Author: Søren M Karst

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Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

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Thousands of primer-free, high-quality, full-length SSU rRNA sequences from all domains of life

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ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

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Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

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Identifying the abundant and active microorganisms common to full scale anaerobic digesters

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Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

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mmgenome: a toolbox for reproducible genome extraction from metagenomes

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Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

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Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

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