Author: Søren M Karst

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Preprints

Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

• Downloaded 12,325 times
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  • Site-wide: 555
  • In molecular biology: 8
• Year to date:
  • Site-wide: 678
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  • Site-wide: 678

Thousands of primer-free, high-quality, full-length SSU rRNA sequences from all domains of life

• Downloaded 3,544 times
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  • Site-wide: 3,032
  • In ecology: 27
• Year to date:
  • Site-wide: 47,957
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  • Site-wide: 47,957

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

• Downloaded 3,421 times
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  • Site-wide: 3,200
  • In bioinformatics: 330
• Year to date:
  • Site-wide: 4,557
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  • Site-wide: 4,557

Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

• Downloaded 2,525 times
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  • Site-wide: 4,926
  • In microbiology: 289
• Year to date:
  • Site-wide: 12,726
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  • Site-wide: 12,726

Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

• Downloaded 1,879 times
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  • Site-wide: 7,612
  • In microbiology: 418
• Year to date:
  • Site-wide: 5,534
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  • Site-wide: 5,534

Identifying the abundant and active microorganisms common to full scale anaerobic digesters

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  • Site-wide: 8,717
  • In microbiology: 487
• Year to date:
  • Site-wide: 28,351
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  • Site-wide: 28,351

mmgenome: a toolbox for reproducible genome extraction from metagenomes

• Downloaded 1,622 times
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  • Site-wide: 9,539
  • In bioinformatics: 1,171
• Year to date:
  • Site-wide: 76,399
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  • Site-wide: 76,399

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

• Downloaded 650 times
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  • Site-wide: 35,853
  • In microbiology: 2,135
• Year to date:
  • Site-wide: 44,676
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Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

• Downloaded 619 times
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  • Site-wide: 38,162
  • In microbiology: 2,306
• Year to date:
  • Site-wide: 115,654
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  • Site-wide: 115,654