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Author: Pavitra Roychoudhury

Rankings

  • All-time downloads: 71,482 (rank: 2,208 )
  • Categories:
    • bioinformatics: 481 (rank: 28,210 (tie) )
    • epidemiology: 10,691 (rank: 1,481 (tie) )
    • genomics: 1,179 (rank: 20,897 (tie) )
    • immunology: 787 (rank: 14,663 (tie) )
    • infectious diseases: 46,545 (rank: 1,134 )
    • microbiology: 3,686 (rank: 4,315 )
    • public and global health: 8,113 (rank: 651 (tie) )

Downloads per author, site-wide

Preprints

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

infectious diseases more details view paper
  • Downloaded 26,493 times
  • Download rankings, all-time:
    • Site-wide: 288
    • In infectious diseases: 107
  • Year to date:
    • Site-wide: 1,490
  • Since beginning of last month:
    • Site-wide: 12,422

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,523 times
  • Download rankings, all-time:
    • Site-wide: 1,011
    • In epidemiology: 134
  • Year to date:
    • Site-wide: 8,423
  • Since beginning of last month:
    • Site-wide: 60,418

Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology

public and global health more details view paper
  • Downloaded 8,113 times
  • Download rankings, all-time:
    • Site-wide: 1,243
    • In public and global health: 51
  • Year to date:
    • Site-wide: 6,306
  • Since beginning of last month:
    • Site-wide: 12,287

Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State

infectious diseases more details view paper
  • Downloaded 7,135 times
  • Download rankings, all-time:
    • Site-wide: 1,457
    • In infectious diseases: 402
  • Year to date:
    • Site-wide: 282
  • Since beginning of last month:
    • Site-wide: 49,054

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

infectious diseases more details view paper
  • Downloaded 6,829 times
  • Download rankings, all-time:
    • Site-wide: 1,535
    • In infectious diseases: 417
  • Year to date:
    • Site-wide: 7,083
  • Since beginning of last month:
    • Site-wide: 83,351

A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance

infectious diseases more details view paper
  • Downloaded 2,284 times
  • Download rankings, all-time:
    • Site-wide: 7,237
    • In infectious diseases: 1,127
  • Year to date:
    • Site-wide: 1,068
  • Since beginning of last month:
    • Site-wide: 732

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

microbiology more details view paper
  • Downloaded 1,988 times
  • Download rankings, all-time:
    • Site-wide: 8,871
    • In microbiology: 526
  • Year to date:
    • Site-wide: 15,197
  • Since beginning of last month:
    • Site-wide: 63,231

Anti-SARS-CoV-2 antibody levels are concordant across multiple platforms but are not fully predictive of sterilizing immunity

infectious diseases more details view paper
  • Downloaded 1,802 times
  • Download rankings, all-time:
    • Site-wide: 10,259
    • In infectious diseases: 1,391
  • Year to date:
    • Site-wide: 1,456
  • Since beginning of last month:
    • Site-wide: 2,129

SARS-CoV-2 ORF6 disrupts nucleocytoplasmic transport through interactions with Rae1 and Nup98

microbiology more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 19,177
    • In microbiology: 1,106
  • Year to date:
    • Site-wide: 10,323
  • Since beginning of last month:
    • Site-wide: 8,124

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

epidemiology more details view paper
  • Downloaded 925 times
  • Download rankings, all-time:
    • Site-wide: 27,493
    • In epidemiology: 1,529
  • Year to date:
    • Site-wide: 20,088
  • Since beginning of last month:
    • Site-wide: 50,975

Elimination of HSV-2 infected cells is mediated predominantly by paracrine effects of tissue-resident T cell derived cytokines

immunology more details view paper
  • Downloaded 787 times
  • Download rankings, all-time:
    • Site-wide: 34,491
    • In immunology: 1,080
  • Year to date:
    • Site-wide: 37,155
  • Since beginning of last month:
    • Site-wide: 55,241

Outcomes associated with SARS-CoV-2 viral clades in COVID-19

infectious diseases more details view paper
  • Downloaded 781 times
  • Download rankings, all-time:
    • Site-wide: 34,833
    • In infectious diseases: 2,547
  • Year to date:
    • Site-wide: 24,492
  • Since beginning of last month:
    • Site-wide: 22,677

Identification of multiple large deletions in ORF7a resulting in in-frame gene fusions in clinical SARS-CoV-2 isolates

infectious diseases more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 52,513
    • In infectious diseases: 3,108
  • Year to date:
    • Site-wide: 68,390
  • Since beginning of last month:
    • Site-wide: 80,872

Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain

microbiology more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 59,424
    • In microbiology: 3,820
  • Year to date:
    • Site-wide: 137,961
  • Since beginning of last month:
    • Site-wide: 58,750

Viral diversity is an obligate consideration in CRISPR/Cas9 designs for HIV cure

bioinformatics more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 64,068
    • In bioinformatics: 6,250
  • Year to date:
    • Site-wide: 150,737
  • Since beginning of last month:
    • Site-wide: None

The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition

genomics more details view paper
  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 66,053
    • In genomics: 4,690
  • Year to date:
    • Site-wide: 105,373
  • Since beginning of last month:
    • Site-wide: 56,221

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

genomics more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 79,780
    • In genomics: 5,267
  • Year to date:
    • Site-wide: 126,577
  • Since beginning of last month:
    • Site-wide: None

Specific allelic discrimination of N501Y and other SARS-CoV-2 mutations by ddPCR detects B.1.1.7 lineage in Washington State

infectious diseases more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 83,972
    • In infectious diseases: 3,905
  • Year to date:
    • Site-wide: 13,649
  • Since beginning of last month:
    • Site-wide: 80,902

Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

genomics more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 92,971
    • In genomics: 5,791
  • Year to date:
    • Site-wide: 136,046
  • Since beginning of last month:
    • Site-wide: None

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

epidemiology more details view paper
  • Downloaded 243 times
  • Download rankings, all-time:
    • Site-wide: 111,956
    • In epidemiology: 4,670
  • Year to date:
    • Site-wide: 24,109
  • Since beginning of last month:
    • Site-wide: 15,020

Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19

infectious diseases more details view paper
  • Downloaded 198 times
  • Download rankings, all-time:
    • Site-wide: 123,164
    • In infectious diseases: 4,959
  • Year to date:
    • Site-wide: 31,325
  • Since beginning of last month:
    • Site-wide: 98,039

Trajectory of viral load in a prospective population-based cohort with incident SARS-CoV-2 G614 infection

infectious diseases more details view paper
  • Downloaded 86 times
  • Download rankings, all-time:
    • Site-wide: 146,637
    • In infectious diseases: 5,729
  • Year to date:
    • Site-wide: 74,185
  • Since beginning of last month:
    • Site-wide: 1,391

Genome sequencing of 196 Treponema pallidum strains from six continents reveals additional variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

genomics more details view paper
  • Downloaded 1 times
  • Download rankings, all-time:
    • Site-wide: 154,875
    • In genomics: 7,692
  • Year to date:
    • Site-wide: 154,799
  • Since beginning of last month:
    • Site-wide: 67,490

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