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Author: Rob Patro

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  • All-time downloads: 28,699 (rank: 1,434 out of 364,450)
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    • bioinformatics: 26,275 (rank: 84 out of 31,505)
    • genetics: 2,424 (rank: 6,087 (tie) out of 34,141)

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Preprints

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

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Alignment and mapping methodology influence transcript abundance estimation

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Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

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Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

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Nonparametric expression analysis using inferential replicate counts

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Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

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Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes

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Rich chromatin structure prediction from Hi-C data

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An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

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Compression of short-read sequences using path encoding

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Tximeta: reference sequence checksums for provenance identification in RNA-seq

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Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

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A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

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