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Author: Nir Yosef

Rankings

  • All-time downloads: 60,988 (rank: 542 out of 362,767)
  • Categories:
    • bioinformatics: 29,342 (rank: 78 out of 31,380)
    • cancer biology: 1,460 (rank: 2,654 (tie) out of 24,690)
    • cell biology: 13,374 (rank: 31 out of 26,608)
    • genomics: 11,032 (rank: 1,223 out of 39,192)
    • immunology: 5,780 (rank: 261 out of 18,877)

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Preprints

The Human Cell Atlas

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Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

bioinformatics more details view paper
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Probabilistic Harmonization and Annotation of Single-cell Transcriptomics Data with Deep Generative Models

bioinformatics more details view paper
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Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

immunology more details view paper
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Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
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Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

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Meta-analysis of massive parallel reporter assay enables functional regulatory elements prediction

genomics more details view paper
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A Joint Model of RNA Expression and Surface Protein Abundance in Single Cells

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    • In bioinformatics: 881 out of 8,081
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Functional Interpretation of Single-Cell Similarity Maps

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    • In bioinformatics: 949 out of 8,081
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FastProject: A Tool for Low-Dimensional Analysis of Single-Cell RNA-Seq Data

genomics more details view paper
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Targeted reconstruction of T cell receptor sequence from single cell RNA-sequencing links CDR3 length to T cell differentiation state

bioinformatics more details view paper
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Impulse model-based differential expression analysis of time course sequencing data

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    • In bioinformatics: 1,006 out of 8,081
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Continuous lineage recording reveals rapid, multidirectional metastasis in a lung cancer xenograft model in mouse

cancer biology more details view paper
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    • In cancer biology: 148 out of 2,950
  • Year to date:
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Massively parallel characterization of regulatory dynamics during neural induction

genomics more details view paper
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    • In genomics: 1,080 out of 5,443
  • Year to date:
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    • Site-wide: 20,036 out of 84,264

Deep Generative Models for Detecting Differential Expression in Single Cells

cell biology more details view paper
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    • Site-wide: 7,844 out of 84,264
    • In cell biology: 266 out of 4,283
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    • Site-wide: 2,994 out of 84,264

Inference of Single-Cell Phylogenies from Lineage Tracing Data

bioinformatics more details view paper
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    • In bioinformatics: 1,631 out of 8,081
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Coverage-dependent bias creates the appearance of binary splicing in single cells

genomics more details view paper
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Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

bioinformatics more details view paper
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Joint probabilistic modeling of paired transcriptome and proteome measurements in single cells

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    • In bioinformatics: 1,744 out of 8,081
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    • Site-wide: 479 out of 84,264

Mango: Distributed Visualization for Genomic Analysis

bioinformatics more details view paper
  • Downloaded 976 times
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    • In bioinformatics: 1,827 out of 8,081
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    • Site-wide: 50,095 out of 84,264

SymSim: simulating multi-faceted variability in single cell RNA sequencing

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    • In bioinformatics: 1,926 out of 8,081
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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
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Polyamine metabolism regulates the T cell epigenome through hypusination

immunology more details view paper
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Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation

genomics more details view paper
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Identifying Informative Gene Modules Across Modalities of Single Cell Genomics

bioinformatics more details view paper
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Reconstructing B cell receptor sequences from short-read single cell RNA-sequencing with BRAPeS

bioinformatics more details view paper
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    • In bioinformatics: 3,073 out of 8,081
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    • Site-wide: 49,948 out of 84,264

MPRAnalyze - A statistical framework for Massively Parallel Reporter Assays

bioinformatics more details view paper
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    • In bioinformatics: 3,783 out of 8,081
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Oleic acid Induces Tissue Resident FoxP3 Regulatory T cell Lineage Stability and Suppressive Functions

immunology more details view paper
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    • Site-wide: 1,478 out of 84,264

Cytoplasmic mRNA decay factors modulate RNA polymerase II processivity in 5' and 3' gene regions in yeast

genomics more details view paper
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    • Site-wide: 32,342 out of 84,264

Connectivity Problems on Heterogeneous Graphs

bioinformatics more details view paper
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