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Author: Nuno A. Fonseca

Rankings

  • All-time downloads: 35,439 (rank: 3,951 )
  • Categories:
    • bioinformatics: 10,518 (rank: 664 )
    • cancer biology: 1,411 (rank: 4,462 (tie) )
    • ecology: 660 (rank: 5,912 (tie) )
    • genetics: 1,860 (rank: 9,223 (tie) )
    • genomics: 19,953 (rank: 514 )
    • immunology: 1,037 (rank: 8,048 (tie) )

Downloads per author, site-wide

Preprints

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

genomics more details view paper
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    • Site-wide: 1,670
    • In genomics: 164
  • Year to date:
    • Site-wide: 15,252
  • Since beginning of last month:
    • Site-wide: 15,764

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

genomics more details view paper
  • Downloaded 4,152 times
  • Download rankings, all-time:
    • Site-wide: 2,405
    • In genomics: 276
  • Year to date:
    • Site-wide: 20,516
  • Since beginning of last month:
    • Site-wide: 43,150

Two independent modes of chromosome organization are revealed by cohesin removal

genomics more details view paper
  • Downloaded 4,037 times
  • Download rankings, all-time:
    • Site-wide: 2,495
    • In genomics: 290
  • Year to date:
    • Site-wide: 71,568
  • Since beginning of last month:
    • Site-wide: 77,985

RNA-seq gene profiling - a systematic empirical comparison

bioinformatics more details view paper
  • Downloaded 4,007 times
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    • Site-wide: 2,523
    • In bioinformatics: 233
  • Year to date:
    • Site-wide: 49,104
  • Since beginning of last month:
    • Site-wide: 86,096

iRAP - an integrated RNA-seq Analysis Pipeline

bioinformatics more details view paper
  • Downloaded 3,668 times
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    • Site-wide: 2,899
    • In bioinformatics: 285
  • Year to date:
    • Site-wide: 37,084
  • Since beginning of last month:
    • Site-wide: 24,684

A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters

genomics more details view paper
  • Downloaded 2,495 times
  • Download rankings, all-time:
    • Site-wide: 5,053
    • In genomics: 593
  • Year to date:
    • Site-wide: 34,064
  • Since beginning of last month:
    • Site-wide: 36,984

A user’s guide to the online resources for data exploration, visualization, and discovery for the Pan-Cancer Analysis of Whole Genomes project (PCAWG)

bioinformatics more details view paper
  • Downloaded 2,481 times
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    • Site-wide: 5,090
    • In bioinformatics: 573
  • Year to date:
    • Site-wide: 17,959
  • Since beginning of last month:
    • Site-wide: 11,921

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,307 times
  • Download rankings, all-time:
    • Site-wide: 5,674
    • In genomics: 662
  • Year to date:
    • Site-wide: 27,585
  • Since beginning of last month:
    • Site-wide: 37,402

Comprehensive genome and transcriptome analysis reveals genetic basis for gene fusions in cancer

genetics more details view paper
  • Downloaded 1,860 times
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    • Site-wide: 7,752
    • In genetics: 373
  • Year to date:
    • Site-wide: 64,134
  • Since beginning of last month:
    • Site-wide: 60,465

Whole genome and RNA sequencing of 1,220 cancers reveals hundreds of genes deregulated by rearrangement of cis-regulatory elements

genomics more details view paper
  • Downloaded 1,545 times
  • Download rankings, all-time:
    • Site-wide: 10,262
    • In genomics: 1,140
  • Year to date:
    • Site-wide: 77,539
  • Since beginning of last month:
    • Site-wide: 60,277

Assessing the Gene Regulatory Landscape in 1,188 Human Tumors

cancer biology more details view paper
  • Downloaded 1,411 times
  • Download rankings, all-time:
    • Site-wide: 11,726
    • In cancer biology: 246
  • Year to date:
    • Site-wide: 77,850
  • Since beginning of last month:
    • Site-wide: 49,689

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 1,037 times
  • Download rankings, all-time:
    • Site-wide: 18,653
    • In immunology: 522
  • Year to date:
    • Site-wide: 64,206
  • Since beginning of last month:
    • Site-wide: 50,586

Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing

ecology more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 35,231
    • In ecology: 821
  • Year to date:
    • Site-wide: 12,131
  • Since beginning of last month:
    • Site-wide: 10,147

Tumour gene expression signature in primary melanoma predicts long-term outcomes: A prospective multicentre study

bioinformatics more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 69,178
    • In bioinformatics: 6,613
  • Year to date:
    • Site-wide: 48,189
  • Since beginning of last month:
    • Site-wide: 57,703

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