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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 53,027 bioRxiv papers from 245,564 authors.

Author: Rafael A. Irizarry

Rankings

  • All-time downloads: 55,902 (rank: 191 out of 245,564)
  • Categories:
    • bioinformatics: 21,473 (rank: 67 out of 21,725)
    • developmental biology: 534 (rank: 2,438 (tie) out of 8,504)
    • epidemiology: 1,275 (rank: 654 (tie) out of 9,248)
    • genomics: 32,620 (rank: 164 out of 28,414)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 17,320 times
  • Download rankings, all-time:
    • Site-wide: 31 out of 53,027
    • In bioinformatics: 4 out of 5,533
  • Year to date:
    • Site-wide: 408 out of 53,027
  • Since beginning of last month:
    • Site-wide: 537 out of 53,027

When to use Quantile Normalization?

genomics more details view paper
  • Downloaded 11,831 times
  • Download rankings, all-time:
    • Site-wide: 63 out of 53,027
    • In genomics: 20 out of 3,782
  • Year to date:
    • Site-wide: 262 out of 53,027
  • Since beginning of last month:
    • Site-wide: 322 out of 53,027

Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

genomics more details view paper
  • Downloaded 9,357 times
  • Download rankings, all-time:
    • Site-wide: 102 out of 53,027
    • In genomics: 35 out of 3,782
  • Year to date:
    • Site-wide: 1,705 out of 53,027
  • Since beginning of last month:
    • Site-wide: 2,610 out of 53,027

Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

genomics more details view paper
  • Downloaded 3,737 times
  • Download rankings, all-time:
    • Site-wide: 600 out of 53,027
    • In genomics: 161 out of 3,782
  • Year to date:
    • Site-wide: 49 out of 53,027
  • Since beginning of last month:
    • Site-wide: 237 out of 53,027

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,147 times
  • Download rankings, all-time:
    • Site-wide: 1,634 out of 53,027
    • In bioinformatics: 334 out of 5,533
  • Year to date:
    • Site-wide: 26,866 out of 53,027
  • Since beginning of last month:
    • Site-wide: 13,405 out of 53,027

Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing

genomics more details view paper
  • Downloaded 1,446 times
  • Download rankings, all-time:
    • Site-wide: 3,169 out of 53,027
    • In genomics: 622 out of 3,782
  • Year to date:
    • Site-wide: 30,552 out of 53,027
  • Since beginning of last month:
    • Site-wide: 29,632 out of 53,027

Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing

genomics more details view paper
  • Downloaded 1,428 times
  • Download rankings, all-time:
    • Site-wide: 3,240 out of 53,027
    • In genomics: 638 out of 3,782
  • Year to date:
    • Site-wide: 11,679 out of 53,027
  • Since beginning of last month:
    • Site-wide: 18,326 out of 53,027

Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-Seq data

genomics more details view paper
  • Downloaded 1,383 times
  • Download rankings, all-time:
    • Site-wide: 3,423 out of 53,027
    • In genomics: 661 out of 3,782
  • Year to date:
    • Site-wide: 25,658 out of 53,027
  • Since beginning of last month:
    • Site-wide: 32,195 out of 53,027

Smooth Quantile Normalization

genomics more details view paper
  • Downloaded 1,301 times
  • Download rankings, all-time:
    • Site-wide: 3,769 out of 53,027
    • In genomics: 711 out of 3,782
  • Year to date:
    • Site-wide: 13,047 out of 53,027
  • Since beginning of last month:
    • Site-wide: 15,914 out of 53,027

Post-Hurricane Vital Statistics Expose Fragility of Puerto Rico's Health System

epidemiology more details view paper
  • Downloaded 1,275 times
  • Download rankings, all-time:
    • Site-wide: 3,911 out of 53,027
    • In epidemiology: 40 out of 1,543
  • Year to date:
    • Site-wide: 1,792 out of 53,027
  • Since beginning of last month:
    • Site-wide: 4,791 out of 53,027

Selection Corrected Statistical Inference for Region Detection with High-throughput Assays

bioinformatics more details view paper
  • Downloaded 1,112 times
  • Download rankings, all-time:
    • Site-wide: 4,855 out of 53,027
    • In bioinformatics: 962 out of 5,533
  • Year to date:
    • Site-wide: 28,403 out of 53,027
  • Since beginning of last month:
    • Site-wide: 28,599 out of 53,027

Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation

genomics more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 5,998 out of 53,027
    • In genomics: 1,004 out of 3,782
  • Year to date:
    • Site-wide: 9,265 out of 53,027
  • Since beginning of last month:
    • Site-wide: 13,552 out of 53,027

Interpretable Convolution Methods for Learning Genomic Sequence Motifs

bioinformatics more details view paper
  • Downloaded 894 times
  • Download rankings, all-time:
    • Site-wide: 6,887 out of 53,027
    • In bioinformatics: 1,263 out of 5,533
  • Year to date:
    • Site-wide: 4,835 out of 53,027
  • Since beginning of last month:
    • Site-wide: 7,494 out of 53,027

High-throughput identification of RNA nuclear enrichment sequences

genomics more details view paper
  • Downloaded 738 times
  • Download rankings, all-time:
    • Site-wide: 9,236 out of 53,027
    • In genomics: 1,377 out of 3,782
  • Year to date:
    • Site-wide: 44,315 out of 53,027
  • Since beginning of last month:
    • Site-wide: 50,359 out of 53,027

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

developmental biology more details view paper
  • Downloaded 534 times
  • Download rankings, all-time:
    • Site-wide: 14,246 out of 53,027
    • In developmental biology: 343 out of 1,555
  • Year to date:
    • Site-wide: 4,831 out of 53,027
  • Since beginning of last month:
    • Site-wide: 12,372 out of 53,027

Technology-independent estimation of cell type composition using differentially methylated regions

genomics more details view paper
  • Downloaded 424 times
  • Download rankings, all-time:
    • Site-wide: 18,820 out of 53,027
    • In genomics: 2,207 out of 3,782
  • Year to date:
    • Site-wide: 40,464 out of 53,027
  • Since beginning of last month:
    • Site-wide: 38,419 out of 53,027

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