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Author: Mark D Robinson

Rankings

  • All-time downloads: 56,471 (rank: 2,957 )
  • Categories:
    • bioinformatics: 46,286 (rank: 68 )
    • cancer biology: 929 (rank: 10,357 (tie) )
    • cell biology: 446 (rank: 23,839 (tie) )
    • developmental biology: 998 (rank: 4,674 (tie) )
    • evolutionary biology: 977 (rank: 7,827 (tie) )
    • genetics: 2,230 (rank: 8,792 (tie) )
    • genomics: 2,499 (rank: 10,292 (tie) )
    • immunology: 1,175 (rank: 10,297 (tie) )
    • neuroscience: 931 (rank: 28,440 (tie) )

Downloads per author, site-wide

Preprints

On the discovery of subpopulation-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data

bioinformatics more details view paper
  • Downloaded 5,268 times
  • Download rankings, all-time:
    • Site-wide: 2,226
    • In bioinformatics: 172
  • Year to date:
    • Site-wide: 5,707
  • Since beginning of last month:
    • Site-wide: 83,573

MINI REVIEW: Statistical methods for detecting differentially methylated loci and regions

bioinformatics more details view paper
  • Downloaded 5,155 times
  • Download rankings, all-time:
    • Site-wide: 2,291
    • In bioinformatics: 179
  • Year to date:
    • Site-wide: 76,421
  • Since beginning of last month:
    • Site-wide: None

Bias, Robustness And Scalability In Differential Expression Analysis Of Single-Cell RNA-Seq Data

bioinformatics more details view paper
  • Downloaded 5,128 times
  • Download rankings, all-time:
    • Site-wide: 2,313
    • In bioinformatics: 182
  • Year to date:
    • Site-wide: 20,598
  • Since beginning of last month:
    • Site-wide: 10,730

Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data

bioinformatics more details view paper
  • Downloaded 4,830 times
  • Download rankings, all-time:
    • Site-wide: 2,524
    • In bioinformatics: 201
  • Year to date:
    • Site-wide: 29,689
  • Since beginning of last month:
    • Site-wide: 9,822

Channel crosstalk correction in suspension and imaging mass cytometry

bioinformatics more details view paper
  • Downloaded 2,928 times
  • Download rankings, all-time:
    • Site-wide: 5,083
    • In bioinformatics: 497
  • Year to date:
    • Site-wide: 24,290
  • Since beginning of last month:
    • Site-wide: 75,415

Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods

bioinformatics more details view paper
  • Downloaded 2,424 times
  • Download rankings, all-time:
    • Site-wide: 6,700
    • In bioinformatics: 719
  • Year to date:
    • Site-wide: 71,257
  • Since beginning of last month:
    • Site-wide: None

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

bioinformatics more details view paper
  • Downloaded 2,419 times
  • Download rankings, all-time:
    • Site-wide: 6,724
    • In bioinformatics: 725
  • Year to date:
    • Site-wide: 31,008
  • Since beginning of last month:
    • Site-wide: None

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

bioinformatics more details view paper
  • Downloaded 2,272 times
  • Download rankings, all-time:
    • Site-wide: 7,377
    • In bioinformatics: 818
  • Year to date:
    • Site-wide: 69,285
  • Since beginning of last month:
    • Site-wide: 106,576

pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single-cell RNA-seq preprocessing tools

bioinformatics more details view paper
  • Downloaded 2,268 times
  • Download rankings, all-time:
    • Site-wide: 7,392
    • In bioinformatics: 820
  • Year to date:
    • Site-wide: 25,127
  • Since beginning of last month:
    • Site-wide: 83,232

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

bioinformatics more details view paper
  • Downloaded 2,093 times
  • Download rankings, all-time:
    • Site-wide: 8,288
    • In bioinformatics: 937
  • Year to date:
    • Site-wide: 62,294
  • Since beginning of last month:
    • Site-wide: 74,910

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens

genomics more details view paper
  • Downloaded 1,741 times
  • Download rankings, all-time:
    • Site-wide: 10,907
    • In genomics: 1,120
  • Year to date:
    • Site-wide: 106,175
  • Since beginning of last month:
    • Site-wide: None

