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Author: Keith R Jerome

Rankings

  • All-time downloads: 115,567 (rank: 954 )
  • Categories:
    • bioinformatics: 1,391 (rank: 11,709 (tie) )
    • epidemiology: 11,101 (rank: 1,431 )
    • genomics: 2,599 (rank: 9,806 (tie) )
    • infectious diseases: 63,875 (rank: 779 )
    • microbiology: 26,231 (rank: 574 )
    • pathology: 1,778 (rank: 761 (tie) )
    • public and global health: 8,592 (rank: 633 (tie) )

Downloads per author, site-wide

Preprints

Quantitative measurement of infectious virus in SARS-CoV-2 Alpha, Delta and Epsilon variants reveals higher infectivity (viral titer:RNA ratio) in clinical samples containing the Delta and Epsilon variants.

infectious diseases more details view paper

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Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

infectious diseases more details view paper
  • Downloaded 26,493 times
  • Download rankings, all-time:
    • Site-wide: 288
    • In infectious diseases: 107
  • Year to date:
    • Site-wide: 1,490
  • Since beginning of last month:
    • Site-wide: 12,422

DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP

microbiology more details view paper
  • Downloaded 21,272 times
  • Download rankings, all-time:
    • Site-wide: 373
    • In microbiology: 41
  • Year to date:
    • Site-wide: 2,156
  • Since beginning of last month:
    • Site-wide: 17,256

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

infectious diseases more details view paper
  • Downloaded 9,729 times
  • Download rankings, all-time:
    • Site-wide: 988
    • In infectious diseases: 309
  • Year to date:
    • Site-wide: 1,745
  • Since beginning of last month:
    • Site-wide: 27,444

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,523 times
  • Download rankings, all-time:
    • Site-wide: 1,011
    • In epidemiology: 134
  • Year to date:
    • Site-wide: 8,423
  • Since beginning of last month:
    • Site-wide: 60,418

Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology

public and global health more details view paper
  • Downloaded 8,113 times
  • Download rankings, all-time:
    • Site-wide: 1,243
    • In public and global health: 51
  • Year to date:
    • Site-wide: 6,306
  • Since beginning of last month:
    • Site-wide: 12,287

Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State

infectious diseases more details view paper
  • Downloaded 7,135 times
  • Download rankings, all-time:
    • Site-wide: 1,457
    • In infectious diseases: 402
  • Year to date:
    • Site-wide: 282
  • Since beginning of last month:
    • Site-wide: 49,054

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

infectious diseases more details view paper
  • Downloaded 6,829 times
  • Download rankings, all-time:
    • Site-wide: 1,535
    • In infectious diseases: 417
  • Year to date:
    • Site-wide: 7,083
  • Since beginning of last month:
    • Site-wide: 83,351

Comparative Performance of SARS-CoV-2 Detection Assays using Seven Different Primer/Probe Sets and One Assay Kit

infectious diseases more details view paper
  • Downloaded 3,278 times
  • Download rankings, all-time:
    • Site-wide: 4,292
    • In infectious diseases: 822
  • Year to date:
    • Site-wide: 21,311
  • Since beginning of last month:
    • Site-wide: 98,200

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

microbiology more details view paper
  • Downloaded 1,988 times
  • Download rankings, all-time:
    • Site-wide: 8,871
    • In microbiology: 526
  • Year to date:
    • Site-wide: 15,197
  • Since beginning of last month:
    • Site-wide: 63,231

Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics

infectious diseases more details view paper
  • Downloaded 1,823 times
  • Download rankings, all-time:
    • Site-wide: 10,065
    • In infectious diseases: 1,374
  • Year to date:
    • Site-wide: 26,854
  • Since beginning of last month:
    • Site-wide: 51,470

Anti-SARS-CoV-2 antibody levels are concordant across multiple platforms but are not fully predictive of sterilizing immunity

infectious diseases more details view paper
  • Downloaded 1,802 times
  • Download rankings, all-time:
    • Site-wide: 10,259
    • In infectious diseases: 1,391
  • Year to date:
    • Site-wide: 1,456
  • Since beginning of last month:
    • Site-wide: 2,129

Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories

pathology more details view paper
  • Downloaded 1,778 times
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    • Site-wide: 10,458
    • In pathology: 56
  • Year to date:
    • Site-wide: 49,243
  • Since beginning of last month:
    • Site-wide: 26,240

Evaluation of SARS-CoV-2 neutralization assays for antibody monitoring in natural infection and vaccine trials

infectious diseases more details view paper
  • Downloaded 1,587 times
  • Download rankings, all-time:
    • Site-wide: 12,332
    • In infectious diseases: 1,523
  • Year to date:
    • Site-wide: 2,363
  • Since beginning of last month:
    • Site-wide: 31,690

High Community SARS-CoV-2 Antibody Seroprevalence in a Ski Resort Community, Blaine County, Idaho, US. Preliminary Results

infectious diseases more details view paper
  • Downloaded 1,462 times
  • Download rankings, all-time:
    • Site-wide: 13,949
    • In infectious diseases: 1,611
  • Year to date:
    • Site-wide: 24,983
  • Since beginning of last month:
    • Site-wide: 61,336

SARS-CoV-2 ORF6 disrupts nucleocytoplasmic transport through interactions with Rae1 and Nup98

microbiology more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 19,177
    • In microbiology: 1,106
  • Year to date:
    • Site-wide: 10,323
  • Since beginning of last month:
    • Site-wide: 8,124

Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients

infectious diseases more details view paper
  • Downloaded 1,169 times
  • Download rankings, all-time:
    • Site-wide: 19,508
    • In infectious diseases: 1,892
  • Year to date:
    • Site-wide: 34,499
  • Since beginning of last month:
    • Site-wide: 49,874

Clinical, laboratory, and temporal predictors of neutralizing antibodies to SARS-CoV-2 after COVID-19

infectious diseases more details view paper
  • Downloaded 963 times
  • Download rankings, all-time:
    • Site-wide: 25,926
    • In infectious diseases: 2,169
  • Year to date:
    • Site-wide: 18,219
  • Since beginning of last month:
    • Site-wide: 49,532

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

epidemiology more details view paper
  • Downloaded 925 times
  • Download rankings, all-time:
    • Site-wide: 27,493
    • In epidemiology: 1,529
  • Year to date:
    • Site-wide: 20,088
  • Since beginning of last month:
    • Site-wide: 50,975

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

bioinformatics more details view paper
  • Downloaded 910 times
  • Download rankings, all-time:
    • Site-wide: 28,065
    • In bioinformatics: 3,178
  • Year to date:
    • Site-wide: 63,862
  • Since beginning of last month:
    • Site-wide: None

Outcomes associated with SARS-CoV-2 viral clades in COVID-19

infectious diseases more details view paper
  • Downloaded 781 times
  • Download rankings, all-time:
    • Site-wide: 34,833
    • In infectious diseases: 2,547
  • Year to date:
    • Site-wide: 24,492
  • Since beginning of last month:
    • Site-wide: 22,677

Standard Issue: Copy number heterogeneity of JC virus standards discovered through next-generation sequencing

microbiology more details view paper
  • Downloaded 623 times
  • Download rankings, all-time:
    • Site-wide: 47,038
    • In microbiology: 2,914
  • Year to date:
    • Site-wide: 132,069
  • Since beginning of last month:
    • Site-wide: None

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection

genomics more details view paper
  • Downloaded 523 times
  • Download rankings, all-time:
    • Site-wide: 58,472
    • In genomics: 4,309
  • Year to date:
    • Site-wide: 103,648
  • Since beginning of last month:
    • Site-wide: None

Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain

microbiology more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 59,424
    • In microbiology: 3,820
  • Year to date:
    • Site-wide: 137,961
  • Since beginning of last month:
    • Site-wide: 58,750

Pre-Procedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population Shows Low Rates of Positivity

infectious diseases more details view paper
  • Downloaded 495 times
  • Download rankings, all-time:
    • Site-wide: 62,187
    • In infectious diseases: 3,370
  • Year to date:
    • Site-wide: 108,816
  • Since beginning of last month:
    • Site-wide: 16,374

