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Author: Sandrine Dudoit

  • ORCiD: http://orcid.org/0000-0002-6069-8629
  • Most recently observed institution: Department of Statistics, Division of Biostatistics, and Center for Computational Biology, University of California, Berkeley

Rankings

  • All-time downloads: 45,952 (rank: 743 out of 361,442)
  • Categories:
    • bioinformatics: 12,822 (rank: 363 out of 31,231)
    • genomics: 4,260 (rank: 4,170 (tie) out of 39,073)
    • microbiology: 1,350 (rank: 5,090 (tie) out of 39,813)
    • neuroscience: 27,520 (rank: 88 (tie) out of 60,721)

Downloads per author, site-wide

Preprints

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

neuroscience more details view paper
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    • Site-wide: 49 out of 83,933
    • In neuroscience: 6 out of 14,944
  • Year to date:
    • Site-wide: 25 out of 83,933
  • Since beginning of last month:
    • Site-wide: 19 out of 83,933

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 4,517 times
  • Download rankings, all-time:
    • Site-wide: 816 out of 83,933
    • In bioinformatics: 144 out of 8,043
  • Year to date:
    • Site-wide: 16,673 out of 83,933
  • Since beginning of last month:
    • Site-wide: 14,061 out of 83,933

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

genomics more details view paper
  • Downloaded 3,558 times
  • Download rankings, all-time:
    • Site-wide: 1,253 out of 83,933
    • In genomics: 275 out of 5,415
  • Year to date:
    • Site-wide: 5,378 out of 83,933
  • Since beginning of last month:
    • Site-wide: 6,615 out of 83,933

Trajectory-based differential expression analysis for single-cell sequencing data

bioinformatics more details view paper
  • Downloaded 2,565 times
  • Download rankings, all-time:
    • Site-wide: 2,221 out of 83,933
    • In bioinformatics: 410 out of 8,043
  • Year to date:
    • Site-wide: 1,353 out of 83,933
  • Since beginning of last month:
    • Site-wide: 3,146 out of 83,933

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 2,343 times
  • Download rankings, all-time:
    • Site-wide: 2,602 out of 83,933
    • In neuroscience: 367 out of 14,944
  • Year to date:
    • Site-wide: 334 out of 83,933
  • Since beginning of last month:
    • Site-wide: 741 out of 83,933

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

bioinformatics more details view paper
  • Downloaded 2,200 times
  • Download rankings, all-time:
    • Site-wide: 2,891 out of 83,933
    • In bioinformatics: 533 out of 8,043
  • Year to date:
    • Site-wide: 29,263 out of 83,933
  • Since beginning of last month:
    • Site-wide: 15,406 out of 83,933

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

microbiology more details view paper
  • Downloaded 1,350 times
  • Download rankings, all-time:
    • Site-wide: 6,508 out of 83,933
    • In microbiology: 367 out of 7,145
  • Year to date:
    • Site-wide: 20,157 out of 83,933
  • Since beginning of last month:
    • Site-wide: 27,632 out of 83,933

Data-adaptive pipeline for filtering and normalizing metabolomics data.

bioinformatics more details view paper
  • Downloaded 1,111 times
  • Download rankings, all-time:
    • Site-wide: 8,972 out of 83,933
    • In bioinformatics: 1,508 out of 8,043
  • Year to date:
    • Site-wide: 14,793 out of 83,933
  • Since beginning of last month:
    • Site-wide: 18,938 out of 83,933

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 853 times
  • Download rankings, all-time:
    • Site-wide: 13,620 out of 83,933
    • In bioinformatics: 2,165 out of 8,043
  • Year to date:
    • Site-wide: 53,385 out of 83,933
  • Since beginning of last month:
    • Site-wide: 45,578 out of 83,933

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

bioinformatics more details view paper
  • Downloaded 845 times
  • Download rankings, all-time:
    • Site-wide: 13,821 out of 83,933
    • In bioinformatics: 2,185 out of 8,043
  • Year to date:
    • Site-wide: 64,447 out of 83,933
  • Since beginning of last month:
    • Site-wide: 57,376 out of 83,933

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

genomics more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 18,316 out of 83,933
    • In genomics: 2,216 out of 5,415
  • Year to date:
    • Site-wide: 3,897 out of 83,933
  • Since beginning of last month:
    • Site-wide: 4,588 out of 83,933

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioinformatics more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 24,625 out of 83,933
    • In bioinformatics: 3,425 out of 8,043
  • Year to date:
    • Site-wide: 2,168 out of 83,933
  • Since beginning of last month:
    • Site-wide: 2,338 out of 83,933

adductomicsR: A package for detection and quantification of protein adducts from mass spectra of tryptic digests

bioinformatics more details view paper
  • Downloaded 160 times
  • Download rankings, all-time:
    • Site-wide: 71,701 out of 83,933
    • In bioinformatics: 7,200 out of 8,043
  • Year to date:
    • Site-wide: 71,587 out of 83,933
  • Since beginning of last month:
    • Site-wide: 55,570 out of 83,933

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