Author: Nuno A. Fonseca
- ORCiD: http://orcid.org/0000-0003-4832-578X
- Most recently observed institution: EMBL-EBI
Rankings
- All-time downloads: 35,439 (rank: 3,951 )
- Categories:
- bioinformatics: 10,518 (rank: 664 )
- cancer biology: 1,411 (rank: 4,462 (tie) )
- ecology: 660 (rank: 5,912 (tie) )
- genetics: 1,860 (rank: 9,223 (tie) )
- genomics: 19,953 (rank: 514 )
- immunology: 1,037 (rank: 8,048 (tie) )
Downloads per author, site-wide
Preprints
Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes
genomics more details view paper- Downloaded 5,417 times
- Download rankings, all-time:
- Site-wide: 1,670
- In genomics: 164
- Year to date:
- Site-wide: 15,252
- Since beginning of last month:
- Site-wide: 15,764
Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types
genomics more details view paper- Downloaded 4,152 times
- Download rankings, all-time:
- Site-wide: 2,405
- In genomics: 276
- Year to date:
- Site-wide: 20,516
- Since beginning of last month:
- Site-wide: 43,150
Two independent modes of chromosome organization are revealed by cohesin removal
genomics more details view paper- Downloaded 4,037 times
- Download rankings, all-time:
- Site-wide: 2,495
- In genomics: 290
- Year to date:
- Site-wide: 71,568
- Since beginning of last month:
- Site-wide: 77,985
RNA-seq gene profiling - a systematic empirical comparison
bioinformatics more details view paper- Downloaded 4,007 times
- Download rankings, all-time:
- Site-wide: 2,523
- In bioinformatics: 233
- Year to date:
- Site-wide: 49,104
- Since beginning of last month:
- Site-wide: 86,096
iRAP - an integrated RNA-seq Analysis Pipeline
bioinformatics more details view paper- Downloaded 3,668 times
- Download rankings, all-time:
- Site-wide: 2,899
- In bioinformatics: 285
- Year to date:
- Site-wide: 37,084
- Since beginning of last month:
- Site-wide: 24,684
A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters
genomics more details view paper- Downloaded 2,495 times
- Download rankings, all-time:
- Site-wide: 5,053
- In genomics: 593
- Year to date:
- Site-wide: 34,064
- Since beginning of last month:
- Site-wide: 36,984
A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)
bioinformatics more details view paper- Downloaded 2,481 times
- Download rankings, all-time:
- Site-wide: 5,090
- In bioinformatics: 573
- Year to date:
- Site-wide: 17,959
- Since beginning of last month:
- Site-wide: 11,921
Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments
genomics more details view paper- Downloaded 2,307 times
- Download rankings, all-time:
- Site-wide: 5,674
- In genomics: 662
- Year to date:
- Site-wide: 27,585
- Since beginning of last month:
- Site-wide: 37,402
Comprehensive genome and transcriptome analysis reveals genetic basis for gene fusions in cancer
genetics more details view paper- Downloaded 1,860 times
- Download rankings, all-time:
- Site-wide: 7,752
- In genetics: 373
- Year to date:
- Site-wide: 64,134
- Since beginning of last month:
- Site-wide: 60,465
Whole genome and RNA sequencing of 1,220 cancers reveals hundreds of genes deregulated by rearrangement of cis-regulatory elements
genomics more details view paper- Downloaded 1,545 times
- Download rankings, all-time:
- Site-wide: 10,262
- In genomics: 1,140
- Year to date:
- Site-wide: 77,539
- Since beginning of last month:
- Site-wide: 60,277
Assessing the Gene Regulatory Landscape in 1,188 Human Tumors
cancer biology more details view paper- Downloaded 1,411 times
- Download rankings, all-time:
- Site-wide: 11,726
- In cancer biology: 246
- Year to date:
- Site-wide: 77,850
- Since beginning of last month:
- Site-wide: 49,689
Tumors induce de novo steroid biosynthesis in T cells to evade immunity
immunology more details view paper- Downloaded 1,037 times
- Download rankings, all-time:
- Site-wide: 18,653
- In immunology: 522
- Year to date:
- Site-wide: 64,206
- Since beginning of last month:
- Site-wide: 50,586
Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing
ecology more details view paper- Downloaded 660 times
- Download rankings, all-time:
- Site-wide: 35,231
- In ecology: 821
- Year to date:
- Site-wide: 12,131
- Since beginning of last month:
- Site-wide: 10,147
Tumour gene expression signature in primary melanoma predicts long-term outcomes: A prospective multicentre study
bioinformatics more details view paper- Downloaded 362 times
- Download rankings, all-time:
- Site-wide: 69,178
- In bioinformatics: 6,613
- Year to date:
- Site-wide: 48,189
- Since beginning of last month:
- Site-wide: 57,703
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
- 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
- 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
- 22 Jan 2019: Nature just published an article about Rxivist and our data.
- 13 Jan 2019: The Rxivist preprint is live!