Viral diversity is an obligate consideration in CRISPR/Cas9 designs for HIV cure

bioinformatics more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 64,068
    • In bioinformatics: 6,250
  • Year to date:
    • Site-wide: 150,737
  • Since beginning of last month:
    • Site-wide: None

An international, inter-laboratory ring trial confirms the feasibility of an open source, extraction-less "direct" RT-qPCR method for reliable detection of SARS-CoV-2 RNA in clinical samples

public and global health more details view paper
  • Downloaded 479 times
  • Download rankings, all-time:
    • Site-wide: 64,284
    • In public and global health: 898
  • Year to date:
    • Site-wide: 9,303
  • Since beginning of last month:
    • Site-wide: 21,231

The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition

genomics more details view paper
  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 66,053
    • In genomics: 4,690
  • Year to date:
    • Site-wide: 105,373
  • Since beginning of last month:
    • Site-wide: 56,221

Limited marginal utility of deep sequencing for HIV drug resistance testing in the age of integrase inhibitors

epidemiology more details view paper
  • Downloaded 410 times
  • Download rankings, all-time:
    • Site-wide: 75,633
    • In epidemiology: 3,246
  • Year to date:
    • Site-wide: 99,517
  • Since beginning of last month:
    • Site-wide: 101,622

Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections

microbiology more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 78,379
    • In microbiology: 5,339
  • Year to date:
    • Site-wide: 136,849
  • Since beginning of last month:
    • Site-wide: None

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

genomics more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 79,780
    • In genomics: 5,267
  • Year to date:
    • Site-wide: 126,577
  • Since beginning of last month:
    • Site-wide: None

Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

genomics more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 92,971
    • In genomics: 5,791
  • Year to date:
    • Site-wide: 136,046
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    • Site-wide: None

RNA sequencing of the in vivo human herpesvirus 6B transcriptome to identify targets for clinical assays distinguishing between latent and active infections

genomics more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 95,029
    • In genomics: 5,860
  • Year to date:
    • Site-wide: 135,912
  • Since beginning of last month:
    • Site-wide: 40,234

Sensitive detection of highly fragmented cytomegalovirus nucleic acid in human cfDNA

microbiology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 108,779
    • In microbiology: 7,865
  • Year to date:
    • Site-wide: 135,099
  • Since beginning of last month:
    • Site-wide: 40,782

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

epidemiology more details view paper
  • Downloaded 243 times
  • Download rankings, all-time:
    • Site-wide: 111,956
    • In epidemiology: 4,670
  • Year to date:
    • Site-wide: 24,109
  • Since beginning of last month:
    • Site-wide: 15,020

Inherited chromosomally integrated HHV-6 demonstrates tissue-specific RNA expression in vivo that correlates with increased antibody immune response.

genomics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 113,943
    • In genomics: 6,487
  • Year to date:
    • Site-wide: 150,365
  • Since beginning of last month:
    • Site-wide: 103,039

Tracking SARS-CoV-2 Spike Protein Mutations in the United States (2020/01 - 2021/03) Using a Statistical Learning Strategy

genomics more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 124,439
    • In genomics: 6,825
  • Year to date:
    • Site-wide: 32,328
  • Since beginning of last month:
    • Site-wide: 90,496

Predicting Infectivity: Comparing Four PCR-based Assays to Detect Culturable SARS-CoV-2 in Clinical Samples

infectious diseases more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 127,557
    • In infectious diseases: 5,087
  • Year to date:
    • Site-wide: 35,105
  • Since beginning of last month:
    • Site-wide: 66,084

Herpes Simplex Virus Mistyping due to HSV-1 x HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B

genomics more details view paper
  • Downloaded 156 times
  • Download rankings, all-time:
    • Site-wide: 132,935
    • In genomics: 7,091
  • Year to date:
    • Site-wide: 133,354
  • Since beginning of last month:
    • Site-wide: None

Response of human liver tissue to innate immune stimuli

infectious diseases more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 134,436
    • In infectious diseases: 5,304
  • Year to date:
    • Site-wide: 54,082
  • Since beginning of last month:
    • Site-wide: 51,854

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