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Author: Jack Kuipers

Rankings

  • All-time downloads: 16,330 (rank: 14,877 )
  • Categories:
    • bioinformatics: 3,172 (rank: 5,155 )
    • cancer biology: 9,031 (rank: 268 )
    • evolutionary biology: 140 (rank: 26,714 (tie) )
    • genomics: 1,042 (rank: 25,321 (tie) )
    • oncology: 2,945 (rank: 96 (tie) )

Downloads per author, site-wide

Preprints

Clonal Evolution of Acute Myeloid Leukemia Revealed by High-Throughput Single-Cell Genomics

cancer biology more details view paper
  • Downloaded 3,248 times
  • Download rankings, all-time:
    • Site-wide: 4,897
    • In cancer biology: 72
  • Year to date:
    • Site-wide: 33,451
  • Since beginning of last month:
    • Site-wide: 131,355

The Tumor Profiler Study: Integrated, multi-omic, functional tumor profiling for clinical decision support

oncology more details view paper
  • Downloaded 2,945 times
  • Download rankings, all-time:
    • Site-wide: 5,663
    • In oncology: 6
  • Year to date:
    • Site-wide: 5,236
  • Since beginning of last month:
    • Site-wide: 11,262

Single-cell copy number calling and event history reconstruction

cancer biology more details view paper
  • Downloaded 1,447 times
  • Download rankings, all-time:
    • Site-wide: 16,337
    • In cancer biology: 353
  • Year to date:
    • Site-wide: 9,521
  • Since beginning of last month:
    • Site-wide: 10,138

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

bioinformatics more details view paper
  • Downloaded 1,292 times
  • Download rankings, all-time:
    • Site-wide: 19,391
    • In bioinformatics: 2,199
  • Year to date:
    • Site-wide: 158,945
  • Since beginning of last month:
    • Site-wide: 156,961

Spatial distribution of private gene mutations in clear cell renal cell carcinoma

cancer biology more details view paper
  • Downloaded 1,134 times
  • Download rankings, all-time:
    • Site-wide: 23,602
    • In cancer biology: 571
  • Year to date:
    • Site-wide: 63,009
  • Since beginning of last month:
    • Site-wide: 122,056

A statistical test on single-cell data reveals widespread recurrent mutations in tumor evolution

cancer biology more details view paper
  • Downloaded 1,124 times
  • Download rankings, all-time:
    • Site-wide: 23,974
    • In cancer biology: 587
  • Year to date:
    • Site-wide: 153,829
  • Since beginning of last month:
    • Site-wide: 140,499

SCIΦ: Single-cell mutation identification via phylogenetic inference

bioinformatics more details view paper
  • Downloaded 1,081 times
  • Download rankings, all-time:
    • Site-wide: 25,455
    • In bioinformatics: 2,843
  • Year to date:
    • Site-wide: 142,979
  • Since beginning of last month:
    • Site-wide: 138,190

Within-patient genetic diversity of SARS-CoV-2

genomics more details view paper
  • Downloaded 1,042 times
  • Download rankings, all-time:
    • Site-wide: 26,907
    • In genomics: 2,403
  • Year to date:
    • Site-wide: 15,080
  • Since beginning of last month:
    • Site-wide: 65,911

Mutational interactions define novel cancer subgroups

cancer biology more details view paper
  • Downloaded 807 times
  • Download rankings, all-time:
    • Site-wide: 39,072
    • In cancer biology: 1,056
  • Year to date:
    • Site-wide: 153,576
  • Since beginning of last month:
    • Site-wide: 140,940

Tree inference for single-cell data

cancer biology more details view paper
  • Downloaded 734 times
  • Download rankings, all-time:
    • Site-wide: 44,744
    • In cancer biology: 1,240
  • Year to date:
    • Site-wide: 155,661
  • Since beginning of last month:
    • Site-wide: 155,519

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

bioinformatics more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 79,374
    • In bioinformatics: 7,234
  • Year to date:
    • Site-wide: 17,921
  • Since beginning of last month:
    • Site-wide: 36,515

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects

bioinformatics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 107,970
    • In bioinformatics: 9,069
  • Year to date:
    • Site-wide: 160,934
  • Since beginning of last month:
    • Site-wide: 145,213

A statistical test for clonal exclusivity in tumour evolution

cancer biology more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 128,797
    • In cancer biology: 3,920
  • Year to date:
    • Site-wide: 43,111
  • Since beginning of last month:
    • Site-wide: 58,394

Mapping single-cell transcriptomes to copy number evolutionary trees

cancer biology more details view paper
  • Downloaded 174 times
  • Download rankings, all-time:
    • Site-wide: 148,380
    • In cancer biology: 4,559
  • Year to date:
    • Site-wide: 68,831
  • Since beginning of last month:
    • Site-wide: 6,949

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

evolutionary biology more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 154,813
    • In evolutionary biology: 7,324
  • Year to date:
    • Site-wide: 131,194
  • Since beginning of last month:
    • Site-wide: 120,183

Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees

cancer biology more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 159,335
    • In cancer biology: 4,899
  • Year to date:
    • Site-wide: 107,533
  • Since beginning of last month:
    • Site-wide: 14,933

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