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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 55,066 (rank: 2,958 (tie) )
  • Categories:
    • bioinformatics: 18,518 (rank: 350 )
    • cancer biology: 2,518 (rank: 2,360 (tie) )
    • genomics: 33,619 (rank: 353 )
    • infectious diseases: 411 (rank: 37,079 (tie) )

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 11,463 times
  • Download rankings, all-time:
    • Site-wide: 782
    • In bioinformatics: 32
  • Year to date:
    • Site-wide: 10,397
  • Since beginning of last month:
    • Site-wide: 19,116

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 9,250 times
  • Download rankings, all-time:
    • Site-wide: 1,026
    • In genomics: 74
  • Year to date:
    • Site-wide: 12,669
  • Since beginning of last month:
    • Site-wide: 8,453

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 7,595 times
  • Download rankings, all-time:
    • Site-wide: 1,326
    • In genomics: 110
  • Year to date:
    • Site-wide: 9,565
  • Since beginning of last month:
    • Site-wide: 7,833

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,828 times
  • Download rankings, all-time:
    • Site-wide: 2,441
    • In genomics: 242
  • Year to date:
    • Site-wide: 25,733
  • Since beginning of last month:
    • Site-wide: 29,963

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 4,016 times
  • Download rankings, all-time:
    • Site-wide: 3,180
    • In genomics: 335
  • Year to date:
    • Site-wide: 14,033
  • Since beginning of last month:
    • Site-wide: 17,941

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,656 times
  • Download rankings, all-time:
    • Site-wide: 5,690
    • In bioinformatics: 591
  • Year to date:
    • Site-wide: 67,539
  • Since beginning of last month:
    • Site-wide: 135,966

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,518 times
  • Download rankings, all-time:
    • Site-wide: 6,173
    • In cancer biology: 94
  • Year to date:
    • Site-wide: 43,112
  • Since beginning of last month:
    • Site-wide: 45,071

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,422 times
  • Download rankings, all-time:
    • Site-wide: 6,528
    • In genomics: 700
  • Year to date:
    • Site-wide: 122,661
  • Since beginning of last month:
    • Site-wide: 139,979

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 2,035 times
  • Download rankings, all-time:
    • Site-wide: 8,401
    • In bioinformatics: 953
  • Year to date:
    • Site-wide: 65,590
  • Since beginning of last month:
    • Site-wide: 58,009

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,945 times
  • Download rankings, all-time:
    • Site-wide: 9,003
    • In genomics: 928
  • Year to date:
    • Site-wide: 53,633
  • Since beginning of last month:
    • Site-wide: 57,796

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,938 times
  • Download rankings, all-time:
    • Site-wide: 9,050
    • In genomics: 934
  • Year to date:
    • Site-wide: 120,344
  • Since beginning of last month:
    • Site-wide: 146,974

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,625 times
  • Download rankings, all-time:
    • Site-wide: 11,755
    • In genomics: 1,216
  • Year to date:
    • Site-wide: 42,160
  • Since beginning of last month:
    • Site-wide: 97,899

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 18,841
    • In bioinformatics: 2,184
  • Year to date:
    • Site-wide: 41,450
  • Since beginning of last month:
    • Site-wide: 50,762

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,181 times
  • Download rankings, all-time:
    • Site-wide: 18,907
    • In bioinformatics: 2,189
  • Year to date:
    • Site-wide: 75,167
  • Since beginning of last month:
    • Site-wide: 36,995

Detection of the Novel SARS-CoV-2 European Lineage B.1.177 in Ontario, Canada

infectious diseases more details view paper
  • Downloaded 411 times
  • Download rankings, all-time:
    • Site-wide: 74,168
    • In infectious diseases: 3,609
  • Year to date:
    • Site-wide: 28,656
  • Since beginning of last month:
    • Site-wide: 49,010

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