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Author: Søren M. Karst

Rankings

  • All-time downloads: 21,905 (rank: 2,491 out of 385,139)
  • Categories:
    • bioinformatics: 4,217 (rank: 2,209 (tie) out of 32,961)
    • ecology: 3,448 (rank: 304 (tie) out of 16,524)
    • microbiology: 5,664 (rank: 1,170 out of 43,498)
    • molecular biology: 8,576 (rank: 173 (tie) out of 20,046)

Downloads per author, site-wide

Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper
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    • In molecular biology: 10 out of 3,057
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    • Site-wide: 193 out of 89,956
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    • Site-wide: 179 out of 89,956

Thousands of primer-free, high-quality, full-length SSU rRNA sequences from all domains of life

ecology more details view paper
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    • Site-wide: 1,453 out of 89,956
    • In ecology: 21 out of 3,950
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    • Site-wide: 51,277 out of 89,956
  • Since beginning of last month:
    • Site-wide: 39,756 out of 89,956

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

bioinformatics more details view paper
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    • Site-wide: 2,217 out of 89,956
    • In bioinformatics: 399 out of 8,483
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    • Site-wide: 3,714 out of 89,956
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    • Site-wide: 4,718 out of 89,956

Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

microbiology more details view paper
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    • In microbiology: 235 out of 7,756
  • Year to date:
    • Site-wide: 3,043 out of 89,956
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    • Site-wide: 1,722 out of 89,956

Identifying the abundant and active microorganisms common to full scale anaerobic digesters

microbiology more details view paper
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    • Site-wide: 5,731 out of 89,956
    • In microbiology: 349 out of 7,756
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    • Site-wide: 11,831 out of 89,956
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    • Site-wide: 12,022 out of 89,956

mmgenome: a toolbox for reproducible genome extraction from metagenomes

bioinformatics more details view paper
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    • Site-wide: 5,897 out of 89,956
    • In bioinformatics: 1,051 out of 8,483
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    • Site-wide: 24,618 out of 89,956

Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

microbiology more details view paper
  • Downloaded 1,199 times
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    • Site-wide: 8,592 out of 89,956
    • In microbiology: 514 out of 7,756
  • Year to date:
    • Site-wide: 1,161 out of 89,956
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    • Site-wide: 1,153 out of 89,956

Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

microbiology more details view paper
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    • Site-wide: 26,679 out of 89,956
    • In microbiology: 1,708 out of 7,756
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    • Site-wide: 42,962 out of 89,956

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

microbiology more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 46,011 out of 89,956
    • In microbiology: 3,290 out of 7,756
  • Year to date:
    • Site-wide: 7,030 out of 89,956
  • Since beginning of last month:
    • Site-wide: 4,463 out of 89,956

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