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Author: Patrick D. Schloss

Rankings

  • All-time downloads: 17,207 (rank: 3,215 (tie) out of 361,918)
  • Categories:
    • microbiology: 17,207 (rank: 430 out of 39,954)

Downloads per author, site-wide

Preprints

Clostridium difficile colonizes alternative nutrient niches during infection across distinct murine gut microbiomes

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  • Downloaded 1,419 times
  • Download rankings, all-time:
    • Site-wide: 5,981 out of 84,050
    • In microbiology: 337 out of 7,156
  • Year to date:
    • Site-wide: 25,030 out of 84,050
  • Since beginning of last month:
    • Site-wide: 22,490 out of 84,050

Preprinting Microbiology

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  • Download rankings, all-time:
    • Site-wide: 6,182 out of 84,050
    • In microbiology: 352 out of 7,156
  • Year to date:
    • Site-wide: 39,946 out of 84,050
  • Since beginning of last month:
    • Site-wide: 49,285 out of 84,050

The status of the microbial census: an update

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  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 6,669 out of 84,050
    • In microbiology: 374 out of 7,156
  • Year to date:
    • Site-wide: 68,479 out of 84,050
  • Since beginning of last month:
    • Site-wide: 63,675 out of 84,050

Application of database-independent approach to assess the quality of OTU picking methods

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  • Downloaded 1,322 times
  • Download rankings, all-time:
    • Site-wide: 6,755 out of 84,050
    • In microbiology: 382 out of 7,156
  • Year to date:
    • Site-wide: 58,730 out of 84,050
  • Since beginning of last month:
    • Site-wide: 74,358 out of 84,050

Biogeography & environmental conditions shape bacteriophage-bacteria networks across the human microbiome

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  • Downloaded 1,278 times
  • Download rankings, all-time:
    • Site-wide: 7,156 out of 84,050
    • In microbiology: 405 out of 7,156
  • Year to date:
    • Site-wide: 36,406 out of 84,050
  • Since beginning of last month:
    • Site-wide: 44,467 out of 84,050

OptiClust: Improved method for assigning amplicon-based sequence data to operational taxonomic units

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  • Downloaded 1,273 times
  • Download rankings, all-time:
    • Site-wide: 7,201 out of 84,050
    • In microbiology: 407 out of 7,156
  • Year to date:
    • Site-wide: 44,864 out of 84,050
  • Since beginning of last month:
    • Site-wide: 47,815 out of 84,050

The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome

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  • Downloaded 1,240 times
  • Download rankings, all-time:
    • Site-wide: 7,516 out of 84,050
    • In microbiology: 428 out of 7,156
  • Year to date:
    • Site-wide: 29,772 out of 84,050
  • Since beginning of last month:
    • Site-wide: 20,515 out of 84,050

A framework for effective application of machine learning to microbiome-based classification problems

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  • Downloaded 1,236 times
  • Download rankings, all-time:
    • Site-wide: 7,558 out of 84,050
    • In microbiology: 430 out of 7,156
  • Year to date:
    • Site-wide: 1,634 out of 84,050
  • Since beginning of last month:
    • Site-wide: 1,847 out of 84,050

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome

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  • Downloaded 1,221 times
  • Download rankings, all-time:
    • Site-wide: 7,708 out of 84,050
    • In microbiology: 440 out of 7,156
  • Year to date:
    • Site-wide: 43,355 out of 84,050
  • Since beginning of last month:
    • Site-wide: 42,196 out of 84,050

The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data

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  • Downloaded 1,068 times
  • Download rankings, all-time:
    • Site-wide: 9,587 out of 84,050
    • In microbiology: 550 out of 7,156
  • Year to date:
    • Site-wide: 38,674 out of 84,050
  • Since beginning of last month:
    • Site-wide: 37,013 out of 84,050

Spatial variation of the native colon microbiota in healthy adults

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  • Downloaded 918 times
  • Download rankings, all-time:
    • Site-wide: 12,261 out of 84,050
    • In microbiology: 700 out of 7,156
  • Year to date:
    • Site-wide: 37,228 out of 84,050
  • Since beginning of last month:
    • Site-wide: 45,826 out of 84,050

Clostridium difficile alters the structure and metabolism of distinct cecal microbiomes during initial infection to promote sustained colonization

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  • Downloaded 760 times
  • Download rankings, all-time:
    • Site-wide: 16,351 out of 84,050
    • In microbiology: 945 out of 7,156
  • Year to date:
    • Site-wide: 55,050 out of 84,050
  • Since beginning of last month:
    • Site-wide: 55,638 out of 84,050

DNA from fecal immunochemical test can replace stool for microbiota-based colorectal cancer screening

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  • Downloaded 579 times
  • Download rankings, all-time:
    • Site-wide: 24,328 out of 84,050
    • In microbiology: 1,492 out of 7,156
  • Year to date:
    • Site-wide: 68,508 out of 84,050
  • Since beginning of last month:
    • Site-wide: 69,874 out of 84,050

Normalization of the microbiota in patients after treatment for colonic lesions

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  • Downloaded 574 times
  • Download rankings, all-time:
    • Site-wide: 24,594 out of 84,050
    • In microbiology: 1,513 out of 7,156
  • Year to date:
    • Site-wide: 65,742 out of 84,050
  • Since beginning of last month:
    • Site-wide: 75,759 out of 84,050

Fecal short-chain fatty acids are not predictive of colonic tumor status and cannot be predicted based on bacterial community structure

microbiology more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 25,720 out of 84,050
    • In microbiology: 1,600 out of 7,156
  • Year to date:
    • Site-wide: 61,435 out of 84,050
  • Since beginning of last month:
    • Site-wide: 55,168 out of 84,050

Nonsteroidal anti-inflammatory drugs alter the microbiota and exacerbate Clostridium difficile colitis while dysregulating the inflammatory response

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  • Downloaded 452 times
  • Download rankings, all-time:
    • Site-wide: 33,092 out of 84,050
    • In microbiology: 2,157 out of 7,156
  • Year to date:
    • Site-wide: 55,185 out of 84,050
  • Since beginning of last month:
    • Site-wide: 64,158 out of 84,050

Leveraging Existing 16S rRNA Gene Surveys to Identify Reproducible Biomarkers in Individuals with Colorectal Tumors

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  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 36,151 out of 84,050
    • In microbiology: 2,409 out of 7,156
  • Year to date:
    • Site-wide: 75,545 out of 84,050
  • Since beginning of last month:
    • Site-wide: 61,694 out of 84,050

The proton pump inhibitor omeprazole does not promote Clostridioides difficile colonization in a murine model

microbiology more details view paper
  • Downloaded 169 times
  • Download rankings, all-time:
    • Site-wide: 70,418 out of 84,050
    • In microbiology: 5,532 out of 7,156
  • Year to date:
    • Site-wide: 48,533 out of 84,050
  • Since beginning of last month:
    • Site-wide: 65,584 out of 84,050

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