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Author: Subha Madhavan

Rankings

  • All-time downloads: 12,268 (rank: 20,638 (tie) )
  • Categories:
    • bioinformatics: 10,574 (rank: 943 )
    • genomics: 1,079 (rank: 24,557 (tie) )
    • health informatics: 615 (rank: 1,755 (tie) )

Downloads per author, site-wide

Preprints

A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

bioinformatics more details view paper
  • Downloaded 3,584 times
  • Download rankings, all-time:
    • Site-wide: 4,236
    • In bioinformatics: 397
  • Year to date:
    • Site-wide: 28,068
  • Since beginning of last month:
    • Site-wide: 12,118

neoantigenR: An annotation based pipeline for tumor neoantigen identification from sequencing data

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  • Downloaded 2,682 times
  • Download rankings, all-time:
    • Site-wide: 6,449
    • In bioinformatics: 653
  • Year to date:
    • Site-wide: 50,831
  • Since beginning of last month:
    • Site-wide: 57,406

viGEN: An open source pipeline for the detection and quantification of viral RNA in human tumors

bioinformatics more details view paper
  • Downloaded 1,299 times
  • Download rankings, all-time:
    • Site-wide: 19,175
    • In bioinformatics: 2,170
  • Year to date:
    • Site-wide: 91,309
  • Since beginning of last month:
    • Site-wide: 51,842

Automated Identification of Patients with Immune-related Adverse Events from Clinical Notes using Word embedding and Machine Learning

health informatics more details view paper
  • Downloaded 615 times
  • Download rankings, all-time:
    • Site-wide: 56,818
    • In health informatics: 234
  • Year to date:
    • Site-wide: 23,044
  • Since beginning of last month:
    • Site-wide: 12,998

Exploration of the immune cell landscape in brain cancer utilizing gene expression and copy number data

bioinformatics more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 63,229
    • In bioinformatics: 6,108
  • Year to date:
    • Site-wide: 108,224
  • Since beginning of last month:
    • Site-wide: 117,792

An evidence-based network approach to recommending targeted cancer therapies

bioinformatics more details view paper
  • Downloaded 558 times
  • Download rankings, all-time:
    • Site-wide: 64,053
    • In bioinformatics: 6,158
  • Year to date:
    • Site-wide: 113,169
  • Since beginning of last month:
    • Site-wide: 63,564

Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs

genomics more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 65,923
    • In genomics: 4,644
  • Year to date:
    • Site-wide: 116,559
  • Since beginning of last month:
    • Site-wide: 135,738

Clingen Cancer Somatic Working Group: standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

bioinformatics more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 71,138
    • In bioinformatics: 6,691
  • Year to date:
    • Site-wide: 99,309
  • Since beginning of last month:
    • Site-wide: 111,489

eGARD: Extracting associations between genomic anomalies and drug responses from text

bioinformatics more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 71,966
    • In bioinformatics: 6,731
  • Year to date:
    • Site-wide: 161,172
  • Since beginning of last month:
    • Site-wide: 161,834

The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer

bioinformatics more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 95,325
    • In bioinformatics: 8,280
  • Year to date:
    • Site-wide: 121,484
  • Since beginning of last month:
    • Site-wide: 143,498

Computational genomic analysis of the lung tissue microenvironment in COVID-19 patients

genomics more details view paper
  • Downloaded 298 times
  • Download rankings, all-time:
    • Site-wide: 116,830
    • In genomics: 6,609
  • Year to date:
    • Site-wide: 34,418
  • Since beginning of last month:
    • Site-wide: 111,142

SNP2SIM: A modular workflow for standardizing molecular simulation and functional analysis of protein variants

bioinformatics more details view paper
  • Downloaded 258 times
  • Download rankings, all-time:
    • Site-wide: 127,365
    • In bioinformatics: 10,171
  • Year to date:
    • Site-wide: 162,553
  • Since beginning of last month:
    • Site-wide: 146,387

Evolution of the open-access CIViC knowledgebase is driven by the needsof the cancer variant interpretation community

genomics more details view paper
  • Downloaded 236 times
  • Download rankings, all-time:
    • Site-wide: 133,143
    • In genomics: 7,144
  • Year to date:
    • Site-wide: 46,929
  • Since beginning of last month:
    • Site-wide: 72,594

MACE2K: A Text-Mining Tool to Extract Literature-based Evidence for Variant Interpretation using Machine Learning

bioinformatics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 135,742
    • In bioinformatics: 10,662
  • Year to date:
    • Site-wide: 89,871
  • Since beginning of last month:
    • Site-wide: 115,930

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