Author: Alexander L. Greninger
- ORCiD: http://orcid.org/0000-0002-7443-0527
- Most recently observed institution: Fred Hutchinson Cancer Research Institute
Rankings
- All-time downloads: 94,219 (rank: 1,162 )
- Categories:
- bioinformatics: 1,606 (rank: 8,263 (tie) )
- epidemiology: 10,569 (rank: 1,011 )
- genomics: 6,200 (rank: 3,222 (tie) )
- infectious diseases: 36,866 (rank: 1,046 )
- microbiology: 37,326 (rank: 252 )
- pathology: 1,652 (rank: 604 (tie) )
Downloads per author, site-wide
Preprints
Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate
infectious diseases more details view paper- Downloaded 24,871 times
- Download rankings, all-time:
- Site-wide: 228
- In infectious diseases: 88
- Year to date:
- Site-wide: 708
- Since beginning of last month:
- Site-wide: 629
DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP
microbiology more details view paper- Downloaded 20,082 times
- Download rankings, all-time:
- Site-wide: 297
- In microbiology: 33
- Year to date:
- Site-wide: 694
- Since beginning of last month:
- Site-wide: 1,409
A human coronavirus evolves antigenically to escape antibody immunity
microbiology more details view paper- Downloaded 9,497 times
- Download rankings, all-time:
- Site-wide: 729
- In microbiology: 73
- Year to date:
- Site-wide: 71
- Since beginning of last month:
- Site-wide: 14
Cryptic transmission of SARS-CoV-2 in Washington State
epidemiology more details view paper- Downloaded 9,056 times
- Download rankings, all-time:
- Site-wide: 775
- In epidemiology: 106
- Year to date:
- Site-wide: 3,610
- Since beginning of last month:
- Site-wide: 4,567
Point-of-care testing for COVID-19 using SHERLOCK diagnostics
infectious diseases more details view paper- Downloaded 8,026 times
- Download rankings, all-time:
- Site-wide: 919
- In infectious diseases: 252
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 4,116
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
genomics more details view paper- Downloaded 3,171 times
- Download rankings, all-time:
- Site-wide: 3,322
- In genomics: 392
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 73,696
In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age
microbiology more details view paper- Downloaded 1,706 times
- Download rankings, all-time:
- Site-wide: 8,171
- In microbiology: 448
- Year to date:
- Site-wide: 2,540
- Since beginning of last month:
- Site-wide: 1,725
Comparison of Commercially Available and Laboratory Developed Assays for in vitro Detection of SARS-CoV-2 in Clinical Laboratories
pathology more details view paper- Downloaded 1,652 times
- Download rankings, all-time:
- Site-wide: 8,613
- In pathology: 43
- Year to date:
- Site-wide: 34,406
- Since beginning of last month:
- Site-wide: 21,070
Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics
infectious diseases more details view paper- Downloaded 1,570 times
- Download rankings, all-time:
- Site-wide: 9,309
- In infectious diseases: 1,033
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 47,712
Validation and Implementation of CLIA-Compliant Whole Genome Sequencing (WGS) in Public Health Laboratory
microbiology more details view paper- Downloaded 1,268 times
- Download rankings, all-time:
- Site-wide: 12,813
- In microbiology: 714
- Year to date:
- Site-wide: 39,115
- Since beginning of last month:
- Site-wide: 33,267
Discovery of a persistent Zika virus lineage in Bahia, Brazil
epidemiology more details view paper- Downloaded 1,158 times
- Download rankings, all-time:
- Site-wide: 14,664
- In epidemiology: 894
- Year to date:
- Site-wide: 69,340
- Since beginning of last month:
- Site-wide: 59,041
Anti-SARS-CoV-2 IgG antibodies are associated with reduced viral load
infectious diseases more details view paper- Downloaded 1,021 times
- Download rankings, all-time:
- Site-wide: 17,718
- In infectious diseases: 1,394
- Year to date:
- Site-wide: 56,312
- Since beginning of last month:
- Site-wide: 20,067
Retrospective Clinical Evaluation of Four Lateral Flow Assays for the Detection of SARS-CoV-2 Antibodies
infectious diseases more details view paper- Downloaded 898 times
- Download rankings, all-time:
- Site-wide: 21,388
- In infectious diseases: 1,499
- Year to date:
- Site-wide: 4,611
- Since beginning of last month:
- Site-wide: 3,823
