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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,915 bioRxiv papers from 266,490 authors.

Author: Rob Patro

Rankings

  • All-time downloads: 49,439 (rank: 255 out of 266,490)
  • Categories:
    • bioinformatics: 47,330 (rank: 41 out of 23,182)
    • genetics: 2,109 (rank: 4,738 (tie) out of 25,354)

Downloads per author, site-wide

Preprints

Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference

bioinformatics more details view paper
  • Downloaded 18,031 times
  • Download rankings, all-time:
    • Site-wide: 33 out of 57,915
    • In bioinformatics: 3 out of 5,899
  • Year to date:
    • Site-wide: 289 out of 57,915
  • Since beginning of last month:
    • Site-wide: 277 out of 57,915

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 9,813 times
  • Download rankings, all-time:
    • Site-wide: 104 out of 57,915
    • In bioinformatics: 20 out of 5,899
  • Year to date:
    • Site-wide: 505 out of 57,915
  • Since beginning of last month:
    • Site-wide: 392 out of 57,915

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,476 times
  • Download rankings, all-time:
    • Site-wide: 450 out of 57,915
    • In bioinformatics: 91 out of 5,899
  • Year to date:
    • Site-wide: 2,456 out of 57,915
  • Since beginning of last month:
    • Site-wide: 5,406 out of 57,915

Mantis: A Fast, Small, and Exact Large-Scale Sequence Search Index

bioinformatics more details view paper
  • Downloaded 2,330 times
  • Download rankings, all-time:
    • Site-wide: 1,588 out of 57,915
    • In bioinformatics: 315 out of 5,899
  • Year to date:
    • Site-wide: 5,364 out of 57,915
  • Since beginning of last month:
    • Site-wide: 6,945 out of 57,915

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

bioinformatics more details view paper
  • Downloaded 2,109 times
  • Download rankings, all-time:
    • Site-wide: 1,886 out of 57,915
    • In bioinformatics: 386 out of 5,899
  • Year to date:
    • Site-wide: 1,390 out of 57,915
  • Since beginning of last month:
    • Site-wide: 5,622 out of 57,915

Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

genetics more details view paper
  • Downloaded 2,109 times
  • Download rankings, all-time:
    • Site-wide: 1,884 out of 57,915
    • In genetics: 183 out of 3,319
  • Year to date:
    • Site-wide: 9,770 out of 57,915
  • Since beginning of last month:
    • Site-wide: 6,714 out of 57,915

Squeakr: An Exact and Approximate k-mer Counting System

bioinformatics more details view paper
  • Downloaded 1,442 times
  • Download rankings, all-time:
    • Site-wide: 3,598 out of 57,915
    • In bioinformatics: 721 out of 5,899
  • Year to date:
    • Site-wide: 18,740 out of 57,915
  • Since beginning of last month:
    • Site-wide: 15,245 out of 57,915

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 1,298 times
  • Download rankings, all-time:
    • Site-wide: 4,276 out of 57,915
    • In bioinformatics: 854 out of 5,899
  • Year to date:
    • Site-wide: 664 out of 57,915
  • Since beginning of last month:
    • Site-wide: 680 out of 57,915

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,143 times
  • Download rankings, all-time:
    • Site-wide: 5,232 out of 57,915
    • In bioinformatics: 1,010 out of 5,899
  • Year to date:
    • Site-wide: 16,549 out of 57,915
  • Since beginning of last month:
    • Site-wide: 12,821 out of 57,915

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

bioinformatics more details view paper
  • Downloaded 1,041 times
  • Download rankings, all-time:
    • Site-wide: 6,134 out of 57,915
    • In bioinformatics: 1,147 out of 5,899
  • Year to date:
    • Site-wide: 41,349 out of 57,915
  • Since beginning of last month:
    • Site-wide: 47,783 out of 57,915

Nonparametric expression analysis using inferential replicate counts

bioinformatics more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 6,807 out of 57,915
    • In bioinformatics: 1,241 out of 5,899
  • Year to date:
    • Site-wide: 1,169 out of 57,915
  • Since beginning of last month:
    • Site-wide: 981 out of 57,915

Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes

bioinformatics more details view paper
  • Downloaded 876 times
  • Download rankings, all-time:
    • Site-wide: 8,055 out of 57,915
    • In bioinformatics: 1,435 out of 5,899
  • Year to date:
    • Site-wide: 48,346 out of 57,915
  • Since beginning of last month:
    • Site-wide: 45,893 out of 57,915

Rich chromatin structure prediction from Hi-C data

bioinformatics more details view paper
  • Downloaded 858 times
  • Download rankings, all-time:
    • Site-wide: 8,325 out of 57,915
    • In bioinformatics: 1,475 out of 5,899
  • Year to date:
    • Site-wide: 42,201 out of 57,915
  • Since beginning of last month:
    • Site-wide: 37,847 out of 57,915

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 797 times
  • Download rankings, all-time:
    • Site-wide: 9,356 out of 57,915
    • In bioinformatics: 1,638 out of 5,899
  • Year to date:
    • Site-wide: 28,106 out of 57,915
  • Since beginning of last month:
    • Site-wide: 45,895 out of 57,915

Compression of short-read sequences using path encoding

bioinformatics more details view paper
  • Downloaded 624 times
  • Download rankings, all-time:
    • Site-wide: 13,173 out of 57,915
    • In bioinformatics: 2,140 out of 5,899
  • Year to date:
    • Site-wide: 53,990 out of 57,915
  • Since beginning of last month:
    • Site-wide: 53,849 out of 57,915

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 15,252 out of 57,915
    • In bioinformatics: 2,411 out of 5,899
  • Year to date:
    • Site-wide: 53,109 out of 57,915
  • Since beginning of last month:
    • Site-wide: 52,663 out of 57,915

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

bioinformatics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 16,073 out of 57,915
    • In bioinformatics: 2,517 out of 5,899
  • Year to date:
    • Site-wide: 11,650 out of 57,915
  • Since beginning of last month:
    • Site-wide: 18,811 out of 57,915

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 21,874 out of 57,915
    • In bioinformatics: 3,151 out of 5,899
  • Year to date:
    • Site-wide: 29,029 out of 57,915
  • Since beginning of last month:
    • Site-wide: 32,620 out of 57,915

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