Author: Per Halkjær Nielsen

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Preprints

Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

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Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

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Identifying the abundant and active microorganisms common to full scale anaerobic digesters

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The ecology of the Chloroflexi in full-scale activated sludge wastewater treatment plants

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Peatland Acidobacteria with a dissimilatory sulfur metabolism

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Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

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Species-level microbiome composition of activated sludge - introducing the MiDAS 3 ecosystem-specific reference database and taxonomy

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Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

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Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH

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The proteome of Tetrasphaera elongata is adapted to changing conditions in wastewater treatment plants

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Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbiome structure and key drivers

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A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria

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Candidatus Dechloromonas phosphatis and Candidatus Dechloromonas phosphovora, two novel polyphosphate accumulating organisms abundant in wastewater treatment systems

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Quantification of biologically and chemically bound phosphorus in activated sludge from full-scale plants with biological P-removal

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