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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,822 bioRxiv papers from 266,142 authors.

Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 54,993 (rank: 209 out of 266,142)
  • Categories:
    • bioinformatics: 14,632 (rank: 123 out of 23,193)
    • cancer biology: 1,961 (rank: 868 (tie) out of 15,438)
    • genomics: 38,400 (rank: 130 out of 30,376)

Downloads per author, site-wide

Preprints

Nanopore sequencing and assembly of a human genome with ultra-long reads

genomics more details view paper
  • Downloaded 12,838 times
  • Download rankings, all-time:
    • Site-wide: 62 out of 57,822
    • In genomics: 17 out of 4,058
  • Year to date:
    • Site-wide: 3,736 out of 57,822
  • Since beginning of last month:
    • Site-wide: 6,710 out of 57,822

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 9,828 times
  • Download rankings, all-time:
    • Site-wide: 103 out of 57,822
    • In bioinformatics: 19 out of 5,897
  • Year to date:
    • Site-wide: 2,489 out of 57,822
  • Since beginning of last month:
    • Site-wide: 2,877 out of 57,822

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,594 times
  • Download rankings, all-time:
    • Site-wide: 217 out of 57,822
    • In genomics: 62 out of 4,058
  • Year to date:
    • Site-wide: 9,435 out of 57,822
  • Since beginning of last month:
    • Site-wide: 8,325 out of 57,822

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 6,017 times
  • Download rankings, all-time:
    • Site-wide: 262 out of 57,822
    • In genomics: 77 out of 4,058
  • Year to date:
    • Site-wide: 158 out of 57,822
  • Since beginning of last month:
    • Site-wide: 341 out of 57,822

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 4,119 times
  • Download rankings, all-time:
    • Site-wide: 544 out of 57,822
    • In genomics: 144 out of 4,058
  • Year to date:
    • Site-wide: 5,756 out of 57,822
  • Since beginning of last month:
    • Site-wide: 3,488 out of 57,822

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,437 times
  • Download rankings, all-time:
    • Site-wide: 1,457 out of 57,822
    • In bioinformatics: 291 out of 5,897
  • Year to date:
    • Site-wide: 40,648 out of 57,822
  • Since beginning of last month:
    • Site-wide: 17,415 out of 57,822

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,260 times
  • Download rankings, all-time:
    • Site-wide: 1,671 out of 57,822
    • In genomics: 376 out of 4,058
  • Year to date:
    • Site-wide: 46,690 out of 57,822
  • Since beginning of last month:
    • Site-wide: 46,202 out of 57,822

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 2,146 times
  • Download rankings, all-time:
    • Site-wide: 1,818 out of 57,822
    • In genomics: 403 out of 4,058
  • Year to date:
    • Site-wide: 394 out of 57,822
  • Since beginning of last month:
    • Site-wide: 1,948 out of 57,822

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 1,961 times
  • Download rankings, all-time:
    • Site-wide: 2,133 out of 57,822
    • In cancer biology: 50 out of 1,870
  • Year to date:
    • Site-wide: 5,912 out of 57,822
  • Since beginning of last month:
    • Site-wide: 12,241 out of 57,822

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,816 times
  • Download rankings, all-time:
    • Site-wide: 2,414 out of 57,822
    • In genomics: 499 out of 4,058
  • Year to date:
    • Site-wide: 53,712 out of 57,822
  • Since beginning of last month:
    • Site-wide: 50,560 out of 57,822

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 3,360 out of 57,822
    • In genomics: 644 out of 4,058
  • Year to date:
    • Site-wide: 2,819 out of 57,822
  • Since beginning of last month:
    • Site-wide: 9,164 out of 57,822

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,429 times
  • Download rankings, all-time:
    • Site-wide: 3,639 out of 57,822
    • In bioinformatics: 729 out of 5,897
  • Year to date:
    • Site-wide: 5,920 out of 57,822
  • Since beginning of last month:
    • Site-wide: 5,640 out of 57,822

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,119 times
  • Download rankings, all-time:
    • Site-wide: 5,405 out of 57,822
    • In genomics: 924 out of 4,058
  • Year to date:
    • Site-wide: 30,507 out of 57,822
  • Since beginning of last month:
    • Site-wide: 30,782 out of 57,822

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 938 times
  • Download rankings, all-time:
    • Site-wide: 7,236 out of 57,822
    • In bioinformatics: 1,309 out of 5,897
  • Year to date:
    • Site-wide: 28,844 out of 57,822
  • Since beginning of last month:
    • Site-wide: 39,298 out of 57,822

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