Rxivist logo

Author: Stephen F. Schaffner

  • ORCiD: http://orcid.org/0000-0001-6699-3568
  • Most recently observed institution: Broad Institute of Harvard and MIT, Cambridge, MA, USA; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Harvard Univers

Rankings

  • All-time downloads: 27,260 (rank: 8,703 )
  • Categories:
    • bioinformatics: 1,277 (rank: 14,664 (tie) )
    • epidemiology: 8,540 (rank: 2,305 )
    • genetics: 660 (rank: 25,169 (tie) )
    • genomics: 3,633 (rank: 7,965 )
    • infectious diseases: 4,997 (rank: 11,347 (tie) )
    • microbiology: 6,916 (rank: 2,708 )
    • pathology: 1,237 (rank: 1,308 (tie) )

Downloads per author, site-wide

Preprints

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

microbiology more details view paper
  • Downloaded 5,936 times
  • Download rankings, all-time:
    • Site-wide: 2,269
    • In microbiology: 180
  • Year to date:
    • Site-wide: 24,833
  • Since beginning of last month:
    • Site-wide: 12,739

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

infectious diseases more details view paper
  • Downloaded 4,997 times
  • Download rankings, all-time:
    • Site-wide: 2,859
    • In infectious diseases: 718
  • Year to date:
    • Site-wide: 2,400
  • Since beginning of last month:
    • Site-wide: 227

Analysis of 2.1 million SARS-CoV-2 genomes identifies mutations associated with transmissibility

epidemiology more details view paper
  • Downloaded 4,172 times
  • Download rankings, all-time:
    • Site-wide: 3,635
    • In epidemiology: 389
  • Year to date:
    • Site-wide: 1,838
  • Since beginning of last month:
    • Site-wide: 633

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,566 times
  • Download rankings, all-time:
    • Site-wide: 7,286
    • In epidemiology: 628
  • Year to date:
    • Site-wide: 112,232
  • Since beginning of last month:
    • Site-wide: 59,739

Genome sequencing reveals Zika virus diversity and spread in the Americas

genomics more details view paper
  • Downloaded 2,523 times
  • Download rankings, all-time:
    • Site-wide: 7,458
    • In genomics: 747
  • Year to date:
    • Site-wide: 107,846
  • Since beginning of last month:
    • Site-wide: 119,647

Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

epidemiology more details view paper
  • Downloaded 1,802 times
  • Download rankings, all-time:
    • Site-wide: 12,247
    • In epidemiology: 930
  • Year to date:
    • Site-wide: 124,324
  • Since beginning of last month:
    • Site-wide: 83,046

hmmIBD: software to infer pairwise identity by descent between haploid genotypes

bioinformatics more details view paper
  • Downloaded 1,277 times
  • Download rankings, all-time:
    • Site-wide: 20,619
    • In bioinformatics: 2,293
  • Year to date:
    • Site-wide: 123,223
  • Since beginning of last month:
    • Site-wide: 153,144

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

pathology more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 21,641
    • In pathology: 98
  • Year to date:
    • Site-wide: 13,535
  • Since beginning of last month:
    • Site-wide: 13,973

Reporter assays for Ebola virus nucleoprotein oligomerization, virion-like particle budding, and minigenome activity reveal the importance of nucleoprotein amino acid position 111

microbiology more details view paper
  • Downloaded 980 times
  • Download rankings, all-time:
    • Site-wide: 30,772
    • In microbiology: 1,783
  • Year to date:
    • Site-wide: 153,073
  • Since beginning of last month:
    • Site-wide: 95,429

Co-circulating mumps lineages at multiple geographic scales

genomics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 37,480
    • In genomics: 3,040
  • Year to date:
    • Site-wide: 120,741
  • Since beginning of last month:
    • Site-wide: 99,951

Cosi2 : An efficient simulator of exact and approximate coalescent with selection

genetics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 54,156
    • In genetics: 2,276
  • Year to date:
    • Site-wide: 115,610
  • Since beginning of last month:
    • Site-wide: 123,790

Biomarkers to distinguish bacterial from viral pediatric clinical pneumonia in a malaria endemic setting

genomics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 134,100
    • In genomics: 7,209
  • Year to date:
    • Site-wide: 132,595
  • Since beginning of last month:
    • Site-wide: 138,587

PanLingua

News