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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,747 bioRxiv papers from 278,434 authors.

Author: Rob Patro

Rankings

  • All-time downloads: 51,777 (rank: 252 out of 278,434)
  • Categories:
    • bioinformatics: 49,626 (rank: 40 out of 24,395)
    • genetics: 2,151 (rank: 5,660 (tie) out of 27,725)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,706 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 62,747
    • In bioinformatics: 3 out of 6,251
  • Year to date:
    • Site-wide: 224 out of 62,747
  • Since beginning of last month:
    • Site-wide: 192 out of 62,747

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 10,371 times
  • Download rankings, all-time:
    • Site-wide: 98 out of 62,747
    • In bioinformatics: 18 out of 6,251
  • Year to date:
    • Site-wide: 380 out of 62,747
  • Since beginning of last month:
    • Site-wide: 266 out of 62,747

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,569 times
  • Download rankings, all-time:
    • Site-wide: 475 out of 62,747
    • In bioinformatics: 95 out of 6,251
  • Year to date:
    • Site-wide: 2,582 out of 62,747
  • Since beginning of last month:
    • Site-wide: 6,068 out of 62,747

Mantis: A Fast, Small, and Exact Large-Scale Sequence Search Index

bioinformatics more details view paper
  • Downloaded 2,373 times
  • Download rankings, all-time:
    • Site-wide: 1,648 out of 62,747
    • In bioinformatics: 331 out of 6,251
  • Year to date:
    • Site-wide: 6,026 out of 62,747
  • Since beginning of last month:
    • Site-wide: 16,746 out of 62,747

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,205 times
  • Download rankings, all-time:
    • Site-wide: 1,866 out of 62,747
    • In bioinformatics: 382 out of 6,251
  • Year to date:
    • Site-wide: 1,540 out of 62,747
  • Since beginning of last month:
    • Site-wide: 4,376 out of 62,747

Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

genetics more details view paper
  • Downloaded 2,151 times
  • Download rankings, all-time:
    • Site-wide: 1,963 out of 62,747
    • In genetics: 189 out of 3,562
  • Year to date:
    • Site-wide: 10,391 out of 62,747
  • Since beginning of last month:
    • Site-wide: 13,850 out of 62,747

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 1,564 times
  • Download rankings, all-time:
    • Site-wide: 3,383 out of 62,747
    • In bioinformatics: 683 out of 6,251
  • Year to date:
    • Site-wide: 641 out of 62,747
  • Since beginning of last month:
    • Site-wide: 894 out of 62,747

Squeakr: An Exact and Approximate k-mer Counting System

bioinformatics more details view paper
  • Downloaded 1,486 times
  • Download rankings, all-time:
    • Site-wide: 3,691 out of 62,747
    • In bioinformatics: 743 out of 6,251
  • Year to date:
    • Site-wide: 18,108 out of 62,747
  • Since beginning of last month:
    • Site-wide: 32,191 out of 62,747

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,164 times
  • Download rankings, all-time:
    • Site-wide: 5,515 out of 62,747
    • In bioinformatics: 1,069 out of 6,251
  • Year to date:
    • Site-wide: 18,635 out of 62,747
  • Since beginning of last month:
    • Site-wide: 40,492 out of 62,747

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 6,077 out of 62,747
    • In bioinformatics: 1,145 out of 6,251
  • Year to date:
    • Site-wide: 1,253 out of 62,747
  • Since beginning of last month:
    • Site-wide: 4,541 out of 62,747

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

bioinformatics more details view paper
  • Downloaded 1,050 times
  • Download rankings, all-time:
    • Site-wide: 6,555 out of 62,747
    • In bioinformatics: 1,214 out of 6,251
  • Year to date:
    • Site-wide: 45,863 out of 62,747
  • Since beginning of last month:
    • Site-wide: 45,985 out of 62,747

Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes

bioinformatics more details view paper
  • Downloaded 885 times
  • Download rankings, all-time:
    • Site-wide: 8,608 out of 62,747
    • In bioinformatics: 1,515 out of 6,251
  • Year to date:
    • Site-wide: 52,563 out of 62,747
  • Since beginning of last month:
    • Site-wide: 54,130 out of 62,747

Rich chromatin structure prediction from Hi-C data

bioinformatics more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 8,823 out of 62,747
    • In bioinformatics: 1,547 out of 6,251
  • Year to date:
    • Site-wide: 45,684 out of 62,747
  • Since beginning of last month:
    • Site-wide: 46,186 out of 62,747

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 9,895 out of 62,747
    • In bioinformatics: 1,709 out of 6,251
  • Year to date:
    • Site-wide: 32,086 out of 62,747
  • Since beginning of last month:
    • Site-wide: 44,806 out of 62,747

Compression of short-read sequences using path encoding

bioinformatics more details view paper
  • Downloaded 632 times
  • Download rankings, all-time:
    • Site-wide: 14,053 out of 62,747
    • In bioinformatics: 2,257 out of 6,251
  • Year to date:
    • Site-wide: 58,375 out of 62,747
  • Since beginning of last month:
    • Site-wide: 53,827 out of 62,747

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

bioinformatics more details view paper
  • Downloaded 589 times
  • Download rankings, all-time:
    • Site-wide: 15,525 out of 62,747
    • In bioinformatics: 2,442 out of 6,251
  • Year to date:
    • Site-wide: 11,630 out of 62,747
  • Since beginning of last month:
    • Site-wide: 10,674 out of 62,747

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 569 times
  • Download rankings, all-time:
    • Site-wide: 16,233 out of 62,747
    • In bioinformatics: 2,526 out of 6,251
  • Year to date:
    • Site-wide: 57,766 out of 62,747
  • Since beginning of last month:
    • Site-wide: 52,261 out of 62,747

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 22,964 out of 62,747
    • In bioinformatics: 3,269 out of 6,251
  • Year to date:
    • Site-wide: 32,542 out of 62,747
  • Since beginning of last month:
    • Site-wide: 44,365 out of 62,747

Tximeta: reference sequence checksums for provenance identification in RNA-seq

bioinformatics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 37,678 out of 62,747
    • In bioinformatics: 4,553 out of 6,251
  • Year to date:
    • Site-wide: 14,462 out of 62,747
  • Since beginning of last month:
    • Site-wide: 702 out of 62,747

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