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Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 56,666 (rank: 3,455 )
  • Categories:
    • bioinformatics: 19,015 (rank: 392 )
    • cancer biology: 2,565 (rank: 2,800 (tie) )
    • genomics: 34,555 (rank: 365 )
    • infectious diseases: 531 (rank: 40,321 (tie) )

Downloads per author, site-wide

Preprints

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 11,718 times
  • Download rankings, all-time:
    • Site-wide: 887
    • In bioinformatics: 37
  • Year to date:
    • Site-wide: 9,951
  • Since beginning of last month:
    • Site-wide: 13,138

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 9,421 times
  • Download rankings, all-time:
    • Site-wide: 1,163
    • In genomics: 79
  • Year to date:
    • Site-wide: 14,277
  • Since beginning of last month:
    • Site-wide: 29,392

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 7,929 times
  • Download rankings, all-time:
    • Site-wide: 1,450
    • In genomics: 110
  • Year to date:
    • Site-wide: 7,936
  • Since beginning of last month:
    • Site-wide: 6,110

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,907 times
  • Download rankings, all-time:
    • Site-wide: 2,754
    • In genomics: 258
  • Year to date:
    • Site-wide: 34,786
  • Since beginning of last month:
    • Site-wide: 131,989

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 4,150 times
  • Download rankings, all-time:
    • Site-wide: 3,457
    • In genomics: 338
  • Year to date:
    • Site-wide: 17,229
  • Since beginning of last month:
    • Site-wide: 29,597

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,680 times
  • Download rankings, all-time:
    • Site-wide: 6,470
    • In bioinformatics: 655
  • Year to date:
    • Site-wide: 104,880
  • Since beginning of last month:
    • Site-wide: 154,058

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 2,565 times
  • Download rankings, all-time:
    • Site-wide: 6,911
    • In cancer biology: 101
  • Year to date:
    • Site-wide: 62,797
  • Since beginning of last month:
    • Site-wide: 139,484

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,445 times
  • Download rankings, all-time:
    • Site-wide: 7,421
    • In genomics: 756
  • Year to date:
    • Site-wide: 149,858
  • Since beginning of last month:
    • Site-wide: 154,315

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 2,118 times
  • Download rankings, all-time:
    • Site-wide: 9,147
    • In bioinformatics: 1,007
  • Year to date:
    • Site-wide: 68,454
  • Since beginning of last month:
    • Site-wide: 82,550

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 2,057 times
  • Download rankings, all-time:
    • Site-wide: 9,545
    • In genomics: 945
  • Year to date:
    • Site-wide: 50,287
  • Since beginning of last month:
    • Site-wide: 26,518

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,960 times
  • Download rankings, all-time:
    • Site-wide: 10,276
    • In genomics: 1,014
  • Year to date:
    • Site-wide: 149,308
  • Since beginning of last month:
    • Site-wide: 157,483

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,686 times
  • Download rankings, all-time:
    • Site-wide: 12,883
    • In genomics: 1,283
  • Year to date:
    • Site-wide: 56,829
  • Since beginning of last month:
    • Site-wide: 124,923

GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis

bioinformatics more details view paper
  • Downloaded 1,254 times
  • Download rankings, all-time:
    • Site-wide: 20,264
    • In bioinformatics: 2,288
  • Year to date:
    • Site-wide: 52,711
  • Since beginning of last month:
    • Site-wide: 134,622

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,245 times
  • Download rankings, all-time:
    • Site-wide: 20,487
    • In bioinformatics: 2,310
  • Year to date:
    • Site-wide: 85,205
  • Since beginning of last month:
    • Site-wide: 87,064

Detection of the Novel SARS-CoV-2 European Lineage B.1.177 in Ontario, Canada

infectious diseases more details view paper
  • Downloaded 531 times
  • Download rankings, all-time:
    • Site-wide: 68,248
    • In infectious diseases: 3,837
  • Year to date:
    • Site-wide: 31,308
  • Since beginning of last month:
    • Site-wide: 40,559

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