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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,850 bioRxiv papers from 321,349 authors.

Author: Sohrab P. Shah

Rankings

  • All-time downloads: 22,847 (rank: 1,311 out of 321,349)
  • Categories:
    • bioinformatics: 9,085 (rank: 437 (tie) out of 27,848)
    • cancer biology: 4,346 (rank: 313 out of 21,229)
    • genomics: 9,416 (rank: 1,286 out of 35,808)

Downloads per author, site-wide

Preprints

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

genomics more details view paper
  • Downloaded 4,205 times
  • Download rankings, all-time:
    • Site-wide: 710 out of 73,850
    • In genomics: 172 out of 4,892
  • Year to date:
    • Site-wide: 4,538 out of 73,850
  • Since beginning of last month:
    • Site-wide: 4,538 out of 73,850

Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase associated stress responses

genomics more details view paper
  • Downloaded 3,859 times
  • Download rankings, all-time:
    • Site-wide: 834 out of 73,850
    • In genomics: 205 out of 4,892
  • Year to date:
    • Site-wide: 10,972 out of 73,850
  • Since beginning of last month:
    • Site-wide: 10,972 out of 73,850

Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers

bioinformatics more details view paper
  • Downloaded 3,828 times
  • Download rankings, all-time:
    • Site-wide: 847 out of 73,850
    • In bioinformatics: 166 out of 7,182
  • Year to date:
    • Site-wide: 3,916 out of 73,850
  • Since beginning of last month:
    • Site-wide: 3,916 out of 73,850

Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

bioinformatics more details view paper
  • Downloaded 1,794 times
  • Download rankings, all-time:
    • Site-wide: 3,288 out of 73,850
    • In bioinformatics: 644 out of 7,182
  • Year to date:
    • Site-wide: 43,297 out of 73,850
  • Since beginning of last month:
    • Site-wide: 43,297 out of 73,850

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

bioinformatics more details view paper
  • Downloaded 1,664 times
  • Download rankings, all-time:
    • Site-wide: 3,743 out of 73,850
    • In bioinformatics: 733 out of 7,182
  • Year to date:
    • Site-wide: 27,960 out of 73,850
  • Since beginning of last month:
    • Site-wide: 27,960 out of 73,850

The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer

cancer biology more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 4,514 out of 73,850
    • In cancer biology: 113 out of 2,531
  • Year to date:
    • Site-wide: 56,500 out of 73,850
  • Since beginning of last month:
    • Site-wide: 56,500 out of 73,850

Integrated single-nucleotide and structural variation signatures of DNA-repair deficient human cancers

cancer biology more details view paper
  • Downloaded 1,308 times
  • Download rankings, all-time:
    • Site-wide: 5,609 out of 73,850
    • In cancer biology: 149 out of 2,531
  • Year to date:
    • Site-wide: 36,169 out of 73,850
  • Since beginning of last month:
    • Site-wide: 36,169 out of 73,850

Kronos: a workflow assembler for genome analytics and informatics

bioinformatics more details view paper
  • Downloaded 1,261 times
  • Download rankings, all-time:
    • Site-wide: 5,974 out of 73,850
    • In bioinformatics: 1,135 out of 7,182
  • Year to date:
    • Site-wide: 40,367 out of 73,850
  • Since beginning of last month:
    • Site-wide: 40,367 out of 73,850

E-scape: Interactive visualization of single cell phylogenetics and spatio-temporal evolution in cancer

cancer biology more details view paper
  • Downloaded 928 times
  • Download rankings, all-time:
    • Site-wide: 9,921 out of 73,850
    • In cancer biology: 295 out of 2,531
  • Year to date:
    • Site-wide: 45,066 out of 73,850
  • Since beginning of last month:
    • Site-wide: 45,066 out of 73,850

Epiclomal: probabilistic clustering of sparse single-cell DNA methylation data

genomics more details view paper
  • Downloaded 903 times
  • Download rankings, all-time:
    • Site-wide: 10,362 out of 73,850
    • In genomics: 1,526 out of 4,892
  • Year to date:
    • Site-wide: 7,127 out of 73,850
  • Since beginning of last month:
    • Site-wide: 7,127 out of 73,850

Non-coding Somatic Mutations Converge on the PAX8 Pathway in Epithelial Ovarian Cancer

cancer biology more details view paper
  • Downloaded 619 times
  • Download rankings, all-time:
    • Site-wide: 18,140 out of 73,850
    • In cancer biology: 550 out of 2,531
  • Year to date:
    • Site-wide: 17,622 out of 73,850
  • Since beginning of last month:
    • Site-wide: 17,622 out of 73,850

MuClone: Somatic mutation detection and classification through probabilistic integration of clonal population structure

bioinformatics more details view paper
  • Downloaded 538 times
  • Download rankings, all-time:
    • Site-wide: 21,951 out of 73,850
    • In bioinformatics: 3,145 out of 7,182
  • Year to date:
    • Site-wide: 49,271 out of 73,850
  • Since beginning of last month:
    • Site-wide: 49,271 out of 73,850

Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

genomics more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 27,460 out of 73,850
    • In genomics: 2,851 out of 4,892
  • Year to date:
    • Site-wide: 52,313 out of 73,850
  • Since beginning of last month:
    • Site-wide: 52,313 out of 73,850

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