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Author: Hirak Sarkar

Rankings

  • All-time downloads: 20,009 (rank: 2,459 out of 360,281)
  • Categories:
    • bioinformatics: 20,009 (rank: 119 out of 31,168)

Downloads per author, site-wide

Preprints

RapMap: A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes

bioinformatics more details view paper
  • Downloaded 12,552 times
  • Download rankings, all-time:
    • Site-wide: 141 out of 83,615
    • In bioinformatics: 19 out of 8,013
  • Year to date:
    • Site-wide: 588 out of 83,615
  • Since beginning of last month:
    • Site-wide: 1,951 out of 83,615

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 3,895 times
  • Download rankings, all-time:
    • Site-wide: 1,072 out of 83,615
    • In bioinformatics: 187 out of 8,013
  • Year to date:
    • Site-wide: 694 out of 83,615
  • Since beginning of last month:
    • Site-wide: 926 out of 83,615

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

bioinformatics more details view paper
  • Downloaded 1,308 times
  • Download rankings, all-time:
    • Site-wide: 6,807 out of 83,615
    • In bioinformatics: 1,220 out of 8,013
  • Year to date:
    • Site-wide: 28,272 out of 83,615
  • Since beginning of last month:
    • Site-wide: 34,136 out of 83,615

A space and time-efficient index for the compacted colored de Bruijn graph

bioinformatics more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 12,811 out of 83,615
    • In bioinformatics: 2,062 out of 8,013
  • Year to date:
    • Site-wide: 55,572 out of 83,615
  • Since beginning of last month:
    • Site-wide: 61,211 out of 83,615

Quark enables semi-reference-based compression of RNA-seq data

bioinformatics more details view paper
  • Downloaded 611 times
  • Download rankings, all-time:
    • Site-wide: 22,282 out of 83,615
    • In bioinformatics: 3,191 out of 8,013
  • Year to date:
    • Site-wide: 78,896 out of 83,615
  • Since beginning of last month:
    • Site-wide: 77,145 out of 83,615

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 28,100 out of 83,615
    • In bioinformatics: 3,766 out of 8,013
  • Year to date:
    • Site-wide: 2,485 out of 83,615
  • Since beginning of last month:
    • Site-wide: 877 out of 83,615

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

bioinformatics more details view paper
  • Downloaded 245 times
  • Download rankings, all-time:
    • Site-wide: 57,367 out of 83,615
    • In bioinformatics: 6,199 out of 8,013
  • Year to date:
    • Site-wide: 7,823 out of 83,615
  • Since beginning of last month:
    • Site-wide: 2,082 out of 83,615

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