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Author: Chen-Shan Chin

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  • All-time downloads: 61,012 (rank: 539 out of 365,919)
  • Categories:
    • bioinformatics: 25,455 (rank: 88 out of 31,540)
    • genomics: 35,557 (rank: 187 out of 39,354)

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Preprints

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

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Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

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    • In bioinformatics: 22 out of 8,141
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    • Site-wide: 9,371 out of 85,056

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
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    • Site-wide: 17,639 out of 85,056
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    • Site-wide: 18,736 out of 85,056

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

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    • In bioinformatics: 61 out of 8,141
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Improved maize reference genome with single molecule technologies

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    • In genomics: 128 out of 5,477
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Ribbon: Visualizing complex genome alignments and structural variation

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    • In bioinformatics: 311 out of 8,141
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    • Site-wide: 6,983 out of 85,056

Efficient chromosome-scale haplotype-resolved assembly of human genomes

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    • In bioinformatics: 468 out of 8,141
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Human Genome Assembly in 100 Minutes

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    • Site-wide: 3,648 out of 85,056

Long-read, whole genome shotgun sequence data for five model organisms

genomics more details view paper
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    • In genomics: 666 out of 5,477
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    • Site-wide: 75,985 out of 85,056

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

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    • In genomics: 839 out of 5,477
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    • Site-wide: 37,791 out of 85,056

De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research

genomics more details view paper
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    • In genomics: 863 out of 5,477
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    • Site-wide: 74,058 out of 85,056

Scaffolding of long read assemblies using long range contact information

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    • In genomics: 993 out of 5,477
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    • Site-wide: 76,612 out of 85,056

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

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    • In genomics: 1,099 out of 5,477
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  • Since beginning of last month:
    • Site-wide: 30,234 out of 85,056

Amplification-free long read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

genomics more details view paper
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    • In genomics: 1,286 out of 5,477
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    • Site-wide: 860 out of 85,056
  • Since beginning of last month:
    • Site-wide: 4,844 out of 85,056

Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

genomics more details view paper
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    • Site-wide: 16,817 out of 85,056
    • In genomics: 2,105 out of 5,477
  • Year to date:
    • Site-wide: 7,703 out of 85,056
  • Since beginning of last month:
    • Site-wide: 7,573 out of 85,056

A Diploid Assembly-based Benchmark for Variants in the Major Histocompatibility Complex

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    • In genomics: 2,515 out of 5,477
  • Year to date:
    • Site-wide: 7,556 out of 85,056
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    • Site-wide: 4,958 out of 85,056

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