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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 71,060 bioRxiv papers from 310,082 authors.

Author: A. Sarah Walker

Rankings

  • All-time downloads: 26,121 (rank: 930 out of 309,680)
  • Categories:
    • bioinformatics: 8,829 (rank: 427 out of 26,903)
    • epidemiology: 721 (rank: 1,641 (tie) out of 9,541)
    • genomics: 4,576 (rank: 3,186 out of 34,932)
    • microbiology: 11,995 (rank: 61 out of 32,188)

Downloads per author, site-wide

Preprints

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
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    • In bioinformatics: 45 out of 6,942
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    • Site-wide: 458 out of 70,955

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
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    • Site-wide: 39,081 out of 70,955

Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine learning approaches.

microbiology more details view paper
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Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples.

microbiology more details view paper
  • Downloaded 1,960 times
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Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
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    • In bioinformatics: 825 out of 6,942
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    • Site-wide: 3,596 out of 70,955

Modelling microbiome recovery after antibiotics using a stability landscape framework

microbiology more details view paper
  • Downloaded 1,296 times
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    • In microbiology: 191 out of 5,765
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Severe infections emerge from the microbiome by adaptive evolution

genomics more details view paper
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The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
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    • In microbiology: 347 out of 5,765
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Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

microbiology more details view paper
  • Downloaded 987 times
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    • In microbiology: 364 out of 5,765
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    • Site-wide: 11,026 out of 70,955

MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

microbiology more details view paper
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    • In microbiology: 382 out of 5,765
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    • Site-wide: 10,149 out of 70,955

High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families

microbiology more details view paper
  • Downloaded 709 times
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    • In microbiology: 679 out of 5,765
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TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 2,874 out of 6,942
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Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

microbiology more details view paper
  • Downloaded 460 times
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    • In microbiology: 1,411 out of 5,765
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    • Site-wide: 56,896 out of 70,955

Trends in Escherichia coli bloodstream infection, urinary tract infections and antibiotic susceptibilities in Oxfordshire, 1998-2016: an observational study

epidemiology more details view paper
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    • In epidemiology: 528 out of 1,556
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    • Site-wide: 54,057 out of 70,955

Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

microbiology more details view paper
  • Downloaded 318 times
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    • In microbiology: 2,371 out of 5,765
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    • Site-wide: 43,990 out of 70,955

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

microbiology more details view paper
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    • In microbiology: 2,626 out of 5,765
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    • Site-wide: 48,360 out of 70,955

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

microbiology more details view paper
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    • In microbiology: 2,656 out of 5,765
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A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 284 times
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    • Site-wide: 41,012 out of 70,955
    • In microbiology: 2,695 out of 5,765
  • Year to date:
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    • Site-wide: 29,663 out of 70,955

Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline

microbiology more details view paper
  • Downloaded 238 times
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    • Site-wide: 46,807 out of 70,955
    • In microbiology: 3,202 out of 5,765
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    • Site-wide: 53,967 out of 70,955

Genomic epidemiology of a complex, multi-species plasmid-borne blaKPC carbapenemase outbreak in Enterobacterales in the UK, 2009-2014

genomics more details view paper
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    • In genomics: 4,012 out of 4,733
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    • Site-wide: 13,019 out of 70,955
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    • Site-wide: 27,645 out of 70,955

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

epidemiology more details view paper
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    • In epidemiology: 994 out of 1,556
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Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

microbiology more details view paper
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    • In microbiology: 3,779 out of 5,765
  • Year to date:
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    • Site-wide: 51,722 out of 70,955

Klebsiella quasipneumonaiae provides a window into carbapenemase gene transfer, plasmid rearrangements and nosocomial acquisition from the hospital environment

microbiology more details view paper
  • Downloaded 194 times
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    • In microbiology: 3,791 out of 5,765
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    • Site-wide: 60,782 out of 70,955

M. tuberculosis microvariation is common and is associated with transmission: analysis of three years prospective universal sequencing in England

microbiology more details view paper
  • Downloaded 189 times
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    • In microbiology: 3,864 out of 5,765
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  • Since beginning of last month:
    • Site-wide: 40,049 out of 70,955

When do big problems far away become smaller than the problems closer to home: Lessons for antimicrobial resistance from Father Ted

epidemiology more details view paper
  • Downloaded 172 times
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    • In epidemiology: 1,135 out of 1,556
  • Year to date:
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    • Site-wide: 61,768 out of 70,955

Selective culture enrichment and sequencing of faeces to enhance detection of antimicrobial resistance genes

microbiology more details view paper
  • Downloaded 143 times
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    • Site-wide: 60,614 out of 70,955
    • In microbiology: 4,541 out of 5,765
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    • Site-wide: 62,045 out of 70,955
  • Since beginning of last month:
    • Site-wide: 54,569 out of 70,955

Phenotypically distinct human sequence is widespread in publicly archived microbial reads: an evaluation of methods for its detection

bioinformatics more details view paper
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    • Site-wide: 67,106 out of 70,955
    • In bioinformatics: 6,707 out of 6,942
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 5,411 out of 70,955

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