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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,506 bioRxiv papers from 243,425 authors.

Author: Rob Patro

Rankings

  • All-time downloads: 46,581 (rank: 255 out of 243,425)
  • Categories:
    • bioinformatics: 44,562 (rank: 42 out of 21,556)
    • genetics: 2,019 (rank: 4,488 (tie) out of 23,659)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 17,320 times
  • Download rankings, all-time:
    • Site-wide: 31 out of 52,506
    • In bioinformatics: 4 out of 5,498
  • Year to date:
    • Site-wide: 399 out of 52,506
  • Since beginning of last month:
    • Site-wide: 485 out of 52,506

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 9,215 times
  • Download rankings, all-time:
    • Site-wide: 107 out of 52,506
    • In bioinformatics: 22 out of 5,498
  • Year to date:
    • Site-wide: 795 out of 52,506
  • Since beginning of last month:
    • Site-wide: 834 out of 52,506

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,334 times
  • Download rankings, all-time:
    • Site-wide: 435 out of 52,506
    • In bioinformatics: 90 out of 5,498
  • Year to date:
    • Site-wide: 2,352 out of 52,506
  • Since beginning of last month:
    • Site-wide: 3,085 out of 52,506

Mantis: A Fast, Small, and Exact Large-Scale Sequence Search Index

bioinformatics more details view paper
  • Downloaded 2,228 times
  • Download rankings, all-time:
    • Site-wide: 1,536 out of 52,506
    • In bioinformatics: 316 out of 5,498
  • Year to date:
    • Site-wide: 5,255 out of 52,506
  • Since beginning of last month:
    • Site-wide: 5,820 out of 52,506

Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

genetics more details view paper
  • Downloaded 2,019 times
  • Download rankings, all-time:
    • Site-wide: 1,817 out of 52,506
    • In genetics: 178 out of 3,067
  • Year to date:
    • Site-wide: 10,772 out of 52,506
  • Since beginning of last month:
    • Site-wide: 10,521 out of 52,506

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 1,986 times
  • Download rankings, all-time:
    • Site-wide: 1,870 out of 52,506
    • In bioinformatics: 395 out of 5,498
  • Year to date:
    • Site-wide: 1,100 out of 52,506
  • Since beginning of last month:
    • Site-wide: 3,914 out of 52,506

Squeakr: An Exact and Approximate k-mer Counting System

bioinformatics more details view paper
  • Downloaded 1,387 times
  • Download rankings, all-time:
    • Site-wide: 3,397 out of 52,506
    • In bioinformatics: 681 out of 5,498
  • Year to date:
    • Site-wide: 18,678 out of 52,506
  • Since beginning of last month:
    • Site-wide: 20,492 out of 52,506

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,068 times
  • Download rankings, all-time:
    • Site-wide: 5,161 out of 52,506
    • In bioinformatics: 1,011 out of 5,498
  • Year to date:
    • Site-wide: 19,062 out of 52,506
  • Since beginning of last month:
    • Site-wide: 17,668 out of 52,506

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

bioinformatics more details view paper
  • Downloaded 1,022 times
  • Download rankings, all-time:
    • Site-wide: 5,543 out of 52,506
    • In bioinformatics: 1,063 out of 5,498
  • Year to date:
    • Site-wide: 34,807 out of 52,506
  • Since beginning of last month:
    • Site-wide: 44,512 out of 52,506

Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes

bioinformatics more details view paper
  • Downloaded 855 times
  • Download rankings, all-time:
    • Site-wide: 7,340 out of 52,506
    • In bioinformatics: 1,327 out of 5,498
  • Year to date:
    • Site-wide: 43,138 out of 52,506
  • Since beginning of last month:
    • Site-wide: 33,840 out of 52,506

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 842 times
  • Download rankings, all-time:
    • Site-wide: 7,507 out of 52,506
    • In bioinformatics: 1,356 out of 5,498
  • Year to date:
    • Site-wide: 892 out of 52,506
  • Since beginning of last month:
    • Site-wide: 96 out of 52,506

Rich chromatin structure prediction from Hi-C data

bioinformatics more details view paper
  • Downloaded 832 times
  • Download rankings, all-time:
    • Site-wide: 7,656 out of 52,506
    • In bioinformatics: 1,384 out of 5,498
  • Year to date:
    • Site-wide: 38,553 out of 52,506
  • Since beginning of last month:
    • Site-wide: 44,328 out of 52,506

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 776 times
  • Download rankings, all-time:
    • Site-wide: 8,534 out of 52,506
    • In bioinformatics: 1,530 out of 5,498
  • Year to date:
    • Site-wide: 22,272 out of 52,506
  • Since beginning of last month:
    • Site-wide: 28,023 out of 52,506

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 10,703 out of 52,506
    • In bioinformatics: 1,834 out of 5,498
  • Year to date:
    • Site-wide: 1,384 out of 52,506
  • Since beginning of last month:
    • Site-wide: 1,583 out of 52,506

Compression of short-read sequences using path encoding

bioinformatics more details view paper
  • Downloaded 612 times
  • Download rankings, all-time:
    • Site-wide: 11,868 out of 52,506
    • In bioinformatics: 1,977 out of 5,498
  • Year to date:
    • Site-wide: 46,060 out of 52,506
  • Since beginning of last month:
    • Site-wide: 41,151 out of 52,506

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 13,811 out of 52,506
    • In bioinformatics: 2,241 out of 5,498
  • Year to date:
    • Site-wide: 47,198 out of 52,506
  • Since beginning of last month:
    • Site-wide: 49,441 out of 52,506

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

bioinformatics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 15,753 out of 52,506
    • In bioinformatics: 2,466 out of 5,498
  • Year to date:
    • Site-wide: 9,681 out of 52,506
  • Since beginning of last month:
    • Site-wide: 8,930 out of 52,506

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 20,657 out of 52,506
    • In bioinformatics: 2,996 out of 5,498
  • Year to date:
    • Site-wide: 25,397 out of 52,506
  • Since beginning of last month:
    • Site-wide: 21,504 out of 52,506

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