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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 45,784 bioRxiv papers from 206,165 authors.

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 55,182 (rank: 176 out of 206,278)
  • Categories:
    • bioinformatics: 24,175 (rank: 54 out of 18,909)
    • developmental biology: 420 (rank: 2,447 (tie) out of 7,222)
    • epidemiology: 917 (rank: 768 (tie) out of 7,109)
    • genomics: 28,093 (rank: 164 out of 24,480)
    • microbiology: 1,577 (rank: 845 (tie) out of 19,465)

Downloads per author, site-wide

Preprints

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper

No bioRxiv download data for this paper yet.

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 16,568 times
  • Download rankings, all-time:
    • Site-wide: 30 out of 45,813
    • In bioinformatics: 4 out of 4,918
  • Year to date:
    • Site-wide: 391 out of 45,813
  • Since beginning of last month:
    • Site-wide: 339 out of 45,813

When to use Quantile Normalization?

genomics more details view paper
  • Downloaded 10,662 times
  • Download rankings, all-time:
    • Site-wide: 63 out of 45,813
    • In genomics: 21 out of 3,397
  • Year to date:
    • Site-wide: 553 out of 45,813
  • Since beginning of last month:
    • Site-wide: 541 out of 45,813

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 8,975 times
  • Download rankings, all-time:
    • Site-wide: 93 out of 45,813
    • In genomics: 31 out of 3,397
  • Year to date:
    • Site-wide: 1,993 out of 45,813
  • Since beginning of last month:
    • Site-wide: 2,353 out of 45,813

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 3,762 times
  • Download rankings, all-time:
    • Site-wide: 471 out of 45,813
    • In bioinformatics: 99 out of 4,918
  • Year to date:
    • Site-wide: 6,958 out of 45,813
  • Since beginning of last month:
    • Site-wide: 4,836 out of 45,813

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,076 times
  • Download rankings, all-time:
    • Site-wide: 1,406 out of 45,813
    • In bioinformatics: 290 out of 4,918
  • Year to date:
    • Site-wide: 33,301 out of 45,813
  • Since beginning of last month:
    • Site-wide: 26,419 out of 45,813

Meta Analysis Of Microbiome Studies Identifies Shared And Disease-Specific Patterns

microbiology more details view paper
  • Downloaded 1,577 times
  • Download rankings, all-time:
    • Site-wide: 2,231 out of 45,813
    • In microbiology: 56 out of 3,490
  • Year to date:
    • Site-wide: 8,078 out of 45,813
  • Since beginning of last month:
    • Site-wide: 7,447 out of 45,813

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,402 times
  • Download rankings, all-time:
    • Site-wide: 2,697 out of 45,813
    • In genomics: 545 out of 3,397
  • Year to date:
    • Site-wide: 22,206 out of 45,813
  • Since beginning of last month:
    • Site-wide: 22,571 out of 45,813

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,351 times
  • Download rankings, all-time:
    • Site-wide: 2,873 out of 45,813
    • In genomics: 576 out of 3,397
  • Year to date:
    • Site-wide: 5,965 out of 45,813
  • Since beginning of last month:
    • Site-wide: 4,716 out of 45,813

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,338 times
  • Download rankings, all-time:
    • Site-wide: 2,918 out of 45,813
    • In genomics: 581 out of 3,397
  • Year to date:
    • Site-wide: 14,924 out of 45,813
  • Since beginning of last month:
    • Site-wide: 12,620 out of 45,813

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,203 times
  • Download rankings, all-time:
    • Site-wide: 3,482 out of 45,813
    • In genomics: 667 out of 3,397
  • Year to date:
    • Site-wide: 9,942 out of 45,813
  • Since beginning of last month:
    • Site-wide: 12,701 out of 45,813

IVT-seq reveals extreme bias in RNA-sequencing

genomics more details view paper
  • Downloaded 1,189 times
  • Download rankings, all-time:
    • Site-wide: 3,548 out of 45,813
    • In genomics: 677 out of 3,397
  • Year to date:
    • Site-wide: 42,500 out of 45,813
  • Since beginning of last month:
    • Site-wide: 41,143 out of 45,813

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,065 times
  • Download rankings, all-time:
    • Site-wide: 4,213 out of 45,813
    • In bioinformatics: 855 out of 4,918
  • Year to date:
    • Site-wide: 20,063 out of 45,813
  • Since beginning of last month:
    • Site-wide: 18,254 out of 45,813

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 917 times
  • Download rankings, all-time:
    • Site-wide: 5,339 out of 45,813
    • In epidemiology: 55 out of 1,253
  • Year to date:
    • Site-wide: 1,879 out of 45,813
  • Since beginning of last month:
    • Site-wide: 3,024 out of 45,813

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 863 times
  • Download rankings, all-time:
    • Site-wide: 5,846 out of 45,813
    • In genomics: 989 out of 3,397
  • Year to date:
    • Site-wide: 6,237 out of 45,813
  • Since beginning of last month:
    • Site-wide: 8,132 out of 45,813

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 714 times
  • Download rankings, all-time:
    • Site-wide: 7,755 out of 45,813
    • In genomics: 1,196 out of 3,397
  • Year to date:
    • Site-wide: 34,096 out of 45,813
  • Since beginning of last month:
    • Site-wide: 34,468 out of 45,813

Interpretable Convolution Methods for Learning Genomic Sequence Motifs

bioinformatics more details view paper
  • Downloaded 704 times
  • Download rankings, all-time:
    • Site-wide: 7,910 out of 45,813
    • In bioinformatics: 1,447 out of 4,918
  • Year to date:
    • Site-wide: 4,299 out of 45,813
  • Since beginning of last month:
    • Site-wide: 6,132 out of 45,813

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 15,223 out of 45,813
    • In developmental biology: 378 out of 1,359
  • Year to date:
    • Site-wide: 2,099 out of 45,813
  • Since beginning of last month:
    • Site-wide: 2,562 out of 45,813

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 396 times
  • Download rankings, all-time:
    • Site-wide: 16,205 out of 45,813
    • In genomics: 1,952 out of 3,397
  • Year to date:
    • Site-wide: 29,422 out of 45,813
  • Since beginning of last month:
    • Site-wide: 36,744 out of 45,813

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