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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,258 bioRxiv papers from 242,323 authors.

Author: Nir Yosef

Rankings

  • All-time downloads: 37,979 (rank: 331 out of 242,323)
  • Categories:
    • bioinformatics: 17,701 (rank: 81 out of 21,394)
    • cell biology: 11,515 (rank: 44 (tie) out of 15,090)
    • genomics: 6,521 (rank: 1,495 out of 28,035)
    • immunology: 2,242 (rank: 229 (tie) out of 9,566)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,515 times
  • Download rankings, all-time:
    • Site-wide: 68 out of 52,258
    • In cell biology: 2 out of 2,462
  • Year to date:
    • Site-wide: 4,566 out of 52,258
  • Since beginning of last month:
    • Site-wide: 5,194 out of 52,258

Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing

bioinformatics more details view paper
  • Downloaded 7,093 times
  • Download rankings, all-time:
    • Site-wide: 170 out of 52,258
    • In bioinformatics: 31 out of 5,476
  • Year to date:
    • Site-wide: 393 out of 52,258
  • Since beginning of last month:
    • Site-wide: 848 out of 52,258

Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models

bioinformatics more details view paper
  • Downloaded 2,427 times
  • Download rankings, all-time:
    • Site-wide: 1,295 out of 52,258
    • In bioinformatics: 263 out of 5,476
  • Year to date:
    • Site-wide: 109 out of 52,258
  • Since beginning of last month:
    • Site-wide: 175 out of 52,258

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 2,380 times
  • Download rankings, all-time:
    • Site-wide: 1,358 out of 52,258
    • In genomics: 320 out of 3,742
  • Year to date:
    • Site-wide: 1,601 out of 52,258
  • Since beginning of last month:
    • Site-wide: 1,654 out of 52,258

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

immunology more details view paper
  • Downloaded 2,242 times
  • Download rankings, all-time:
    • Site-wide: 1,508 out of 52,258
    • In immunology: 16 out of 1,204
  • Year to date:
    • Site-wide: 322 out of 52,258
  • Since beginning of last month:
    • Site-wide: 332 out of 52,258

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 1,968 times
  • Download rankings, all-time:
    • Site-wide: 1,889 out of 52,258
    • In bioinformatics: 400 out of 5,476
  • Year to date:
    • Site-wide: 17,277 out of 52,258
  • Since beginning of last month:
    • Site-wide: 19,494 out of 52,258

FastProject: A Tool for Low-Dimensional Analysis of Single-Cell RNA-Seq Data

genomics more details view paper
  • Downloaded 1,429 times
  • Download rankings, all-time:
    • Site-wide: 3,215 out of 52,258
    • In genomics: 633 out of 3,742
  • Year to date:
    • Site-wide: 40,432 out of 52,258
  • Since beginning of last month:
    • Site-wide: 42,700 out of 52,258

Targeted reconstruction of T cell receptor sequence from single cell RNA-sequencing links CDR3 length to T cell differentiation state

bioinformatics more details view paper
  • Downloaded 1,345 times
  • Download rankings, all-time:
    • Site-wide: 3,564 out of 52,258
    • In bioinformatics: 718 out of 5,476
  • Year to date:
    • Site-wide: 26,801 out of 52,258
  • Since beginning of last month:
    • Site-wide: 30,887 out of 52,258

Meta-analysis of massive parallel reporter assay enables functional regulatory elements prediction

genomics more details view paper
  • Downloaded 1,271 times
  • Download rankings, all-time:
    • Site-wide: 3,908 out of 52,258
    • In genomics: 726 out of 3,742
  • Year to date:
    • Site-wide: 4,667 out of 52,258
  • Since beginning of last month:
    • Site-wide: 3,117 out of 52,258

Impulse model-based differential expression analysis of time course sequencing data

bioinformatics more details view paper
  • Downloaded 1,248 times
  • Download rankings, all-time:
    • Site-wide: 4,021 out of 52,258
    • In bioinformatics: 815 out of 5,476
  • Year to date:
    • Site-wide: 22,637 out of 52,258
  • Since beginning of last month:
    • Site-wide: 23,081 out of 52,258

Functional Interpretation of Single-Cell Similarity Maps

bioinformatics more details view paper
  • Downloaded 1,211 times
  • Download rankings, all-time:
    • Site-wide: 4,190 out of 52,258
    • In bioinformatics: 850 out of 5,476
  • Year to date:
    • Site-wide: 4,883 out of 52,258
  • Since beginning of last month:
    • Site-wide: 6,200 out of 52,258

Massively parallel characterization of regulatory dynamics during neural induction

genomics more details view paper
  • Downloaded 942 times
  • Download rankings, all-time:
    • Site-wide: 6,309 out of 52,258
    • In genomics: 1,051 out of 3,742
  • Year to date:
    • Site-wide: 8,673 out of 52,258
  • Since beginning of last month:
    • Site-wide: 6,442 out of 52,258

Mango: Distributed Visualization for Genomic Analysis

bioinformatics more details view paper
  • Downloaded 746 times
  • Download rankings, all-time:
    • Site-wide: 9,016 out of 52,258
    • In bioinformatics: 1,606 out of 5,476
  • Year to date:
    • Site-wide: 14,268 out of 52,258
  • Since beginning of last month:
    • Site-wide: 13,015 out of 52,258

SymSim: simulating multi-faceted variability in single cell RNA sequencing

bioinformatics more details view paper
  • Downloaded 653 times
  • Download rankings, all-time:
    • Site-wide: 10,847 out of 52,258
    • In bioinformatics: 1,859 out of 5,476
  • Year to date:
    • Site-wide: 5,162 out of 52,258
  • Since beginning of last month:
    • Site-wide: 3,991 out of 52,258

Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation

genomics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 15,418 out of 52,258
    • In genomics: 1,958 out of 3,742
  • Year to date:
    • Site-wide: 15,542 out of 52,258
  • Since beginning of last month:
    • Site-wide: 11,549 out of 52,258

Reconstructing B cell receptor sequences from short-read single cell RNA-sequencing with BRAPeS

bioinformatics more details view paper
  • Downloaded 450 times
  • Download rankings, all-time:
    • Site-wide: 17,448 out of 52,258
    • In bioinformatics: 2,655 out of 5,476
  • Year to date:
    • Site-wide: 8,300 out of 52,258
  • Since beginning of last month:
    • Site-wide: 6,440 out of 52,258

MPRAnalyze - A statistical framework for Massively Parallel Reporter Assays

bioinformatics more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 26,318 out of 52,258
    • In bioinformatics: 3,572 out of 5,476
  • Year to date:
    • Site-wide: 5,148 out of 52,258
  • Since beginning of last month:
    • Site-wide: 7,878 out of 52,258

Connectivity Problems on Heterogeneous Graphs

bioinformatics more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 29,088 out of 52,258
    • In bioinformatics: 3,830 out of 5,476
  • Year to date:
    • Site-wide: 35,432 out of 52,258
  • Since beginning of last month:
    • Site-wide: 32,608 out of 52,258

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