Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 53,027 bioRxiv papers from 245,564 authors.

Author: Charlotte Soneson

Rankings

  • All-time downloads: 15,287 (rank: 1,599 out of 245,564)
  • Categories:
    • bioinformatics: 13,842 (rank: 125 out of 21,734)
    • genomics: 1,445 (rank: 8,201 (tie) out of 28,414)

Downloads per author, site-wide

Preprints

Bias, Robustness And Scalability In Differential Expression Analysis Of Single-Cell RNA-Seq Data

bioinformatics more details view paper
  • Downloaded 4,028 times
  • Download rankings, all-time:
    • Site-wide: 507 out of 53,027
    • In bioinformatics: 102 out of 5,533
  • Year to date:
    • Site-wide: 5,049 out of 53,027
  • Since beginning of last month:
    • Site-wide: 5,956 out of 53,027

Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods

bioinformatics more details view paper
  • Downloaded 1,888 times
  • Download rankings, all-time:
    • Site-wide: 2,040 out of 53,027
    • In bioinformatics: 430 out of 5,533
  • Year to date:
    • Site-wide: 19,872 out of 53,027
  • Since beginning of last month:
    • Site-wide: 20,149 out of 53,027

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

bioinformatics more details view paper
  • Downloaded 1,663 times
  • Download rankings, all-time:
    • Site-wide: 2,537 out of 53,027
    • In bioinformatics: 524 out of 5,533
  • Year to date:
    • Site-wide: 1,592 out of 53,027
  • Since beginning of last month:
    • Site-wide: 4,152 out of 53,027

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

bioinformatics more details view paper
  • Downloaded 1,607 times
  • Download rankings, all-time:
    • Site-wide: 2,683 out of 53,027
    • In bioinformatics: 551 out of 5,533
  • Year to date:
    • Site-wide: 10,946 out of 53,027
  • Since beginning of last month:
    • Site-wide: 16,754 out of 53,027

Orchestrating Single-Cell Analysis with Bioconductor

genomics more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 3,174 out of 53,027
    • In genomics: 625 out of 3,782
  • Year to date:
    • Site-wide: 315 out of 53,027
  • Since beginning of last month:
    • Site-wide: 559 out of 53,027

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

bioinformatics more details view paper
  • Downloaded 978 times
  • Download rankings, all-time:
    • Site-wide: 5,972 out of 53,027
    • In bioinformatics: 1,116 out of 5,533
  • Year to date:
    • Site-wide: 691 out of 53,027
  • Since beginning of last month:
    • Site-wide: 1,988 out of 53,027

Alignment and mapping methodology influence transcript abundance estimation

bioinformatics more details view paper
  • Downloaded 842 times
  • Download rankings, all-time:
    • Site-wide: 7,542 out of 53,027
    • In bioinformatics: 1,364 out of 5,533
  • Year to date:
    • Site-wide: 920 out of 53,027
  • Since beginning of last month:
    • Site-wide: 115 out of 53,027

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

bioinformatics more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 9,156 out of 53,027
    • In bioinformatics: 1,635 out of 5,533
  • Year to date:
    • Site-wide: 36,089 out of 53,027
  • Since beginning of last month:
    • Site-wide: 39,548 out of 53,027

ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data

bioinformatics more details view paper
  • Downloaded 715 times
  • Download rankings, all-time:
    • Site-wide: 9,640 out of 53,027
    • In bioinformatics: 1,688 out of 5,533
  • Year to date:
    • Site-wide: 1,226 out of 53,027
  • Since beginning of last month:
    • Site-wide: 5,983 out of 53,027

A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

bioinformatics more details view paper
  • Downloaded 536 times
  • Download rankings, all-time:
    • Site-wide: 14,193 out of 53,027
    • In bioinformatics: 2,301 out of 5,533
  • Year to date:
    • Site-wide: 35,716 out of 53,027
  • Since beginning of last month:
    • Site-wide: 40,675 out of 53,027

iCOBRA: open, reproducible, standardized and live method benchmarking

bioinformatics more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 17,256 out of 53,027
    • In bioinformatics: 2,636 out of 5,533
  • Year to date:
    • Site-wide: 46,644 out of 53,027
  • Since beginning of last month:
    • Site-wide: 49,067 out of 53,027

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

bioinformatics more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 20,775 out of 53,027
    • In bioinformatics: 3,024 out of 5,533
  • Year to date:
    • Site-wide: 26,129 out of 53,027
  • Since beginning of last month:
    • Site-wide: 23,290 out of 53,027

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News