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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,773 bioRxiv papers from 265,845 authors.

Author: A Sarah Walker

Rankings

  • All-time downloads: 19,148 (rank: 1,181 (tie) out of 265,845)
  • Categories:
    • bioinformatics: 5,918 (rank: 748 (tie) out of 23,169)
    • epidemiology: 137 (rank: 6,731 (tie) out of 9,583)
    • genomics: 4,272 (rank: 2,849 (tie) out of 30,324)
    • microbiology: 8,821 (rank: 40 out of 26,398)

Downloads per author, site-wide

Preprints

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
  • Downloaded 4,357 times
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    • Site-wide: 480 out of 57,773
    • In bioinformatics: 97 out of 5,897
  • Year to date:
    • Site-wide: 60 out of 57,773
  • Since beginning of last month:
    • Site-wide: 115 out of 57,773

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,103 times
  • Download rankings, all-time:
    • Site-wide: 936 out of 57,773
    • In genomics: 236 out of 4,057
  • Year to date:
    • Site-wide: 44,927 out of 57,773
  • Since beginning of last month:
    • Site-wide: 33,155 out of 57,773

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples.

microbiology more details view paper
  • Downloaded 1,904 times
  • Download rankings, all-time:
    • Site-wide: 2,241 out of 57,773
    • In microbiology: 50 out of 4,604
  • Year to date:
    • Site-wide: 31,253 out of 57,773
  • Since beginning of last month:
    • Site-wide: 15,211 out of 57,773

Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine learning approaches

microbiology more details view paper
  • Downloaded 1,454 times
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    • Site-wide: 3,520 out of 57,773
    • In microbiology: 102 out of 4,604
  • Year to date:
    • Site-wide: 522 out of 57,773
  • Since beginning of last month:
    • Site-wide: 407 out of 57,773

Modelling microbiome recovery after antibiotics using a stability landscape framework

microbiology more details view paper
  • Downloaded 1,179 times
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    • Site-wide: 4,943 out of 57,773
    • In microbiology: 174 out of 4,604
  • Year to date:
    • Site-wide: 4,132 out of 57,773
  • Since beginning of last month:
    • Site-wide: 8,142 out of 57,773

Severe infections emerge from the microbiome by adaptive evolution

genomics more details view paper
  • Downloaded 1,169 times
  • Download rankings, all-time:
    • Site-wide: 5,001 out of 57,773
    • In genomics: 864 out of 4,057
  • Year to date:
    • Site-wide: 39,694 out of 57,773
  • Since beginning of last month:
    • Site-wide: 24,867 out of 57,773

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 1,049 times
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    • Site-wide: 6,033 out of 57,773
    • In bioinformatics: 1,131 out of 5,897
  • Year to date:
    • Site-wide: 995 out of 57,773
  • Since beginning of last month:
    • Site-wide: 2,111 out of 57,773

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
  • Downloaded 798 times
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    • Site-wide: 9,296 out of 57,773
    • In microbiology: 404 out of 4,604
  • Year to date:
    • Site-wide: 1,617 out of 57,773
  • Since beginning of last month:
    • Site-wide: 8,452 out of 57,773

High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families

microbiology more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 11,733 out of 57,773
    • In microbiology: 535 out of 4,604
  • Year to date:
    • Site-wide: 37,607 out of 57,773
  • Since beginning of last month:
    • Site-wide: 23,627 out of 57,773

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

microbiology more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 12,129 out of 57,773
    • In microbiology: 562 out of 4,604
  • Year to date:
    • Site-wide: 2,235 out of 57,773
  • Since beginning of last month:
    • Site-wide: 1,515 out of 57,773

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 17,071 out of 57,773
    • In bioinformatics: 2,614 out of 5,897
  • Year to date:
    • Site-wide: 20,676 out of 57,773
  • Since beginning of last month:
    • Site-wide: 26,965 out of 57,773

Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

microbiology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 20,511 out of 57,773
    • In microbiology: 1,102 out of 4,604
  • Year to date:
    • Site-wide: 55,410 out of 57,773
  • Since beginning of last month:
    • Site-wide: 55,122 out of 57,773

Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

microbiology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 31,740 out of 57,773
    • In microbiology: 1,998 out of 4,604
  • Year to date:
    • Site-wide: 37,247 out of 57,773
  • Since beginning of last month:
    • Site-wide: 31,009 out of 57,773

A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 246 times
  • Download rankings, all-time:
    • Site-wide: 35,137 out of 57,773
    • In microbiology: 2,280 out of 4,604
  • Year to date:
    • Site-wide: 46,482 out of 57,773
  • Since beginning of last month:
    • Site-wide: 52,186 out of 57,773

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

microbiology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 38,032 out of 57,773
    • In microbiology: 2,513 out of 4,604
  • Year to date:
    • Site-wide: 13,472 out of 57,773
  • Since beginning of last month:
    • Site-wide: 34,205 out of 57,773

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

microbiology more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 38,763 out of 57,773
    • In microbiology: 2,579 out of 4,604
  • Year to date:
    • Site-wide: 14,138 out of 57,773
  • Since beginning of last month:
    • Site-wide: 1,571 out of 57,773

Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline

microbiology more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 39,369 out of 57,773
    • In microbiology: 2,642 out of 4,604
  • Year to date:
    • Site-wide: 41,602 out of 57,773
  • Since beginning of last month:
    • Site-wide: 19,408 out of 57,773

Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

microbiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 44,605 out of 57,773
    • In microbiology: 3,128 out of 4,604
  • Year to date:
    • Site-wide: 35,000 out of 57,773
  • Since beginning of last month:
    • Site-wide: 37,745 out of 57,773

Klebsiella quasipneumonaiae provides a window into carbapenemase gene transfer, plasmid rearrangements and nosocomial acquisition from the hospital environment

microbiology more details view paper
  • Downloaded 153 times
  • Download rankings, all-time:
    • Site-wide: 45,932 out of 57,773
    • In microbiology: 3,281 out of 4,604
  • Year to date:
    • Site-wide: 31,707 out of 57,773
  • Since beginning of last month:
    • Site-wide: 44,784 out of 57,773

When do big problems far away become smaller than the problems closer to home: Lessons for antimicrobial resistance from Father Ted

epidemiology more details view paper
  • Downloaded 137 times
  • Download rankings, all-time:
    • Site-wide: 47,917 out of 57,773
    • In epidemiology: 1,027 out of 1,556
  • Year to date:
    • Site-wide: 23,987 out of 57,773
  • Since beginning of last month:
    • Site-wide: 42,124 out of 57,773

M. tuberculosis microvariation is common and is associated with transmission: analysis of three years prospective universal sequencing in England

microbiology more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 50,376 out of 57,773
    • In microbiology: 3,726 out of 4,604
  • Year to date:
    • Site-wide: 28,056 out of 57,773
  • Since beginning of last month:
    • Site-wide: 16,012 out of 57,773

Selective culture enrichment and sequencing of faeces to enhance detection of antimicrobial resistance genes

microbiology more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 51,481 out of 57,773
    • In microbiology: 3,824 out of 4,604
  • Year to date:
    • Site-wide: 30,122 out of 57,773
  • Since beginning of last month:
    • Site-wide: 39,231 out of 57,773

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