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Author: Debarka Sengupta

Rankings

  • All-time downloads: 19,438 (rank: 14,755 )
  • Categories:
    • bioinformatics: 5,538 (rank: 2,758 )
    • cancer biology: 585 (rank: 21,905 (tie) )
    • genomics: 7,094 (rank: 3,628 )
    • infectious diseases: 4,914 (rank: 12,184 )
    • systems biology: 226 (rank: 15,533 (tie) )

Downloads per author, site-wide

Preprints

Recent smell loss is the best predictor of COVID-19: a preregistered, cross-sectional study

infectious diseases more details view paper
  • Downloaded 3,762 times
  • Download rankings, all-time:
    • Site-wide: 4,712
    • In infectious diseases: 966
  • Year to date:
    • Site-wide: 15,022
  • Since beginning of last month:
    • Site-wide: 29,887

Fast, scalable and accurate differential expression analysis for single cells

genomics more details view paper
  • Downloaded 3,315 times
  • Download rankings, all-time:
    • Site-wide: 5,658
    • In genomics: 503
  • Year to date:
    • Site-wide: 85,063
  • Since beginning of last month:
    • Site-wide: 72,409

Machine learning based prediction of antibiotic sensitivity in patients with critical illness

infectious diseases more details view paper
  • Downloaded 1,329 times
  • Download rankings, all-time:
    • Site-wide: 22,144
    • In infectious diseases: 2,303
  • Year to date:
    • Site-wide: 33,936
  • Since beginning of last month:
    • Site-wide: 41,093

dropClust: Efficient clustering of ultra-large scRNA-seq data

genomics more details view paper
  • Downloaded 1,229 times
  • Download rankings, all-time:
    • Site-wide: 25,048
    • In genomics: 2,058
  • Year to date:
    • Site-wide: 186,565
  • Since beginning of last month:
    • Site-wide: 166,064

ROSeq: Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data

genomics more details view paper
  • Downloaded 1,154 times
  • Download rankings, all-time:
    • Site-wide: 27,579
    • In genomics: 2,315
  • Year to date:
    • Site-wide: 73,856
  • Since beginning of last month:
    • Site-wide: 76,574

deepMc: deep Matrix Completion for imputation of single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 1,096 times
  • Download rankings, all-time:
    • Site-wide: 29,803
    • In bioinformatics: 3,143
  • Year to date:
    • Site-wide: 76,725
  • Since beginning of last month:
    • Site-wide: 56,225

McImpute: Matrix completion based imputation for single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 1,095 times
  • Download rankings, all-time:
    • Site-wide: 29,841
    • In bioinformatics: 3,035
  • Year to date:
    • Site-wide: 150,792
  • Since beginning of last month:
    • Site-wide: 137,130

Deep learning discerns cancer mutation exclusivity

bioinformatics more details view paper
  • Downloaded 982 times
  • Download rankings, all-time:
    • Site-wide: 35,137
    • In bioinformatics: 3,520
  • Year to date:
    • Site-wide: 114,874
  • Since beginning of last month:
    • Site-wide: 179,312

FORKS: Finding Orderings Robustly using K-means and Steiner trees

bioinformatics more details view paper
  • Downloaded 971 times
  • Download rankings, all-time:
    • Site-wide: 35,722
    • In bioinformatics: 3,570
  • Year to date:
    • Site-wide: 141,870
  • Since beginning of last month:
    • Site-wide: 176,808

UniPath: A uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles

genomics more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 38,252
    • In genomics: 2,884
  • Year to date:
    • Site-wide: 146,117
  • Since beginning of last month:
    • Site-wide: 127,185

dropClust2: An R package for resource efficient analysis of large scale single cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 648 times
  • Download rankings, all-time:
    • Site-wide: 64,001
    • In bioinformatics: 5,729
  • Year to date:
    • Site-wide: 184,788
  • Since beginning of last month:
    • Site-wide: 176,254

Integrative analysis and machine learning based characterization of single circulating tumor cells

genomics more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 72,680
    • In genomics: 4,754
  • Year to date:
    • Site-wide: 129,502
  • Since beginning of last month:
    • Site-wide: 94,561

Gene expression based inference of drug resistance in cancer

cancer biology more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 76,894
    • In cancer biology: 3,100
  • Year to date:
    • Site-wide: 8,945
  • Since beginning of last month:
    • Site-wide: 18,404

Artificial Intelligence uncovers carcinogenic human metabolites

bioinformatics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 93,616
    • In bioinformatics: 8,435
  • Year to date:
    • Site-wide: 26,572
  • Since beginning of last month:
    • Site-wide: 74,958

Marker-free characterization of single live circulating tumor cell full-length transcriptomes

bioinformatics more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 101,177
    • In bioinformatics: 10,856
  • Year to date:
    • Site-wide: 12,182
  • Since beginning of last month:
    • Site-wide: 22,511

A search-engine for single-cell epigenome profiles for multi-purpose applications

systems biology more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 148,531
    • In systems biology: 3,034
  • Year to date:
    • Site-wide: 89,429
  • Since beginning of last month:
    • Site-wide: 88,697

A visual atlas of genes tissue-specific pathological roles

bioinformatics more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 153,456
    • In bioinformatics: 11,782
  • Year to date:
    • Site-wide: 14,764
  • Since beginning of last month:
    • Site-wide: 49,651

Microfluidic system-based time-course tracking of physical proximity between cells and its effect on gene expression for elucidating live single cancer-immune cell interactions

cancer biology more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 155,264
    • In cancer biology: 4,701
  • Year to date:
    • Site-wide: 55,161
  • Since beginning of last month:
    • Site-wide: 75,657

A combined experimental-computational approach uncovers a role for the Golgi matrix protein Giantin in breast cancer progression

cancer biology more details view paper
  • Downloaded 102 times
  • Download rankings, all-time:
    • Site-wide: 186,005
    • In cancer biology: None
  • Year to date:
    • Site-wide: 48,163
  • Since beginning of last month:
    • Site-wide: 26,667

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