Author: Yanxiao Zhang

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Preprints

SnapATAC: A Comprehensive Analysis Package for Single Cell ATAC-seq

• Downloaded 9,928 times
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  • Site-wide: 1,155
  • In bioinformatics: 53
• Year to date:
  • Site-wide: 19,050
• Since beginning of last month:
  • Site-wide: 12,113

Single nucleus analysis of the chromatin landscape in mouse forebrain development

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  • Site-wide: 2,616
  • In genomics: 229
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 106,645

Systematic mapping of chromatin state landscapes during mouse development

• Downloaded 4,917 times
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  • Site-wide: 2,882
  • In genomics: 264
• Year to date:
  • Site-wide: 114,916
• Since beginning of last month:
  • Site-wide: 36,125

3D Chromatin Architecture Remodeling during Human Cardiomyocyte Differentiation Reveals A Role Of HERV-H In Demarcating Chromatin Domains

• Downloaded 3,317 times
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  • Site-wide: 4,963
  • In genomics: 477
• Year to date:
  • Site-wide: 25,294
• Since beginning of last month:
  • Site-wide: 74,187

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

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  • Site-wide: 7,032
  • In genomics: 700
• Year to date:
  • Site-wide: 84,223
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  • Site-wide: 32,764

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

• Downloaded 2,077 times
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  • Site-wide: 9,778
  • In molecular biology: 243
• Year to date:
  • Site-wide: 22,712
• Since beginning of last month:
  • Site-wide: 41,349

Cardiac Cell Type-Specific Gene Regulatory Programs and Disease Risk Association

• Downloaded 1,755 times
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  • Site-wide: 12,562
  • In genomics: 1,231
• Year to date:
  • Site-wide: 26,679
• Since beginning of last month:
  • Site-wide: 84,150

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

• Downloaded 1,292 times
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  • Site-wide: 20,034
  • In bioinformatics: 2,244
• Year to date:
  • Site-wide: 102,193
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  • Site-wide: 40,066

Genome-wide association and multi-omic analyses reveal new mechanisms for Heart Failure

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  • Site-wide: 22,705
  • In genetic and genomic medicine: 108
• Year to date:
  • Site-wide: 60,583
• Since beginning of last month:
  • Site-wide: 31,177

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

• Downloaded 839 times
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  • Site-wide: 38,193
  • In bioinformatics: 4,069
• Year to date:
  • Site-wide: None
• Since beginning of last month:
  • Site-wide: 68,403

Proteome plasticity in response to persistent environmental change

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  • Site-wide: 84,113
  • In molecular biology: 2,465
• Year to date:
  • Site-wide: 30,227
• Since beginning of last month:
  • Site-wide: 39,683