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Author: Feng Yue

Rankings

  • All-time downloads: 21,352 (rank: 5,524 out of 478,981)
  • Categories:
    • bioinformatics: 8,902 (rank: 765 out of 36,834)
    • biophysics: 250 (rank: 14,056 (tie) out of 18,649)
    • cancer biology: 683 (rank: 9,943 (tie) out of 31,426)
    • developmental biology: 170 (rank: 15,403 (tie) out of 17,358)
    • genomics: 11,040 (rank: 1,434 out of 45,498)
    • microbiology: 95 (rank: 48,715 (tie) out of 52,210)
    • physiology: 212 (rank: 6,217 (tie) out of 9,882)

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Preprints

An Integrative Framework For Detecting Structural Variations In Cancer Genomes

genomics more details view paper
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    • In genomics: 257 out of 6,424
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    • Site-wide: 67,113 out of 112,318
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    • Site-wide: 81,814 out of 112,318

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
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    • Site-wide: 3,359 out of 112,318
    • In bioinformatics: 409 out of 9,552
  • Year to date:
    • Site-wide: 34,048 out of 112,318
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    • Site-wide: 30,652 out of 112,318

Measuring the reproducibility and quality of Hi-C data

genomics more details view paper
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    • In genomics: 490 out of 6,424
  • Year to date:
    • Site-wide: 55,005 out of 112,318
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    • Site-wide: 44,849 out of 112,318

HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper
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    • In bioinformatics: 702 out of 9,552
  • Year to date:
    • Site-wide: 76,609 out of 112,318
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    • Site-wide: 55,150 out of 112,318

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

bioinformatics more details view paper
  • Downloaded 1,717 times
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    • Site-wide: 7,186 out of 112,318
    • In bioinformatics: 974 out of 9,552
  • Year to date:
    • Site-wide: 62,823 out of 112,318
  • Since beginning of last month:
    • Site-wide: 52,202 out of 112,318

A supervised learning framework for chromatin loop detection in genome-wide contact maps

bioinformatics more details view paper
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    • Site-wide: 9,789 out of 112,318
    • In bioinformatics: 1,326 out of 9,552
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    • Site-wide: 12,195 out of 112,318
  • Since beginning of last month:
    • Site-wide: 32,461 out of 112,318

An Integrated Framework for Genome Analysis Reveals Numerous Previously Unrecognizable Structural Variants in Leukemia Patients' Samples

genomics more details view paper
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    • In genomics: 1,314 out of 6,424
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    • Site-wide: 20,369 out of 112,318

An integrative ENCODE resource for cancer genomics

genomics more details view paper
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    • Site-wide: 12,026 out of 112,318
    • In genomics: 1,408 out of 6,424
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    • Site-wide: 39,274 out of 112,318

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

genomics more details view paper
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    • Site-wide: 20,698 out of 112,318
    • In genomics: 2,175 out of 6,424
  • Year to date:
    • Site-wide: 14,068 out of 112,318
  • Since beginning of last month:
    • Site-wide: 41,181 out of 112,318

Bayesian Modeling of Epigenetic Variation in Multiple Human Cell Types

bioinformatics more details view paper
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    • Site-wide: 22,501 out of 112,318
    • In bioinformatics: 2,847 out of 9,552
  • Year to date:
    • Site-wide: 102,125 out of 112,318
  • Since beginning of last month:
    • Site-wide: 105,696 out of 112,318

Non-coding germline GATA3 variants alter chromatin topology and contribute to pathogenesis of acute lymphoblastic leukemia

cancer biology more details view paper
  • Downloaded 683 times
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    • Site-wide: 28,419 out of 112,318
    • In cancer biology: 798 out of 3,733
  • Year to date:
    • Site-wide: 8,582 out of 112,318
  • Since beginning of last month:
    • Site-wide: 21,893 out of 112,318

Subtype-specific epigenomic landscape and 3D genome structure in bladder cancer

genomics more details view paper
  • Downloaded 649 times
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    • Site-wide: 30,391 out of 112,318
    • In genomics: 2,861 out of 6,424
  • Year to date:
    • Site-wide: 9,109 out of 112,318
  • Since beginning of last month:
    • Site-wide: 39,944 out of 112,318

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of mouse hematopoietic cells

genomics more details view paper
  • Downloaded 265 times
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    • Site-wide: 75,267 out of 112,318
    • In genomics: 5,122 out of 6,424
  • Year to date:
    • Site-wide: 102,393 out of 112,318
  • Since beginning of last month:
    • Site-wide: 95,278 out of 112,318

HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics

biophysics more details view paper
  • Downloaded 250 times
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    • Site-wide: 78,157 out of 112,319
    • In biophysics: 3,177 out of 4,603
  • Year to date:
    • Site-wide: 30,037 out of 112,319
  • Since beginning of last month:
    • Site-wide: 2,402 out of 112,319

Advanced Glycation End-Products Suppress Mitochondrial Function and Proliferative Capacity of Achilles Tendon-Derived Fibroblasts

physiology more details view paper
  • Downloaded 212 times
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    • Site-wide: 85,494 out of 112,319
    • In physiology: 848 out of 1,496
  • Year to date:
    • Site-wide: 83,230 out of 112,319
  • Since beginning of last month:
    • Site-wide: 104,054 out of 112,319

PTEN Inhibition Ameliorates Muscle Degeneration and Improves Muscle Function in a Mouse Model of Duchenne Muscular Dystrophy

developmental biology more details view paper
  • Downloaded 170 times
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    • Site-wide: 93,299 out of 112,319
    • In developmental biology: 2,665 out of 3,108
  • Year to date:
    • Site-wide: 46,650 out of 112,319
  • Since beginning of last month:
    • Site-wide: 25,806 out of 112,319

Longitudinal multi-omics along gingivitis development reveal a suboptimal-health gum state with periodontitis-like microbiome

microbiology more details view paper
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    • Site-wide: 104,283 out of 112,319
    • In microbiology: 8,330 out of 9,327
  • Year to date:
    • Site-wide: 79,659 out of 112,319
  • Since beginning of last month:
    • Site-wide: 18,300 out of 112,319

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