Author: Mario Stanke

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Preprints

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

• Downloaded 2,523 times
• Download rankings, all-time:
  • Site-wide: 5,259
  • In genomics: 595
• Year to date:
  • Site-wide: 55,593
• Since beginning of last month:
  • Site-wide: 72,648

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

• Downloaded 1,948 times
• Download rankings, all-time:
  • Site-wide: 7,701
  • In bioinformatics: 935
• Year to date:
  • Site-wide: 27,742
• Since beginning of last month:
  • Site-wide: 31,808

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

• Downloaded 1,475 times
• Download rankings, all-time:
  • Site-wide: 11,619
  • In genomics: 1,271
• Year to date:
  • Site-wide: 68,587
• Since beginning of last month:
  • Site-wide: 64,148

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

• Downloaded 1,186 times
• Download rankings, all-time:
  • Site-wide: 16,221
  • In genomics: 1,669
• Year to date:
  • Site-wide: 64,005
• Since beginning of last month:
  • Site-wide: 60,099

BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database

• Downloaded 752 times
• Download rankings, all-time:
  • Site-wide: 31,250
  • In bioinformatics: 3,520
• Year to date:
  • Site-wide: 8,402
• Since beginning of last month:
  • Site-wide: 13,760

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

• Downloaded 719 times
• Download rankings, all-time:
  • Site-wide: 33,246
  • In genomics: 2,926
• Year to date:
  • Site-wide: 113,300
• Since beginning of last month:
  • Site-wide: 103,015

Global, Highly Specific and Fast Filtering of Alignment Seeds

• Downloaded 304 times
• Download rankings, all-time:
  • Site-wide: 83,846
  • In bioinformatics: 7,570
• Year to date:
  • Site-wide: 91,397
• Since beginning of last month:
  • Site-wide: 97,221

VARUS: Sampling Complementary RNA Reads from the Sequence Read Archive

• Downloaded 280 times
• Download rankings, all-time:
  • Site-wide: 89,059
  • In bioinformatics: 7,893
• Year to date:
  • Site-wide: 119,541
• Since beginning of last month:
  • Site-wide: 125,399

End-to-end Learning of Evolutionary Models to Find Coding Regions in Genome Alignments

• Downloaded 247 times
• Download rankings, all-time:
  • Site-wide: 96,080
  • In bioinformatics: 8,366
• Year to date:
  • Site-wide: 7,609
• Since beginning of last month:
  • Site-wide: 1,932