site-wide: 36,076 out of 65,016
  • Since beginning of last month:
    • Site-wide: 55,461 out of 65,016

Divergent mutational processes distinguish hypoxic and normoxic tumours

cancer biology more details view paper
  • Downloaded 304 times
  • Download rankings, all-time:
    • Site-wide: 34,217 out of 65,016
    • In cancer biology: 1,064 out of 2,166
  • Year to date:
    • Site-wide: 12,851 out of 65,016
  • Since beginning of last month:
    • Site-wide: 22,839 out of 65,016

Accurate Reference-Free Somatic Variant-Calling by Integrating Genomic, Sequencing and Population Data

bioinformatics more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 34,662 out of 65,016
    • In bioinformatics: 4,328 out of 6,438
  • Year to date:
    • Site-wide: 27,206 out of 65,016
  • Since beginning of last month:
    • Site-wide: 29,490 out of 65,016

Subnetwork-based prognostic biomarkers exhibit performance and robustness superior to gene-based biomarkers in breast cancer

bioinformatics more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 45,406 out of 65,016
    • In bioinformatics: 5,147 out of 6,438
  • Year to date:
    • Site-wide: 43,488 out of 65,016
  • Since beginning of last month:
    • Site-wide: 17,947 out of 65,016

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 47,137 out of 65,016
    • In genomics: 3,826 out of 4,446
  • Year to date:
    • Site-wide: 58,682 out of 65,016
  • Since beginning of last month:
    • Site-wide: 63,439 out of 65,016

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 182 times
  • Download rankings, all-time:
    • Site-wide: 48,741 out of 65,016
    • In bioinformatics: 5,376 out of 6,438
  • Year to date:
    • Site-wide: 63,123 out of 65,016
  • Since beginning of last month:
    • Site-wide: 59,325 out of 65,016

HPCI: A Perl module for writing cluster-portable bioinformatics pipelines

bioinformatics more details view paper
  • Downloaded 161 times
  • Download rankings, all-time:
    • Site-wide: 51,674 out of 65,016
    • In bioinformatics: 5,599 out of 6,438
  • Year to date:
    • Site-wide: 57,072 out of 65,016
  • Since beginning of last month:
    • Site-wide: 40,228 out of 65,016

Identifying TCDD-resistance genes via murine and rat comparative genomics and transcriptomics

genomics more details view paper
  • Downloaded 119 times
  • Download rankings, all-time:
    • Site-wide: 57,307 out of 65,016
    • In genomics: 4,185 out of 4,446
  • Year to date:
    • Site-wide: 39,127 out of 65,016
  • Since beginning of last month:
    • Site-wide: 49,281 out of 65,016

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