Author: Rick Farouni

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Preprints

Bioconda: A sustainable and comprehensive software distribution for the life sciences

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  • In bioinformatics: 116 out of 8,443
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  • Site-wide: 3,687 out of 89,532
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AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

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  • In bioinformatics: 923 out of 8,443
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Legacy Data Confounds Genomics Studies

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  • In bioinformatics: 1,152 out of 8,443
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  • Site-wide: 28,621 out of 89,532

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

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  • Site-wide: 42,982 out of 89,532

Analysis and comparison of genome editing using CRISPResso2

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  • In bioinformatics: 1,387 out of 8,443
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Statistical modeling, estimation, and remediation of sample index hopping in multiplexed droplet-based single-cell RNA-seq data

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  • In bioinformatics: 1,741 out of 8,443
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  • Site-wide: 15,169 out of 89,532

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

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  • Site-wide: 32,402 out of 89,532

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

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  • Site-wide: 32,051 out of 89,532
  • In bioinformatics: 4,125 out of 8,443
• Year to date:
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  • Site-wide: 75,858 out of 89,532