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Author: Bonnie Berger

Rankings

  • All-time downloads: 59,131 (rank: 2,110 )
  • Categories:
    • bioinformatics: 24,045 (rank: 117 )
    • developmental biology: 838 (rank: 4,251 (tie) )
    • genetic and genomic medicine: 970 (rank: 1,334 (tie) )
    • genetics: 29,247 (rank: 195 )
    • immunology: 1,138 (rank: 6,597 (tie) )
    • molecular biology: 2,893 (rank: 1,129 (tie) )

Downloads per author, site-wide

Preprints

Ancient human genomes suggest three ancestral populations for present-day Europeans

genetics more details view paper
  • Downloaded 19,236 times
  • Download rankings, all-time:
    • Site-wide: 312
    • In genetics: 5
  • Year to date:
    • Site-wide: 4,244
  • Since beginning of last month:
    • Site-wide: 9,840

Reconstructing Austronesian population history in Island Southeast Asia

genetics more details view paper
  • Downloaded 5,173 times
  • Download rankings, all-time:
    • Site-wide: 1,628
    • In genetics: 62
  • Year to date:
    • Site-wide: 1,514
  • Since beginning of last month:
    • Site-wide: 2,361

Panoramic stitching of heterogeneous single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 3,978 times
  • Download rankings, all-time:
    • Site-wide: 2,359
    • In bioinformatics: 230
  • Year to date:
    • Site-wide: 61,652
  • Since beginning of last month:
    • Site-wide: 40,986

CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks

molecular biology more details view paper
  • Downloaded 2,893 times
  • Download rankings, all-time:
    • Site-wide: 3,739
    • In molecular biology: 85
  • Year to date:
    • Site-wide: 1,230
  • Since beginning of last month:
    • Site-wide: 1,805

Coexpression enables multi-study cellular trajectories of development and disease

bioinformatics more details view paper
  • Downloaded 2,668 times
  • Download rankings, all-time:
    • Site-wide: 4,215
    • In bioinformatics: 483
  • Year to date:
    • Site-wide: 9,675
  • Since beginning of last month:
    • Site-wide: 16,897

Topaz-Denoise: general deep denoising models for cryoEM and cryoET

bioinformatics more details view paper
  • Downloaded 2,515 times
  • Download rankings, all-time:
    • Site-wide: 4,591
    • In bioinformatics: 540
  • Year to date:
    • Site-wide: 12,523
  • Since beginning of last month:
    • Site-wide: 7,067

Efficient Bayesian mixed model analysis increases association power in large cohorts

genetics more details view paper
  • Downloaded 2,250 times
  • Download rankings, all-time:
    • Site-wide: 5,443
    • In genetics: 271
  • Year to date:
    • Site-wide: 26,380
  • Since beginning of last month:
    • Site-wide: 45,459

Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape

bioinformatics more details view paper
  • Downloaded 2,127 times
  • Download rankings, all-time:
    • Site-wide: 5,907
    • In bioinformatics: 732
  • Year to date:
    • Site-wide: 49,630
  • Since beginning of last month:
    • Site-wide: 58,986

Density-Preserving Data Visualization Unveils Dynamic Patterns of Single-Cell Transcriptomic Variability

bioinformatics more details view paper
  • Downloaded 1,606 times
  • Download rankings, all-time:
    • Site-wide: 8,999
    • In bioinformatics: 1,140
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 4,017

Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes

genetics more details view paper
  • Downloaded 1,587 times
  • Download rankings, all-time:
    • Site-wide: 9,157
    • In genetics: 475
  • Year to date:
    • Site-wide: 57,217
  • Since beginning of last month:
    • Site-wide: 70,420

Learning with uncertainty for biological discovery and design

bioinformatics more details view paper
  • Downloaded 1,529 times
  • Download rankings, all-time:
    • Site-wide: 9,699
    • In bioinformatics: 1,240
  • Year to date:
    • Site-wide: 3,148
  • Since beginning of last month:
    • Site-wide: 3,737

Metagenomic binning through low density hashing

bioinformatics more details view paper
  • Downloaded 1,432 times
  • Download rankings, all-time:
    • Site-wide: 10,649
    • In bioinformatics: 1,366
  • Year to date:
    • Site-wide: 41,509
  • Since beginning of last month:
    • Site-wide: 86,802