In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19
bioinformatics more details view paper- Downloaded 818 times
- Download rankings, all-time:
- Site-wide: 24,477
- In bioinformatics: 2,985
- Year to date:
- Site-wide: 24,134
- Since beginning of last month:
- Site-wide: 16,805
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the critical need for reference strain sequencing
genomics more details view paper- Downloaded 789 times
- Download rankings, all-time:
- Site-wide: 25,697
- In genomics: 2,464
- Year to date:
- Site-wide: 77,196
- Since beginning of last month:
- Site-wide: 56,543
SARS-CoV-2 ORF6 disrupts nucleocytoplasmic transport through interactions with Rae1 and Nup98
microbiology more details view paper- Downloaded 704 times
- Download rankings, all-time:
- Site-wide: 30,088
- In microbiology: 1,778
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 28,210
Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei With Increased Virulence or Fluoroquinolone Resistance
microbiology more details view paper- Downloaded 605 times
- Download rankings, all-time:
- Site-wide: 36,768
- In microbiology: 2,226
- Year to date:
- Site-wide: 35,018
- Since beginning of last month:
- Site-wide: 54,665
Standard Issue: Copy number heterogeneity of JC virus standards discovered through next-generation sequencing
microbiology more details view paper- Downloaded 592 times
- Download rankings, all-time:
- Site-wide: 37,787
- In microbiology: 2,295
- Year to date:
- Site-wide: 71,773
- Since beginning of last month:
- Site-wide: 70,521
VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank
bioinformatics more details view paper- Downloaded 546 times
- Download rankings, all-time:
- Site-wide: 41,788
- In bioinformatics: 4,570
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 79,177
Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain
microbiology more details view paper- Downloaded 477 times
- Download rankings, all-time:
- Site-wide: 49,005
- In microbiology: 3,121
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 102,763
Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection
genomics more details view paper- Downloaded 471 times
- Download rankings, all-time:
- Site-wide: 49,704
- In genomics: 3,937
- Year to date:
- Site-wide: 74,010
- Since beginning of last month:
- Site-wide: 38,943
A novel qacA allele results in an elevated chlorhexidine gluconate minimum inhibitory concentration in cutaneous Staphylococcus epidermidis isolates
microbiology more details view paper- Downloaded 451 times
- Download rankings, all-time:
- Site-wide: 52,141
- In microbiology: 3,386
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 47,174
Pre-Procedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population Shows Low Rates of Positivity
infectious diseases more details view paper- Downloaded 447 times
- Download rankings, all-time:
- Site-wide: 52,701
- In infectious diseases: 2,331
- Year to date:
- Site-wide: 74,291
- Since beginning of last month:
- Site-wide: 101,730
The impact of interspecies recombination on human herpes simplex virus evolution and host immune recognition
genomics more details view paper- Downloaded 423 times
- Download rankings, all-time:
- Site-wide: 55,803
- In genomics: 4,245
- Year to date:
- Site-wide: 32,076
- Since beginning of last month:
- Site-wide: 67,498
Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections
microbiology more details view paper- Downloaded 369 times
- Download rankings, all-time:
- Site-wide: 63,815
- In microbiology: 4,316
- Year to date:
- Site-wide: 52,894
- Since beginning of last month:
- Site-wide: 76,163
Cooperating H3N2 influenza virus variants are not detectable in primary clinical samples
microbiology more details view paper- Downloaded 361 times
- Download rankings, all-time:
- Site-wide: 65,031
- In microbiology: 4,418
- Year to date:
- Site-wide: 52,600
- Since beginning of last month:
- Site-wide: 84,310
Limited marginal utility of deep sequencing for HIV drug resistance testing in the age of integrase inhibitors
epidemiology more details view paper- Downloaded 355 times
- Download rankings, all-time:
- Site-wide: 66,059
- In epidemiology: 2,717
- Year to date:
- Site-wide: 61,453
- Since beginning of last month:
- Site-wide: 85,999
Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture
genomics more details view paper- Downloaded 352 times
- Download rankings, all-time:
- Site-wide: 66,585
- In genomics: 4,736
- Year to date:
- Site-wide: 79,769
- Since beginning of last month:
- Site-wide: 91,529
Divergent In vitro MIC Characteristics and underlying isogenic mutations in host-specialized Pseudomonas aeruginosa
microbiology more details view paper- Downloaded 292 times
- Download rankings, all-time:
- Site-wide: 77,320
- In microbiology: 5,430
- Year to date:
- Site-wide: 43,535
- Since beginning of last month:
- Site-wide: 85,507
Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains
genomics more details view paper- Downloaded 283 times
- Download rankings, all-time:
- Site-wide: 79,140
- In genomics: 5,215
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 93,662
Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of small-colony variant Enterobactericeae
microbiology more details view paper- Downloaded 251 times
- Download rankings, all-time:
- Site-wide: 85,784
- In microbiology: 6,159
- Year to date:
- Site-wide: 35,864
- Since beginning of last month:
- Site-wide: 43,471
LAVA: a streamlined visualization tool for longitudinal analysis of viral alleles
bioinformatics more details view paper- Downloaded 242 times
- Download rankings, all-time:
- Site-wide: 87,534
- In bioinformatics: 7,857
- Year to date:
- Site-wide: 65,425
- Since beginning of last month:
- Site-wide: 76,565
Estimation of Full-Length TprK Diversity in Treponema pallidum subspecies pallidum
microbiology more details view paper- Downloaded 230 times
- Download rankings, all-time:
- Site-wide: 90,004
- In microbiology: 6,546
- Year to date:
- Site-wide: 31,220
- Since beginning of last month:
- Site-wide: 59,623
Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters
genomics more details view paper- Downloaded 223 times
- Download rankings, all-time:
- Site-wide: 91,501
- In genomics: 5,657
- Year to date:
- Site-wide: 81,712
- Since beginning of last month:
- Site-wide: 111,593
Sensitive detection of highly fragmented cytomegalovirus nucleic acid in human cfDNA
microbiology more details view paper- Downloaded 220 times
- Download rankings, all-time:
- Site-wide: 92,112
- In microbiology: 6,748
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 112,654
Inherited chromosomally integrated HHV-6 demonstrates tissue-specific RNA expression in vivo that correlates with increased antibody immune response.
genomics more details view paper- Downloaded 218 times
- Download rankings, all-time:
- Site-wide: 92,688
- In genomics: 5,682
- Year to date:
- Site-wide: 84,910
- Since beginning of last month:
- Site-wide: 106,954
Comparative Genomics and Full-Length TprK Profiling of Treponema pallidum subsp. pallidum Reinfection
microbiology more details view paper- Downloaded 172 times
- Download rankings, all-time:
- Site-wide: 102,119
- In microbiology: 7,675
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 113,140
Phenotypic and Genotypic Antiviral Resistance Testing of HSV-1 Causing Recurrent Cutaneous Lesions in a Patient with DOCK8 Deficiency
genomics more details view paper- Downloaded 148 times
- Download rankings, all-time:
- Site-wide: 106,763
- In genomics: 6,126
- Year to date:
- Site-wide: 75,483
- Since beginning of last month:
- Site-wide: 62,677
Herpes Simplex Virus Mistyping due to HSV-1 x HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B
genomics more details view paper- Downloaded 122 times
- Download rankings, all-time:
- Site-wide: 111,287
- In genomics: 6,275
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 116,537
Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus.
microbiology more details view paper- Downloaded 49 times
- Download rankings, all-time:
- Site-wide: 121,844
- In microbiology: 9,540
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 57,318
Liver immune abnormalities persist after cure of Hepatitis C Virus by anti-viral therapy
infectious diseases more details view paper- Downloaded 33 times
- Download rankings, all-time:
- Site-wide: 122,557
- In infectious diseases: 3,863
- Year to date:
- Site-wide: 44,634
- Since beginning of last month:
- Site-wide: 21,302
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