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Author: Hidewaki Nakagawa

  • Most recently observed institution: RIKEN Center for Integrative Medical Sciences

Rankings

  • All-time downloads: 27,720 (rank: 1,784 out of 404,161)
  • Categories:
    • bioinformatics: 802 (rank: 13,949 (tie) out of 34,272)
    • cancer biology: 5,196 (rank: 379 out of 28,183)
    • genetics: 3,095 (rank: 5,239 (tie) out of 36,792)
    • genomics: 18,627 (rank: 493 out of 42,763)

Downloads per author, site-wide

Preprints

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

genomics more details view paper
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    • Site-wide: 799 out of 94,912
    • In genomics: 161 out of 5,955
  • Year to date:
    • Site-wide: 3,320 out of 94,912
  • Since beginning of last month:
    • Site-wide: 7,057 out of 94,912

Mutational signatures associated with tobacco smoking in human cancer

cancer biology more details view paper
  • Downloaded 3,399 times
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    • Site-wide: 1,581 out of 94,912
    • In cancer biology: 39 out of 3,367
  • Year to date:
    • Site-wide: 43,486 out of 94,912
  • Since beginning of last month:
    • Site-wide: 37,604 out of 94,912

Immuno-genomic Pan-cancer Landscape Reveals Diverse Immune Escape Mechanisms and Immuno-Editing Histories

genomics more details view paper
  • Downloaded 2,600 times
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    • Site-wide: 2,522 out of 94,912
    • In genomics: 468 out of 5,955
  • Year to date:
    • Site-wide: 6,112 out of 94,912
  • Since beginning of last month:
    • Site-wide: 8,813 out of 94,912

Comprehensive Molecular Characterization of Mitochondrial Genomes in Human Cancers

genomics more details view paper
  • Downloaded 2,449 times
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    • Site-wide: 2,782 out of 94,912
    • In genomics: 511 out of 5,955
  • Year to date:
    • Site-wide: 7,128 out of 94,912
  • Since beginning of last month:
    • Site-wide: 26,207 out of 94,912

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,358 times
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    • Site-wide: 2,968 out of 94,912
    • In genomics: 556 out of 5,955
  • Year to date:
    • Site-wide: 86,090 out of 94,912
  • Since beginning of last month:
    • Site-wide: 67,937 out of 94,912

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,193 times
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    • Site-wide: 3,351 out of 94,912
    • In genomics: 604 out of 5,955
  • Year to date:
    • Site-wide: 18,738 out of 94,912
  • Since beginning of last month:
    • Site-wide: 23,462 out of 94,912

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

genomics more details view paper
  • Downloaded 2,088 times
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    • Site-wide: 3,632 out of 94,912
    • In genomics: 646 out of 5,955
  • Year to date:
    • Site-wide: 63,580 out of 94,912
  • Since beginning of last month:
    • Site-wide: 35,079 out of 94,912

Large scale genome-wide association study in a Japanese population identified 45 novel susceptibility loci for 22 diseases

genetics more details view paper
  • Downloaded 1,736 times
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    • Site-wide: 4,907 out of 94,912
    • In genetics: 355 out of 4,824
  • Year to date:
    • Site-wide: 2,549 out of 94,912
  • Since beginning of last month:
    • Site-wide: 3,625 out of 94,912

Whole genome and RNA sequencing of 1,220 cancers reveals hundreds of genes deregulated by rearrangement of cis-regulatory elements

genomics more details view paper
  • Downloaded 1,485 times
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    • Site-wide: 6,374 out of 94,912
    • In genomics: 999 out of 5,955
  • Year to date:
    • Site-wide: 40,231 out of 94,912
  • Since beginning of last month:
    • Site-wide: 63,034 out of 94,912

Comprehensive Analysis of Indels in Whole-genome Microsatellite Regions and Microsatellite Instability across 21 Cancer Types

cancer biology more details view paper
  • Downloaded 1,127 times
  • Download rankings, all-time:
    • Site-wide: 10,114 out of 94,912
    • In cancer biology: 272 out of 3,367
  • Year to date:
    • Site-wide: 23,081 out of 94,912
  • Since beginning of last month:
    • Site-wide: 28,333 out of 94,912

Quantifying Immune-Based Counterselection of Somatic Mutations

genetics more details view paper
  • Downloaded 674 times
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    • Site-wide: 22,480 out of 94,912
    • In genetics: 1,406 out of 4,824
  • Year to date:
    • Site-wide: 65,092 out of 94,912
  • Since beginning of last month:
    • Site-wide: 72,285 out of 94,912

In-depth characterization of the cisplatin mutational signature in human cell lines and in esophageal and liver tumors

cancer biology more details view paper
  • Downloaded 670 times
  • Download rankings, all-time:
    • Site-wide: 22,691 out of 94,912
    • In cancer biology: 694 out of 3,367
  • Year to date:
    • Site-wide: 72,302 out of 94,912
  • Since beginning of last month:
    • Site-wide: 69,335 out of 94,912

Endogenization and excision of human herpesvirus 6 in human genomes

genetics more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 27,886 out of 94,912
    • In genetics: 1,697 out of 4,824
  • Year to date:
    • Site-wide: 7,244 out of 94,912
  • Since beginning of last month:
    • Site-wide: 19,332 out of 94,912

ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data

bioinformatics more details view paper
  • Downloaded 523 times
  • Download rankings, all-time:
    • Site-wide: 31,570 out of 94,912
    • In bioinformatics: 4,089 out of 8,837
  • Year to date:
    • Site-wide: 44,226 out of 94,912
  • Since beginning of last month:
    • Site-wide: 53,956 out of 94,912

Somatic mutation landscape reveals differential variability of cell-of-origin for primary liver cancer

genomics more details view paper
  • Downloaded 431 times
  • Download rankings, all-time:
    • Site-wide: 39,824 out of 94,912
    • In genomics: 3,702 out of 5,955
  • Year to date:
    • Site-wide: 60,428 out of 94,912
  • Since beginning of last month:
    • Site-wide: 85,785 out of 94,912

A multifunctional R package for identification of tumor-specific neoantigens

bioinformatics more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 59,781 out of 94,912
    • In bioinformatics: 6,448 out of 8,837
  • Year to date:
    • Site-wide: 47,397 out of 94,912
  • Since beginning of last month:
    • Site-wide: 56,179 out of 94,912

Population-wide Screening for Germline Variants of Hereditary Cancer Genes in 12K Unselected Japanese Colorectal Cancers and 27K Controls

genetics more details view paper
  • Downloaded 108 times
  • Download rankings, all-time:
    • Site-wide: 86,794 out of 94,912
    • In genetics: 4,524 out of 4,824
  • Year to date:
    • Site-wide: 45,453 out of 94,912
  • Since beginning of last month:
    • Site-wide: 35,540 out of 94,912

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