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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 51,571 (rank: 2,300 out of 513,151)
  • Categories:
    • bioinformatics: 17,575 (rank: 289 out of 36,949)
    • cancer biology: 2,363 (rank: 1,655 (tie) out of 31,622)
    • genomics: 31,633 (rank: 253 out of 45,807)

Downloads per author, site-wide

Preprints

Detection of the Novel SARS-CoV-2 European Lineage B.1.177 in Ontario, Canada

infectious diseases more details view paper

No download data for this paper yet.

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 10,996 times
  • Download rankings, all-time:
    • Site-wide: 556 out of 119,003
    • In bioinformatics: 25 out of 9,624
  • Year to date:
    • Site-wide: 8,335 out of 119,003
  • Since beginning of last month:
    • Site-wide: 12,568 out of 119,003

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 8,772 times
  • Download rankings, all-time:
    • Site-wide: 758 out of 119,003
    • In genomics: 70 out of 6,455
  • Year to date:
    • Site-wide: 4,304 out of 119,003
  • Since beginning of last month:
    • Site-wide: 5,234 out of 119,003

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 7,113 times
  • Download rankings, all-time:
    • Site-wide: 1,006 out of 119,003
    • In genomics: 102 out of 6,455
  • Year to date:
    • Site-wide: 24,138 out of 119,003
  • Since beginning of last month:
    • Site-wide: 30,726 out of 119,003

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,583 times
  • Download rankings, all-time:
    • Site-wide: 1,810 out of 119,003
    • In genomics: 212 out of 6,455
  • Year to date:
    • Site-wide: 21,834 out of 119,003
  • Since beginning of last month:
    • Site-wide: 21,159 out of 119,003

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 3,624 times
  • Download rankings, all-time:
    • Site-wide: 2,529 out of 119,003
    • In genomics: 321 out of 6,455
  • Year to date:
    • Site-wide: 6,443 out of 119,003
  • Since beginning of last month:
    • Site-wide: 3,224 out of 119,003

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,563 times
  • Download rankings, all-time:
    • Site-wide: 4,205 out of 119,003
    • In bioinformatics: 497 out of 9,624
  • Year to date:
    • Site-wide: 84,864 out of 119,003
  • Since beginning of last month:
    • Site-wide: 86,948 out of 119,003

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,375 times
  • Download rankings, all-time:
    • Site-wide: 4,722 out of 119,003
    • In genomics: 594 out of 6,455
  • Year to date:
    • Site-wide: 107,599 out of 119,003
  • Since beginning of last month:
    • Site-wide: 114,925 out of 119,003

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,363 times
  • Download rankings, all-time:
    • Site-wide: 4,753 out of 119,003
    • In cancer biology: 74 out of 3,768
  • Year to date:
    • Site-wide: 28,604 out of 119,003
  • Since beginning of last month:
    • Site-wide: 82,765 out of 119,003

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,929 times
  • Download rankings, all-time:
    • Site-wide: 6,406 out of 119,003
    • In bioinformatics: 830 out of 9,624
  • Year to date:
    • Site-wide: 30,303 out of 119,003
  • Since beginning of last month:
    • Site-wide: 37,252 out of 119,003

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,893 times
  • Download rankings, all-time:
    • Site-wide: 6,586 out of 119,003
    • In genomics: 781 out of 6,455
  • Year to date:
    • Site-wide: 113,530 out of 119,003
  • Since beginning of last month:
    • Site-wide: 99,436 out of 119,003

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,821 times
  • Download rankings, all-time:
    • Site-wide: 6,977 out of 119,003
    • In genomics: 825 out of 6,455
  • Year to date:
    • Site-wide: 40,636 out of 119,003
  • Since beginning of last month:
    • Site-wide: 38,176 out of 119,003

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,452 times
  • Download rankings, all-time:
    • Site-wide: 9,802 out of 119,003
    • In genomics: 1,148 out of 6,455
  • Year to date:
    • Site-wide: 33,469 out of 119,003
  • Since beginning of last month:
    • Site-wide: 40,773 out of 119,003

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,085 times
  • Download rankings, all-time:
    • Site-wide: 15,173 out of 119,003
    • In bioinformatics: 1,934 out of 9,624
  • Year to date:
    • Site-wide: 78,087 out of 119,003
  • Since beginning of last month:
    • Site-wide: 95,274 out of 119,003

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 1,002 times
  • Download rankings, all-time:
    • Site-wide: 17,118 out of 119,003
    • In bioinformatics: 2,155 out of 9,624
  • Year to date:
    • Site-wide: 15,050 out of 119,003
  • Since beginning of last month:
    • Site-wide: 28,292 out of 119,003

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