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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,222 bioRxiv papers from 267,720 authors.

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 59,541 (rank: 196 out of 267,720)
  • Categories:
    • bioinformatics: 22,304 (rank: 71 out of 23,843)
    • developmental biology: 578 (rank: 2,676 (tie) out of 10,008)
    • epidemiology: 1,435 (rank: 621 (tie) out of 9,541)
    • genomics: 35,224 (rank: 143 out of 31,247)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,283 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 60,222
    • In bioinformatics: 3 out of 6,078
  • Year to date:
    • Site-wide: 267 out of 60,222
  • Since beginning of last month:
    • Site-wide: 415 out of 60,222

When to use Quantile Normalization?

genomics more details view paper
  • Downloaded 12,816 times
  • Download rankings, all-time:
    • Site-wide: 65 out of 60,222
    • In genomics: 19 out of 4,168
  • Year to date:
    • Site-wide: 203 out of 60,222
  • Since beginning of last month:
    • Site-wide: 321 out of 60,222

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 9,629 times
  • Download rankings, all-time:
    • Site-wide: 112 out of 60,222
    • In genomics: 36 out of 4,168
  • Year to date:
    • Site-wide: 1,662 out of 60,222
  • Since beginning of last month:
    • Site-wide: 4,185 out of 60,222

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
  • Downloaded 4,688 times
  • Download rankings, all-time:
    • Site-wide: 437 out of 60,222
    • In genomics: 117 out of 4,168
  • Year to date:
    • Site-wide: 65 out of 60,222
  • Since beginning of last month:
    • Site-wide: 257 out of 60,222

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,169 times
  • Download rankings, all-time:
    • Site-wide: 1,848 out of 60,222
    • In bioinformatics: 381 out of 6,078
  • Year to date:
    • Site-wide: 35,284 out of 60,222
  • Since beginning of last month:
    • Site-wide: 42,174 out of 60,222

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,523 times
  • Download rankings, all-time:
    • Site-wide: 3,405 out of 60,222
    • In genomics: 653 out of 4,168
  • Year to date:
    • Site-wide: 11,671 out of 60,222
  • Since beginning of last month:
    • Site-wide: 9,338 out of 60,222

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,484 times
  • Download rankings, all-time:
    • Site-wide: 3,570 out of 60,222
    • In genomics: 669 out of 4,168
  • Year to date:
    • Site-wide: 34,639 out of 60,222
  • Since beginning of last month:
    • Site-wide: 37,775 out of 60,222

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 3,732 out of 60,222
    • In genomics: 697 out of 4,168
  • Year to date:
    • Site-wide: 25,120 out of 60,222
  • Since beginning of last month:
    • Site-wide: 22,950 out of 60,222

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 1,435 times
  • Download rankings, all-time:
    • Site-wide: 3,775 out of 60,222
    • In epidemiology: 37 out of 1,556
  • Year to date:
    • Site-wide: 2,195 out of 60,222
  • Since beginning of last month:
    • Site-wide: 7,960 out of 60,222

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,368 times
  • Download rankings, all-time:
    • Site-wide: 4,087 out of 60,222
    • In genomics: 753 out of 4,168
  • Year to date:
    • Site-wide: 14,766 out of 60,222
  • Since beginning of last month:
    • Site-wide: 21,074 out of 60,222

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 5,410 out of 60,222
    • In bioinformatics: 1,040 out of 6,078
  • Year to date:
    • Site-wide: 32,636 out of 60,222
  • Since beginning of last month:
    • Site-wide: 28,652 out of 60,222

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 1,059 times
  • Download rankings, all-time:
    • Site-wide: 6,218 out of 60,222
    • In genomics: 1,034 out of 4,168
  • Year to date:
    • Site-wide: 10,317 out of 60,222
  • Since beginning of last month:
    • Site-wide: 27,070 out of 60,222

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 10,370 out of 60,222
    • In genomics: 1,497 out of 4,168
  • Year to date:
    • Site-wide: 50,491 out of 60,222
  • Since beginning of last month:
    • Site-wide: 40,404 out of 60,222

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 11,649 out of 60,222
    • In bioinformatics: 1,954 out of 6,078
  • Year to date:
    • Site-wide: 47,450 out of 60,222
  • Since beginning of last month:
    • Site-wide: 45,800 out of 60,222

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 15,310 out of 60,222
    • In developmental biology: 366 out of 1,790
  • Year to date:
    • Site-wide: 7,363 out of 60,222
  • Since beginning of last month:
    • Site-wide: 20,511 out of 60,222

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 20,959 out of 60,222
    • In genomics: 2,372 out of 4,168
  • Year to date:
    • Site-wide: 47,270 out of 60,222
  • Since beginning of last month:
    • Site-wide: 50,627 out of 60,222

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