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Author: Søren M Karst

Rankings

  • All-time downloads: 28,306 (rank: 5,083 )
  • Categories:
    • bioinformatics: 5,043 (rank: 2,240 (tie) )
    • ecology: 3,544 (rank: 428 (tie) )
    • microbiology: 7,394 (rank: 1,581 )
    • molecular biology: 12,325 (rank: 153 (tie) )

Downloads per author, site-wide

Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

molecular biology more details view paper
  • Downloaded 12,325 times
  • Download rankings, all-time:
    • Site-wide: 555
    • In molecular biology: 8
  • Year to date:
    • Site-wide: 678
  • Since beginning of last month:
    • Site-wide: 678

Thousands of primer-free, high-quality, full-length SSU rRNA sequences from all domains of life

ecology more details view paper
  • Downloaded 3,544 times
  • Download rankings, all-time:
    • Site-wide: 3,032
    • In ecology: 27
  • Year to date:
    • Site-wide: 47,957
  • Since beginning of last month:
    • Site-wide: 47,957

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

bioinformatics more details view paper
  • Downloaded 3,421 times
  • Download rankings, all-time:
    • Site-wide: 3,200
    • In bioinformatics: 330
  • Year to date:
    • Site-wide: 4,557
  • Since beginning of last month:
    • Site-wide: 4,557

Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

microbiology more details view paper
  • Downloaded 2,525 times
  • Download rankings, all-time:
    • Site-wide: 4,926
    • In microbiology: 289
  • Year to date:
    • Site-wide: 12,726
  • Since beginning of last month:
    • Site-wide: 12,726

Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

microbiology more details view paper
  • Downloaded 1,879 times
  • Download rankings, all-time:
    • Site-wide: 7,612
    • In microbiology: 418
  • Year to date:
    • Site-wide: 5,534
  • Since beginning of last month:
    • Site-wide: 5,534

Identifying the abundant and active microorganisms common to full scale anaerobic digesters

microbiology more details view paper
  • Downloaded 1,721 times
  • Download rankings, all-time:
    • Site-wide: 8,717
    • In microbiology: 487
  • Year to date:
    • Site-wide: 28,351
  • Since beginning of last month:
    • Site-wide: 28,351

mmgenome: a toolbox for reproducible genome extraction from metagenomes

bioinformatics more details view paper
  • Downloaded 1,622 times
  • Download rankings, all-time:
    • Site-wide: 9,539
    • In bioinformatics: 1,171
  • Year to date:
    • Site-wide: 76,399
  • Since beginning of last month:
    • Site-wide: 76,399

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

microbiology more details view paper
  • Downloaded 650 times
  • Download rankings, all-time:
    • Site-wide: 35,853
    • In microbiology: 2,135
  • Year to date:
    • Site-wide: 44,676
  • Since beginning of last month:
    • Site-wide: 44,676

Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

microbiology more details view paper
  • Downloaded 619 times
  • Download rankings, all-time:
    • Site-wide: 38,162
    • In microbiology: 2,306
  • Year to date:
    • Site-wide: 115,654
  • Since beginning of last month:
    • Site-wide: 115,654

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