CrispRVariants: precisely charting the mutation spectrum in genome engineering experiments

bioinformatics more details view paper
  • Downloaded 1,702 times
  • Download rankings, all-time:
    • Site-wide: 11,256
    • In bioinformatics: 1,298
  • Year to date:
    • Site-wide: 51,220
  • Since beginning of last month:
    • Site-wide: 84,908

ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 20,202
    • In bioinformatics: 2,318
  • Year to date:
    • Site-wide: 111,778
  • Since beginning of last month:
    • Site-wide: 52,886

Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 RNPs

genetics more details view paper
  • Downloaded 1,133 times
  • Download rankings, all-time:
    • Site-wide: 20,653
    • In genetics: 949
  • Year to date:
    • Site-wide: 91,533
  • Since beginning of last month:
    • Site-wide: 20,273

Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests

genetics more details view paper
  • Downloaded 1,097 times
  • Download rankings, all-time:
    • Site-wide: 21,637
    • In genetics: 992
  • Year to date:
    • Site-wide: 90,008
  • Since beginning of last month:
    • Site-wide: 24,908

Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

bioinformatics more details view paper
  • Downloaded 1,016 times
  • Download rankings, all-time:
    • Site-wide: 24,176
    • In bioinformatics: 2,760
  • Year to date:
    • Site-wide: 131,924
  • Since beginning of last month:
    • Site-wide: 59,555

Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma

developmental biology more details view paper
  • Downloaded 998 times
  • Download rankings, all-time:
    • Site-wide: 24,871
    • In developmental biology: 450
  • Year to date:
    • Site-wide: 7,699
  • Since beginning of last month:
    • Site-wide: 73,821

Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

evolutionary biology more details view paper
  • Downloaded 977 times
  • Download rankings, all-time:
    • Site-wide: 25,650
    • In evolutionary biology: 1,086
  • Year to date:
    • Site-wide: 99,339
  • Since beginning of last month:
    • Site-wide: 71,007

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 25,701
    • In bioinformatics: 2,908
  • Year to date:
    • Site-wide: 111,091
  • Since beginning of last month:
    • Site-wide: 96,151

TNFR2 induced priming of NLRP3-inflammasome via RIPK1 leads to pyroptosis in XIAP deficient cells

immunology more details view paper
  • Downloaded 945 times
  • Download rankings, all-time:
    • Site-wide: 26,913
    • In immunology: 884
  • Year to date:
    • Site-wide: 66,703
  • Since beginning of last month:
    • Site-wide: 36,580

Synaptic accumulation of FUS triggers age-dependent misregulation of inhibitory synapses in ALS-FUS mice

neuroscience more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 27,504
    • In neuroscience: 3,520
  • Year to date:
    • Site-wide: 22,501
  • Since beginning of last month:
    • Site-wide: 93,100

distinct: a novel approach to differential distribution analyses

bioinformatics more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 30,439
    • In bioinformatics: 3,393
  • Year to date:
    • Site-wide: 11,942
  • Since beginning of last month:
    • Site-wide: 78,283

treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses

bioinformatics more details view paper
  • Downloaded 846 times
  • Download rankings, all-time:
    • Site-wide: 31,501
    • In bioinformatics: 3,487
  • Year to date:
    • Site-wide: 23,005
  • Since beginning of last month:
    • Site-wide: 49,994

A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

bioinformatics more details view paper
  • Downloaded 720 times
  • Download rankings, all-time:
    • Site-wide: 39,407
    • In bioinformatics: 4,229
  • Year to date:
    • Site-wide: 128,824
  • Since beginning of last month:
    • Site-wide: 46,017

BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty

bioinformatics more details view paper
  • Downloaded 713 times
  • Download rankings, all-time:
    • Site-wide: 39,940
    • In bioinformatics: 4,287
  • Year to date:
    • Site-wide: 143,365
  • Since beginning of last month:
    • Site-wide: 104,897

CellMixS: quantifying and visualizing batch effects in single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 41,828
    • In bioinformatics: 4,466
  • Year to date:
    • Site-wide: 19,203
  • Since beginning of last month:
    • Site-wide: 90,621

