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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,710 bioRxiv papers from 320,843 authors.

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 51,372 (rank: 336 out of 320,833)
  • Categories:
    • bioinformatics: 24,364 (rank: 82 out of 27,792)
    • developmental biology: 712 (rank: 2,781 (tie) out of 12,371)
    • genomics: 26,296 (rank: 242 out of 35,770)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 20,158 times
  • Download rankings, all-time:
    • Site-wide: 38 out of 73,741
    • In bioinformatics: 4 out of 7,172
  • Year to date:
    • Site-wide: 431 out of 73,741
  • Since beginning of last month:
    • Site-wide: 431 out of 73,741

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 10,047 times
  • Download rankings, all-time:
    • Site-wide: 143 out of 73,741
    • In genomics: 38 out of 4,889
  • Year to date:
    • Site-wide: 4,899 out of 73,741
  • Since beginning of last month:
    • Site-wide: 4,899 out of 73,741

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
  • Downloaded 6,008 times
  • Download rankings, all-time:
    • Site-wide: 368 out of 73,741
    • In genomics: 90 out of 4,889
  • Year to date:
    • Site-wide: 1,326 out of 73,741
  • Since beginning of last month:
    • Site-wide: 1,326 out of 73,741

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,239 times
  • Download rankings, all-time:
    • Site-wide: 2,248 out of 73,741
    • In bioinformatics: 450 out of 7,172
  • Year to date:
    • Site-wide: 35,190 out of 73,741
  • Since beginning of last month:
    • Site-wide: 35,190 out of 73,741

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,643 times
  • Download rankings, all-time:
    • Site-wide: 3,815 out of 73,741
    • In genomics: 695 out of 4,889
  • Year to date:
    • Site-wide: 33,189 out of 73,741
  • Since beginning of last month:
    • Site-wide: 33,189 out of 73,741

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,547 times
  • Download rankings, all-time:
    • Site-wide: 4,247 out of 73,741
    • In genomics: 759 out of 4,889
  • Year to date:
    • Site-wide: 27,290 out of 73,741
  • Since beginning of last month:
    • Site-wide: 27,290 out of 73,741

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,507 times
  • Download rankings, all-time:
    • Site-wide: 4,427 out of 73,741
    • In genomics: 794 out of 4,889
  • Year to date:
    • Site-wide: 41,365 out of 73,741
  • Since beginning of last month:
    • Site-wide: 41,365 out of 73,741

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,477 times
  • Download rankings, all-time:
    • Site-wide: 4,580 out of 73,741
    • In genomics: 816 out of 4,889
  • Year to date:
    • Site-wide: 24,240 out of 73,741
  • Since beginning of last month:
    • Site-wide: 24,240 out of 73,741

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 6,155 out of 73,741
    • In bioinformatics: 1,156 out of 7,172
  • Year to date:
    • Site-wide: 24,007 out of 73,741
  • Since beginning of last month:
    • Site-wide: 24,007 out of 73,741

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 6,881 out of 73,741
    • In genomics: 1,103 out of 4,889
  • Year to date:
    • Site-wide: 23,668 out of 73,741
  • Since beginning of last month:
    • Site-wide: 23,668 out of 73,741

Probabilistic gene expression signatures identify cell-types from single cell RNA-seq data

genomics more details view paper
  • Downloaded 1,096 times
  • Download rankings, all-time:
    • Site-wide: 7,515 out of 73,741
    • In genomics: 1,189 out of 4,889
  • Year to date:
    • Site-wide: 108 out of 73,741
  • Since beginning of last month:
    • Site-wide: 108 out of 73,741

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 807 times
  • Download rankings, all-time:
    • Site-wide: 12,297 out of 73,741
    • In genomics: 1,711 out of 4,889
  • Year to date:
    • Site-wide: 67,401 out of 73,741
  • Since beginning of last month:
    • Site-wide: 67,401 out of 73,741

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 730 times
  • Download rankings, all-time:
    • Site-wide: 14,253 out of 73,741
    • In bioinformatics: 2,274 out of 7,172
  • Year to date:
    • Site-wide: 69,253 out of 73,741
  • Since beginning of last month:
    • Site-wide: 69,253 out of 73,741

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 14,796 out of 73,741
    • In developmental biology: 340 out of 2,212
  • Year to date:
    • Site-wide: 9,862 out of 73,741
  • Since beginning of last month:
    • Site-wide: 9,862 out of 73,741

Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

genomics more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 22,967 out of 73,741
    • In genomics: 2,546 out of 4,889
  • Year to date:
    • Site-wide: 4,460 out of 73,741
  • Since beginning of last month:
    • Site-wide: 4,460 out of 73,741

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 486 times
  • Download rankings, all-time:
    • Site-wide: 24,990 out of 73,741
    • In genomics: 2,677 out of 4,889
  • Year to date:
    • Site-wide: 64,799 out of 73,741
  • Since beginning of last month:
    • Site-wide: 64,799 out of 73,741

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