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Author: Charles Y Chiu

Rankings

  • All-time downloads: 79,568 (rank: 2,202 )
  • Categories:
    • epidemiology: 2,110 (rank: 6,649 (tie) )
    • genetic and genomic medicine: 1,741 (rank: 2,286 (tie) )
    • genomics: 14,601 (rank: 1,245 (tie) )
    • infectious diseases: 55,630 (rank: 1,105 )
    • microbiology: 5,265 (rank: 3,277 )
    • neurology: 221 (rank: 6,098 (tie) )

Downloads per author, site-wide

Preprints

Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay

infectious diseases more details view paper
  • Downloaded 24,055 times
  • Download rankings, all-time:
    • Site-wide: 361
    • In infectious diseases: 134
  • Year to date:
    • Site-wide: 2,405
  • Since beginning of last month:
    • Site-wide: 4,613

Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation

infectious diseases more details view paper
  • Downloaded 7,661 times
  • Download rankings, all-time:
    • Site-wide: 1,455
    • In infectious diseases: 420
  • Year to date:
    • Site-wide: 356
  • Since beginning of last month:
    • Site-wide: 771

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

infectious diseases more details view paper
  • Downloaded 6,924 times
  • Download rankings, all-time:
    • Site-wide: 1,634
    • In infectious diseases: 457
  • Year to date:
    • Site-wide: 7,864
  • Since beginning of last month:
    • Site-wide: 21,624

Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California

infectious diseases more details view paper
  • Downloaded 5,780 times
  • Download rankings, all-time:
    • Site-wide: 2,100
    • In infectious diseases: 550
  • Year to date:
    • Site-wide: 473
  • Since beginning of last month:
    • Site-wide: 104

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

genomics more details view paper
  • Downloaded 5,539 times
  • Download rankings, all-time:
    • Site-wide: 2,226
    • In genomics: 191
  • Year to date:
    • Site-wide: 37,629
  • Since beginning of last month:
    • Site-wide: 36,635

Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

microbiology more details view paper
  • Downloaded 3,721 times
  • Download rankings, all-time:
    • Site-wide: 3,849
    • In microbiology: 265
  • Year to date:
    • Site-wide: 53,111
  • Since beginning of last month:
    • Site-wide: 61,541

SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood from the San Francisco Bay Area

infectious diseases more details view paper
  • Downloaded 3,680 times
  • Download rankings, all-time:
    • Site-wide: 3,920
    • In infectious diseases: 807
  • Year to date:
    • Site-wide: 6,852
  • Since beginning of last month:
    • Site-wide: 28,801

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

genomics more details view paper
  • Downloaded 3,275 times
  • Download rankings, all-time:
    • Site-wide: 4,606
    • In genomics: 463
  • Year to date:
    • Site-wide: 89,810
  • Since beginning of last month:
    • Site-wide: 127,167

Nanopore detection of bacterial DNA base modifications

genomics more details view paper
  • Downloaded 3,170 times
  • Download rankings, all-time:
    • Site-wide: 4,811
    • In genomics: 488
  • Year to date:
    • Site-wide: 62,324
  • Since beginning of last month:
    • Site-wide: 49,493

SARS-CoV-2 Community Transmission During Shelter-in-Place in San Francisco

infectious diseases more details view paper
  • Downloaded 2,374 times
  • Download rankings, all-time:
    • Site-wide: 7,328
    • In infectious diseases: 1,188
  • Year to date:
    • Site-wide: 27,096
  • Since beginning of last month:
    • Site-wide: 38,975

Cell-Free DNA in Blood Reveals Significant Cell, Tissue and Organ Specific injury and Predicts COVID-19 Severity

genetic and genomic medicine more details view paper
  • Downloaded 1,741 times
  • Download rankings, all-time:
    • Site-wide: 11,581
    • In genetic and genomic medicine: 51
  • Year to date:
    • Site-wide: 12,091
  • Since beginning of last month:
    • Site-wide: 33,126

A SARS-CoV-2 serological assay to determine the presence of blocking antibodies that compete for human ACE2 binding

infectious diseases more details view paper
  • Downloaded 1,640 times
  • Download rankings, all-time:
    • Site-wide: 12,612
    • In infectious diseases: 1,598
  • Year to date:
    • Site-wide: 16,909
  • Since beginning of last month:
    • Site-wide: 15,290

ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens

infectious diseases more details view paper
  • Downloaded 1,289 times
  • Download rankings, all-time:
    • Site-wide: 18,123
    • In infectious diseases: 1,918
  • Year to date:
    • Site-wide: 52,437
  • Since beginning of last month:
    • Site-wide: 78,771

Laboratory Validation of a Clinical Metagenomic Sequencing Assay for Pathogen Detection in Cerebrospinal Fluid

genomics more details view paper
  • Downloaded 1,268 times
  • Download rankings, all-time:
    • Site-wide: 18,583
    • In genomics: 1,765
  • Year to date:
    • Site-wide: 61,644
  • Since beginning of last month:
    • Site-wide: 91,143

Discovery of a persistent Zika virus lineage in Bahia, Brazil

epidemiology more details view paper
  • Downloaded 1,220 times
  • Download rankings, all-time:
    • Site-wide: 19,686
    • In epidemiology: 1,257
  • Year to date:
    • Site-wide: 117,376
  • Since beginning of last month:
    • Site-wide: 136,712

SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay

infectious diseases more details view paper
  • Downloaded 927 times
  • Download rankings, all-time:
    • Site-wide: 29,547
    • In infectious diseases: 2,455
  • Year to date:
    • Site-wide: 4,863
  • Since beginning of last month:
    • Site-wide: 5,511

Association of COVID-19 Infections in San Francisco in Early March 2020 with Travel to New York and Europe

epidemiology more details view paper
  • Downloaded 890 times
  • Download rankings, all-time:
    • Site-wide: 31,272
    • In epidemiology: 1,695
  • Year to date:
    • Site-wide: 76,465
  • Since beginning of last month:
    • Site-wide: 89,088

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the critical need for reference strain sequencing

genomics more details view paper
  • Downloaded 876 times
  • Download rankings, all-time:
    • Site-wide: 32,014
    • In genomics: 2,753
  • Year to date:
    • Site-wide: 95,197
  • Since beginning of last month:
    • Site-wide: 85,701

Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification

infectious diseases more details view paper
  • Downloaded 780 times
  • Download rankings, all-time:
    • Site-wide: 37,710
    • In infectious diseases: 2,791
  • Year to date:
    • Site-wide: 32,700
  • Since beginning of last month:
    • Site-wide: 63,751

A Metagenomic Comparison of Tracheal Aspirate and Mini-Bronchial Alveolar Lavage for Assessment of Respiratory Microbiota

microbiology more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 50,178
    • In microbiology: 3,089
  • Year to date:
    • Site-wide: 99,854
  • Since beginning of last month:
    • Site-wide: 121,115

Universal PCR and antibody testing demonstrate little to no transmission of SARS-CoV-2 in a rural community

infectious diseases more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 63,629
    • In infectious diseases: 3,605
  • Year to date:
    • Site-wide: 63,335
  • Since beginning of last month:
    • Site-wide: 89,771

Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

genomics more details view paper
  • Downloaded 473 times
  • Download rankings, all-time:
    • Site-wide: 70,814
    • In genomics: 4,886
  • Year to date:
    • Site-wide: 131,872
  • Since beginning of last month:
    • Site-wide: 109,335

Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities

microbiology more details view paper
  • Downloaded 393 times
  • Download rankings, all-time:
    • Site-wide: 85,328
    • In microbiology: 5,781
  • Year to date:
    • Site-wide: 155,403
  • Since beginning of last month:
    • Site-wide: 155,218

Human, Nonhuman Primate, and Bat Cells Are Broadly Susceptible to Tibrovirus Particle Cell Entry

microbiology more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 93,282
    • In microbiology: 6,437
  • Year to date:
    • Site-wide: 111,156
  • Since beginning of last month:
    • Site-wide: 85,497

Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid

neurology more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 126,823
    • In neurology: 539
  • Year to date:
    • Site-wide: 38,402
  • Since beginning of last month:
    • Site-wide: 36,043

Two sides of a coin: a Zika virus mutation selected in pregnant rhesus macaques promotes fetal infection in mice but at a cost of reduced fitness in nonpregnant macaques and diminished transmissibility by vectors

microbiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 140,891
    • In microbiology: 10,530
  • Year to date:
    • Site-wide: 131,685
  • Since beginning of last month:
    • Site-wide: 143,009

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