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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,258 bioRxiv papers from 242,323 authors.

Author: Jared T Simpson

  • Most recently observed institution: Ontario Institute for Cancer Research

Rankings

  • All-time downloads: 53,209 (rank: 200 out of 242,323)
  • Categories:
    • bioinformatics: 14,281 (rank: 107 out of 21,394)
    • cancer biology: 1,892 (rank: 737 (tie) out of 13,509)
    • genomics: 37,036 (rank: 128 out of 28,035)

Downloads per author, site-wide

Preprints

Nanopore sequencing and assembly of a human genome with ultra-long reads

genomics more details view paper
  • Downloaded 12,740 times
  • Download rankings, all-time:
    • Site-wide: 55 out of 52,258
    • In genomics: 17 out of 3,742
  • Year to date:
    • Site-wide: 3,225 out of 52,258
  • Since beginning of last month:
    • Site-wide: 4,117 out of 52,258

A complete bacterial genome assembled de novo using only nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 9,646 times
  • Download rankings, all-time:
    • Site-wide: 97 out of 52,258
    • In bioinformatics: 19 out of 5,476
  • Year to date:
    • Site-wide: 2,689 out of 52,258
  • Since beginning of last month:
    • Site-wide: 2,818 out of 52,258

Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer

genomics more details view paper
  • Downloaded 6,519 times
  • Download rankings, all-time:
    • Site-wide: 196 out of 52,258
    • In genomics: 59 out of 3,742
  • Year to date:
    • Site-wide: 9,063 out of 52,258
  • Since beginning of last month:
    • Site-wide: 11,670 out of 52,258

Nanopore native RNA sequencing of a human poly(A) transcriptome

genomics more details view paper
  • Downloaded 5,368 times
  • Download rankings, all-time:
    • Site-wide: 291 out of 52,258
    • In genomics: 79 out of 3,742
  • Year to date:
    • Site-wide: 150 out of 52,258
  • Since beginning of last month:
    • Site-wide: 280 out of 52,258

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

genomics more details view paper
  • Downloaded 3,982 times
  • Download rankings, all-time:
    • Site-wide: 517 out of 52,258
    • In genomics: 139 out of 3,742
  • Year to date:
    • Site-wide: 7,102 out of 52,258
  • Since beginning of last month:
    • Site-wide: 5,646 out of 52,258

Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data

bioinformatics more details view paper
  • Downloaded 2,397 times
  • Download rankings, all-time:
    • Site-wide: 1,339 out of 52,258
    • In bioinformatics: 273 out of 5,476
  • Year to date:
    • Site-wide: 42,835 out of 52,258
  • Since beginning of last month:
    • Site-wide: 41,669 out of 52,258

A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes

genomics more details view paper
  • Downloaded 2,239 times
  • Download rankings, all-time:
    • Site-wide: 1,510 out of 52,258
    • In genomics: 355 out of 3,742
  • Year to date:
    • Site-wide: 40,861 out of 52,258
  • Since beginning of last month:
    • Site-wide: 31,035 out of 52,258

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 1,905 times
  • Download rankings, all-time:
    • Site-wide: 2,002 out of 52,258
    • In genomics: 439 out of 3,742
  • Year to date:
    • Site-wide: 300 out of 52,258
  • Since beginning of last month:
    • Site-wide: 1,387 out of 52,258

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

cancer biology more details view paper
  • Downloaded 1,892 times
  • Download rankings, all-time:
    • Site-wide: 2,026 out of 52,258
    • In cancer biology: 45 out of 1,668
  • Year to date:
    • Site-wide: 4,939 out of 52,258
  • Since beginning of last month:
    • Site-wide: 7,040 out of 52,258

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,794 times
  • Download rankings, all-time:
    • Site-wide: 2,209 out of 52,258
    • In genomics: 474 out of 3,742
  • Year to date:
    • Site-wide: 49,666 out of 52,258
  • Since beginning of last month:
    • Site-wide: 47,984 out of 52,258

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

genomics more details view paper
  • Downloaded 1,406 times
  • Download rankings, all-time:
    • Site-wide: 3,303 out of 52,258
    • In genomics: 643 out of 3,742
  • Year to date:
    • Site-wide: 2,224 out of 52,258
  • Since beginning of last month:
    • Site-wide: 3,227 out of 52,258

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,326 times
  • Download rankings, all-time:
    • Site-wide: 3,641 out of 52,258
    • In bioinformatics: 738 out of 5,476
  • Year to date:
    • Site-wide: 5,986 out of 52,258
  • Since beginning of last month:
    • Site-wide: 4,620 out of 52,258

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 5,028 out of 52,258
    • In genomics: 874 out of 3,742
  • Year to date:
    • Site-wide: 28,484 out of 52,258
  • Since beginning of last month:
    • Site-wide: 26,384 out of 52,258

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 912 times
  • Download rankings, all-time:
    • Site-wide: 6,608 out of 52,258
    • In bioinformatics: 1,222 out of 5,476
  • Year to date:
    • Site-wide: 23,945 out of 52,258
  • Since beginning of last month:
    • Site-wide: 47,161 out of 52,258

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