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Author: Alexander L. Greninger

Rankings

  • All-time downloads: 94,219 (rank: 1,162 )
  • Categories:
    • bioinformatics: 1,606 (rank: 8,263 (tie) )
    • epidemiology: 10,569 (rank: 1,011 )
    • genomics: 6,200 (rank: 3,222 (tie) )
    • infectious diseases: 36,866 (rank: 1,046 )
    • microbiology: 37,326 (rank: 252 )
    • pathology: 1,652 (rank: 604 (tie) )

Downloads per author, site-wide

Preprints

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

infectious diseases more details view paper
  • Downloaded 24,871 times
  • Download rankings, all-time:
    • Site-wide: 228
    • In infectious diseases: 88
  • Year to date:
    • Site-wide: 708
  • Since beginning of last month:
    • Site-wide: 629

DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP

microbiology more details view paper
  • Downloaded 20,082 times
  • Download rankings, all-time:
    • Site-wide: 297
    • In microbiology: 33
  • Year to date:
    • Site-wide: 694
  • Since beginning of last month:
    • Site-wide: 1,409

A human coronavirus evolves antigenically to escape antibody immunity

microbiology more details view paper
  • Downloaded 9,497 times
  • Download rankings, all-time:
    • Site-wide: 729
    • In microbiology: 73
  • Year to date:
    • Site-wide: 71
  • Since beginning of last month:
    • Site-wide: 14

Cryptic transmission of SARS-CoV-2 in Washington State

epidemiology more details view paper
  • Downloaded 9,056 times
  • Download rankings, all-time:
    • Site-wide: 775
    • In epidemiology: 106
  • Year to date:
    • Site-wide: 3,610
  • Since beginning of last month:
    • Site-wide: 4,567

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

infectious diseases more details view paper
  • Downloaded 8,026 times
  • Download rankings, all-time:
    • Site-wide: 919
    • In infectious diseases: 252
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 4,116

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

genomics more details view paper
  • Downloaded 3,171 times
  • Download rankings, all-time:
    • Site-wide: 3,322
    • In genomics: 392
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 73,696

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

microbiology more details view paper
  • Downloaded 1,706 times
  • Download rankings, all-time:
    • Site-wide: 8,171
    • In microbiology: 448
  • Year to date:
    • Site-wide: 2,540
  • Since beginning of last month:
    • Site-wide: 1,725

Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories

pathology more details view paper
  • Downloaded 1,652 times
  • Download rankings, all-time:
    • Site-wide: 8,613
    • In pathology: 43
  • Year to date:
    • Site-wide: 34,406
  • Since beginning of last month:
    • Site-wide: 21,070

Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics

infectious diseases more details view paper
  • Downloaded 1,570 times
  • Download rankings, all-time:
    • Site-wide: 9,309
    • In infectious diseases: 1,033
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 47,712

Validation and Implementation of CLIA-Compliant Whole Genome Sequencing (WGS) in Public Health Laboratory

microbiology more details view paper
  • Downloaded 1,268 times
  • Download rankings, all-time:
    • Site-wide: 12,813
    • In microbiology: 714
  • Year to date:
    • Site-wide: 39,115
  • Since beginning of last month:
    • Site-wide: 33,267

Discovery of a persistent Zika virus lineage in Bahia, Brazil

epidemiology more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 14,664
    • In epidemiology: 894
  • Year to date:
    • Site-wide: 69,340
  • Since beginning of last month:
    • Site-wide: 59,041

Anti-SARS-CoV-2 IgG antibodies are associated with reduced viral load

infectious diseases more details view paper
  • Downloaded 1,021 times
  • Download rankings, all-time:
    • Site-wide: 17,718
    • In infectious diseases: 1,394
  • Year to date:
    • Site-wide: 56,312
  • Since beginning of last month:
    • Site-wide: 20,067

Retrospective Clinical Evaluation of Four Lateral Flow Assays for the Detection of SARS-CoV-2 Antibodies

infectious diseases more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 21,388
    • In infectious diseases: 1,499
  • Year to date:
    • Site-wide: 4,611
  • Since beginning of last month:
    • Site-wide: 3,823

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 24,477
    • In bioinformatics: 2,985
  • Year to date:
    • Site-wide: 24,134
  • Since beginning of last month:
    • Site-wide: 16,805

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the critical need for reference strain sequencing

genomics more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 25,697
    • In genomics: 2,464
  • Year to date:
    • Site-wide: 77,196
  • Since beginning of last month:
    • Site-wide: 56,543

SARS-CoV-2 ORF6 disrupts nucleocytoplasmic transport through interactions with Rae1 and Nup98

microbiology more details view paper
  • Downloaded 704 times
  • Download rankings, all-time:
    • Site-wide: 30,088
    • In microbiology: 1,778
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 28,210

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei With Increased Virulence or Fluoroquinolone Resistance

microbiology more details view paper
  • Downloaded 605 times
  • Download rankings, all-time:
    • Site-wide: 36,768
    • In microbiology: 2,226
  • Year to date:
    • Site-wide: 35,018
  • Since beginning of last month:
    • Site-wide: 54,665

Standard Issue: Copy number heterogeneity of JC virus standards discovered through next-generation sequencing

microbiology more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 37,787
    • In microbiology: 2,295
  • Year to date:
    • Site-wide: 71,773
  • Since beginning of last month:
    • Site-wide: 70,521

VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

bioinformatics more details view paper
  • Downloaded 546 times
  • Download rankings, all-time:
    • Site-wide: 41,788
    • In bioinformatics: 4,570
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 79,177

Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain

microbiology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 49,005
    • In microbiology: 3,121
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 102,763

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection

genomics more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 49,704
    • In genomics: 3,937
  • Year to date:
    • Site-wide: 74,010
  • Since beginning of last month:
    • Site-wide: 38,943

A novel qacA allele results in an elevated chlorhexidine gluconate minimum inhibitory concentration in cutaneous Staphylococcus epidermidis isolates

microbiology more details view paper
  • Downloaded 451 times
  • Download rankings, all-time:
    • Site-wide: 52,141
    • In microbiology: 3,386
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 47,174

Pre-Procedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population Shows Low Rates of Positivity

infectious diseases more details view paper
  • Downloaded 447 times
  • Download rankings, all-time:
    • Site-wide: 52,701
    • In infectious diseases: 2,331
  • Year to date:
    • Site-wide: 74,291
  • Since beginning of last month:
    • Site-wide: 101,730

The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition

genomics more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 55,803
    • In genomics: 4,245
  • Year to date:
    • Site-wide: 32,076
  • Since beginning of last month:
    • Site-wide: 67,498

Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections

microbiology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 63,815
    • In microbiology: 4,316
  • Year to date:
    • Site-wide: 52,894
  • Since beginning of last month:
    • Site-wide: 76,163

Cooperating H3N2 influenza virus variants are not detectable in primary clinical samples

microbiology more details view paper
  • Downloaded 361 times
  • Download rankings, all-time:
    • Site-wide: 65,031
    • In microbiology: 4,418
  • Year to date:
    • Site-wide: 52,600
  • Since beginning of last month:
    • Site-wide: 84,310

Limited marginal utility of deep sequencing for HIV drug resistance testing in the age of integrase inhibitors

epidemiology more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 66,059
    • In epidemiology: 2,717
  • Year to date:
    • Site-wide: 61,453
  • Since beginning of last month:
    • Site-wide: 85,999

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

genomics more details view paper
  • Downloaded 352 times
  • Download rankings, all-time:
    • Site-wide: 66,585
    • In genomics: 4,736
  • Year to date:
    • Site-wide: 79,769
  • Since beginning of last month:
    • Site-wide: 91,529

Divergent In vitro MIC Characteristics and underlying isogenic mutations in host-specialized Pseudomonas aeruginosa

microbiology more details view paper
  • Downloaded 292 times
  • Download rankings, all-time:
    • Site-wide: 77,320
    • In microbiology: 5,430
  • Year to date:
    • Site-wide: 43,535
  • Since beginning of last month:
    • Site-wide: 85,507

Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

genomics more details view paper
  • Downloaded 283 times
  • Download rankings, all-time:
    • Site-wide: 79,140
    • In genomics: 5,215
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 93,662

Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of small-colony variant Enterobactericeae

microbiology more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 85,784
    • In microbiology: 6,159
  • Year to date:
    • Site-wide: 35,864
  • Since beginning of last month:
    • Site-wide: 43,471

LAVA: a streamlined visualization tool for longitudinal analysis of viral alleles

bioinformatics more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 87,534
    • In bioinformatics: 7,857
  • Year to date:
    • Site-wide: 65,425
  • Since beginning of last month:
    • Site-wide: 76,565

Estimation of Full-Length TprK Diversity in Treponema pallidum subspecies pallidum

microbiology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 90,004
    • In microbiology: 6,546
  • Year to date:
    • Site-wide: 31,220
  • Since beginning of last month:
    • Site-wide: 59,623

Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters

genomics more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 91,501
    • In genomics: 5,657
  • Year to date:
    • Site-wide: 81,712
  • Since beginning of last month:
    • Site-wide: 111,593

Sensitive detection of highly fragmented cytomegalovirus nucleic acid in human cfDNA

microbiology more details view paper
  • Downloaded 220 times
  • Download rankings, all-time:
    • Site-wide: 92,112
    • In microbiology: 6,748
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 112,654

Inherited chromosomally integrated HHV-6 demonstrates tissue-specific RNA expression in vivo that correlates with increased antibody immune response.

genomics more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 92,688
    • In genomics: 5,682
  • Year to date:
    • Site-wide: 84,910
  • Since beginning of last month:
    • Site-wide: 106,954

Comparative Genomics and Full-Length TprK Profiling of Treponema pallidum subsp. pallidum Reinfection

microbiology more details view paper
  • Downloaded 172 times
  • Download rankings, all-time:
    • Site-wide: 102,119
    • In microbiology: 7,675
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 113,140

Phenotypic and Genotypic Antiviral Resistance Testing of HSV-1 Causing Recurrent Cutaneous Lesions in a Patient with DOCK8 Deficiency

genomics more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 106,763
    • In genomics: 6,126
  • Year to date:
    • Site-wide: 75,483
  • Since beginning of last month:
    • Site-wide: 62,677

Herpes Simplex Virus Mistyping due to HSV-1 x HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B

genomics more details view paper
  • Downloaded 122 times
  • Download rankings, all-time:
    • Site-wide: 111,287
    • In genomics: 6,275
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 116,537

Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus.

microbiology more details view paper
  • Downloaded 49 times
  • Download rankings, all-time:
    • Site-wide: 121,844
    • In microbiology: 9,540
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 57,318

Liver immune abnormalities persist after cure of Hepatitis C Virus by anti-viral therapy

infectious diseases more details view paper
  • Downloaded 33 times
  • Download rankings, all-time:
    • Site-wide: 122,557
    • In infectious diseases: 3,863
  • Year to date:
    • Site-wide: 44,634
  • Since beginning of last month:
    • Site-wide: 21,302

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