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 621 times
  • Download rankings, all-time:
    • Site-wide: 47,790
    • In bioinformatics: 4,949
  • Year to date:
    • Site-wide: 113,252
  • Since beginning of last month:
    • Site-wide: 108,947

iCOBRA: open, reproducible, standardized and live method benchmarking

bioinformatics more details view paper
  • Downloaded 595 times
  • Download rankings, all-time:
    • Site-wide: 50,475
    • In bioinformatics: 5,145
  • Year to date:
    • Site-wide: 149,289
  • Since beginning of last month:
    • Site-wide: None

The proto CpG island methylator phenotype of sessile serrated adenoma/polyps

cancer biology more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 52,527
    • In cancer biology: 1,490
  • Year to date:
    • Site-wide: 101,381
  • Since beginning of last month:
    • Site-wide: 44,427

ReSeq simulates realistic Illumina high-throughput sequencing data

genomics more details view paper
  • Downloaded 551 times
  • Download rankings, all-time:
    • Site-wide: 55,428
    • In genomics: 4,168
  • Year to date:
    • Site-wide: 46,077
  • Since beginning of last month:
    • Site-wide: 119,242

DAMEfinder: A method to detect differential allele-specific methylation

bioinformatics more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 57,699
    • In bioinformatics: 5,751
  • Year to date:
    • Site-wide: 121,728
  • Since beginning of last month:
    • Site-wide: None

benchmarkR: an R package for benchmarking genome-scale methods

bioinformatics more details view paper
  • Downloaded 480 times
  • Download rankings, all-time:
    • Site-wide: 64,911
    • In bioinformatics: 6,288
  • Year to date:
    • Site-wide: 146,084
  • Since beginning of last month:
    • Site-wide: 36,952

Active Receptor Tyrosine Kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish

cancer biology more details view paper
  • Downloaded 353 times
  • Download rankings, all-time:
    • Site-wide: 87,557
    • In cancer biology: 2,617
  • Year to date:
    • Site-wide: 138,615
  • Since beginning of last month:
    • Site-wide: None

ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw

bioinformatics more details view paper
  • Downloaded 285 times
  • Download rankings, all-time:
    • Site-wide: 102,877
    • In bioinformatics: 8,761
  • Year to date:
    • Site-wide: 57,257
  • Since beginning of last month:
    • Site-wide: 119,334

Mass Cytometric and Transcriptomic Profiling of Epithelial-Mesenchymal Transitions in Human Mammary Cell Lines

cell biology more details view paper
  • Downloaded 244 times
  • Download rankings, all-time:
    • Site-wide: 112,744
    • In cell biology: 5,229
  • Year to date:
    • Site-wide: 25,271
  • Since beginning of last month:
    • Site-wide: 95,021

Loss of C3aR induces immune infiltration and inflammatory microbiota in a novel spontaneous model of colon cancer

immunology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 116,491
    • In immunology: 3,444
  • Year to date:
    • Site-wide: 27,330
  • Since beginning of last month:
    • Site-wide: 119,051

LincRNAs involved in DCS-induced fear extinction: Shedding light on the transcriptomic dark matter

genomics more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 122,213
    • In genomics: 6,773
  • Year to date:
    • Site-wide: 142,389
  • Since beginning of last month:
    • Site-wide: None

A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells

cell biology more details view paper
  • Downloaded 202 times
  • Download rankings, all-time:
    • Site-wide: 123,447
    • In cell biology: 5,687
  • Year to date:
    • Site-wide: 96,762
  • Since beginning of last month:
    • Site-wide: 80,444

censcyt: censored covariates in differential abundance analysis in cytometry

bioinformatics more details view paper
  • Downloaded 179 times
  • Download rankings, all-time:
    • Site-wide: 128,821
    • In bioinformatics: 10,268
  • Year to date:
    • Site-wide: 93,212
  • Since beginning of last month:
    • Site-wide: 90,411

SampleQC: robust multivariate, multi-celltype, multi-sample quality control for single cell data

bioinformatics more details view paper
  • Downloaded 130 times
  • Download rankings, all-time:
    • Site-wide: 139,949
    • In bioinformatics: 10,832
  • Year to date:
    • Site-wide: 52,916
  • Since beginning of last month:
    • Site-wide: 2,010

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