Latent variable model for aligning barcoded short-reads improves downstream analyses

bioinformatics more details view paper
  • Downloaded 1,378 times
  • Download rankings, all-time:
    • Site-wide: 11,316
    • In bioinformatics: 1,445
  • Year to date:
    • Site-wide: 46,042
  • Since beginning of last month:
    • Site-wide: 46,376

Neural Data Visualization for Scalable and Generalizable Single Cell Analysis

bioinformatics more details view paper
  • Downloaded 1,135 times
  • Download rankings, all-time:
    • Site-wide: 15,119
    • In bioinformatics: 1,921
  • Year to date:
    • Site-wide: 63,259
  • Since beginning of last month:
    • Site-wide: 103,792

Learning the language of viral evolution and escape

bioinformatics more details view paper
  • Downloaded 1,113 times
  • Download rankings, all-time:
    • Site-wide: 15,568
    • In bioinformatics: 1,967
  • Year to date:
    • Site-wide: 474
  • Since beginning of last month:
    • Site-wide: 2,342

Two variance component model improves genetic prediction in family data sets

genetics more details view paper
  • Downloaded 1,001 times
  • Download rankings, all-time:
    • Site-wide: 18,290
    • In genetics: 931
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 118,125

Large mosaic copy number variations confer autism risk

genetic and genomic medicine more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 19,141
    • In genetic and genomic medicine: 52
  • Year to date:
    • Site-wide: 14,643
  • Since beginning of last month:
    • Site-wide: 9,211

Metric learning enables synthesis of heterogeneous single-cell modalities

bioinformatics more details view paper
  • Downloaded 893 times
  • Download rankings, all-time:
    • Site-wide: 21,561
    • In bioinformatics: 2,661
  • Year to date:
    • Site-wide: 5,873
  • Since beginning of last month:
    • Site-wide: 17,401

C. elegans exhibits coordinated oscillation in gene activation in single-cell developmental data

developmental biology more details view paper
  • Downloaded 838 times
  • Download rankings, all-time:
    • Site-wide: 23,683
    • In developmental biology: 476
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 94,604

Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads

bioinformatics more details view paper
  • Downloaded 806 times
  • Download rankings, all-time:
    • Site-wide: 24,950
    • In bioinformatics: 3,034
  • Year to date:
    • Site-wide: 46,201
  • Since beginning of last month:
    • Site-wide: 79,788

Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control

immunology more details view paper
  • Downloaded 803 times
  • Download rankings, all-time:
    • Site-wide: 25,048
    • In immunology: 680
  • Year to date:
    • Site-wide: 5,919
  • Since beginning of last month:
    • Site-wide: 3,327

Fast genotyping of known SNPs through approximate k-mer matching

bioinformatics more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 31,739
    • In bioinformatics: 3,687
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 115,360

Hopper: A Mathematically Optimal Algorithm for Sketching Biological Data

bioinformatics more details view paper
  • Downloaded 508 times
  • Download rankings, all-time:
    • Site-wide: 45,612
    • In bioinformatics: 4,887
  • Year to date:
    • Site-wide: 56,630
  • Since beginning of last month:
    • Site-wide: 83,263

A Python-based optimization framework for high-performance genomics

bioinformatics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 46,498
    • In bioinformatics: 4,956
  • Year to date:
    • Site-wide: 8,261
  • Since beginning of last month:
    • Site-wide: 13,295

A randomized parallel algorithm for efficiently finding near-optimal universal hitting sets

bioinformatics more details view paper
  • Downloaded 433 times
  • Download rankings, all-time:
    • Site-wide: 54,499
    • In bioinformatics: 5,635
  • Year to date:
    • Site-wide: 18,483
  • Since beginning of last month:
    • Site-wide: 47,037

Sequence biases in CLIP experimental data are incorporated in protein RNA-binding models

bioinformatics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 58,150
    • In bioinformatics: 5,897
  • Year to date:
    • Site-wide: 67,641
  • Since beginning of last month:
    • Site-wide: 111,125

Privacy-preserving biomedical database queries with optimal privacy-utility trade-offs

bioinformatics more details view paper
  • Downloaded 342 times
  • Download rankings, all-time:
    • Site-wide: 68,357
    • In bioinformatics: 6,635
  • Year to date:
    • Site-wide: 28,308
  • Since beginning of last month:
    • Site-wide: 54,323

GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling

immunology more details view paper
  • Downloaded 335 times
  • Download rankings, all-time:
    • Site-wide: 69,493
    • In immunology: 1,829
  • Year to date:
    • Site-wide: 20,487
  • Since beginning of last month:
    • Site-wide: 21,016

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