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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,506 bioRxiv papers from 264,779 authors.

Author: Nir Yosef

Rankings

  • All-time downloads: 40,192 (rank: 332 out of 264,779)
  • Categories:
    • bioinformatics: 19,000 (rank: 79 out of 23,124)
    • cell biology: 11,609 (rank: 46 (tie) out of 16,783)
    • genomics: 6,963 (rank: 1,499 out of 30,243)
    • immunology: 2,620 (rank: 239 (tie) out of 11,212)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,609 times
  • Download rankings, all-time:
    • Site-wide: 73 out of 57,506
    • In cell biology: 2 out of 2,723
  • Year to date:
    • Site-wide: 4,857 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,869 out of 57,506

Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

bioinformatics more details view paper
  • Downloaded 7,338 times
  • Download rankings, all-time:
    • Site-wide: 174 out of 57,506
    • In bioinformatics: 32 out of 5,863
  • Year to date:
    • Site-wide: 476 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,772 out of 57,506

Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models

bioinformatics more details view paper
  • Downloaded 3,000 times
  • Download rankings, all-time:
    • Site-wide: 986 out of 57,506
    • In bioinformatics: 201 out of 5,863
  • Year to date:
    • Site-wide: 126 out of 57,506
  • Since beginning of last month:
    • Site-wide: 393 out of 57,506

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

immunology more details view paper
  • Downloaded 2,620 times
  • Download rankings, all-time:
    • Site-wide: 1,270 out of 57,506
    • In immunology: 15 out of 1,372
  • Year to date:
    • Site-wide: 336 out of 57,506
  • Since beginning of last month:
    • Site-wide: 813 out of 57,506

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 2,586 times
  • Download rankings, all-time:
    • Site-wide: 1,294 out of 57,506
    • In genomics: 307 out of 4,027
  • Year to date:
    • Site-wide: 1,546 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,762 out of 57,506

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,025 times
  • Download rankings, all-time:
    • Site-wide: 1,985 out of 57,506
    • In bioinformatics: 413 out of 5,863
  • Year to date:
    • Site-wide: 17,000 out of 57,506
  • Since beginning of last month:
    • Site-wide: 21,877 out of 57,506

FastProject: A Tool for Low-Dimensional Analysis of Single-Cell RNA-Seq Data

genomics more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 3,541 out of 57,506
    • In genomics: 665 out of 4,027
  • Year to date:
    • Site-wide: 47,527 out of 57,506
  • Since beginning of last month:
    • Site-wide: 45,605 out of 57,506

Targeted reconstruction of T cell receptor sequence from single cell RNA-sequencing links CDR3 length to T cell differentiation state

bioinformatics more details view paper
  • Downloaded 1,374 times
  • Download rankings, all-time:
    • Site-wide: 3,859 out of 57,506
    • In bioinformatics: 774 out of 5,863
  • Year to date:
    • Site-wide: 30,151 out of 57,506
  • Since beginning of last month:
    • Site-wide: 31,590 out of 57,506

Meta-analysis of massive parallel reporter assay enables functional regulatory elements prediction

genomics more details view paper
  • Downloaded 1,369 times
  • Download rankings, all-time:
    • Site-wide: 3,876 out of 57,506
    • In genomics: 718 out of 4,027
  • Year to date:
    • Site-wide: 4,873 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,017 out of 57,506

Functional Interpretation of Single-Cell Similarity Maps

bioinformatics more details view paper
  • Downloaded 1,302 times
  • Download rankings, all-time:
    • Site-wide: 4,210 out of 57,506
    • In bioinformatics: 843 out of 5,863
  • Year to date:
    • Site-wide: 5,202 out of 57,506
  • Since beginning of last month:
    • Site-wide: 7,664 out of 57,506

Impulse model-based differential expression analysis of time course sequencing data

bioinformatics more details view paper
  • Downloaded 1,286 times
  • Download rankings, all-time:
    • Site-wide: 4,295 out of 57,506
    • In bioinformatics: 861 out of 5,863
  • Year to date:
    • Site-wide: 24,350 out of 57,506
  • Since beginning of last month:
    • Site-wide: 19,289 out of 57,506

Massively parallel characterization of regulatory dynamics during neural induction

genomics more details view paper
  • Downloaded 1,011 times
  • Download rankings, all-time:
    • Site-wide: 6,366 out of 57,506
    • In genomics: 1,061 out of 4,027
  • Year to date:
    • Site-wide: 9,147 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,151 out of 57,506

Mango: Distributed Visualization for Genomic Analysis

bioinformatics more details view paper
  • Downloaded 788 times
  • Download rankings, all-time:
    • Site-wide: 9,397 out of 57,506
    • In bioinformatics: 1,650 out of 5,863
  • Year to date:
    • Site-wide: 16,177 out of 57,506
  • Since beginning of last month:
    • Site-wide: 18,077 out of 57,506

SymSim: simulating multi-faceted variability in single cell RNA sequencing

bioinformatics more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 10,148 out of 57,506
    • In bioinformatics: 1,757 out of 5,863
  • Year to date:
    • Site-wide: 5,335 out of 57,506
  • Since beginning of last month:
    • Site-wide: 6,836 out of 57,506

Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation

genomics more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 15,457 out of 57,506
    • In genomics: 1,975 out of 4,027
  • Year to date:
    • Site-wide: 16,199 out of 57,506
  • Since beginning of last month:
    • Site-wide: 22,007 out of 57,506

Reconstructing B cell receptor sequences from short-read single cell RNA-sequencing with BRAPeS

bioinformatics more details view paper
  • Downloaded 504 times
  • Download rankings, all-time:
    • Site-wide: 17,309 out of 57,506
    • In bioinformatics: 2,642 out of 5,863
  • Year to date:
    • Site-wide: 9,638 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,449 out of 57,506

MPRAnalyze - A statistical framework for Massively Parallel Reporter Assays

bioinformatics more details view paper
  • Downloaded 354 times
  • Download rankings, all-time:
    • Site-wide: 25,563 out of 57,506
    • In bioinformatics: 3,515 out of 5,863
  • Year to date:
    • Site-wide: 6,274 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,247 out of 57,506

Connectivity Problems on Heterogeneous Graphs

bioinformatics more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 31,450 out of 57,506
    • In bioinformatics: 4,036 out of 5,863
  • Year to date:
    • Site-wide: 41,386 out of 57,506
  • Since beginning of last month:
    • Site-wide: 48,346 out of 57,506

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