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Author: Ken Chen

Rankings

  • All-time downloads: 47,190 (rank: 5,551 )
  • Categories:
    • bioinformatics: 15,574 (rank: 655 )
    • cancer biology: 3,684 (rank: 2,373 (tie) )
    • developmental biology: 300 (rank: 24,287 (tie) )
    • genomics: 22,838 (rank: 704 )
    • immunology: 4,006 (rank: 4,539 (tie) )

Downloads per author, site-wide

Preprints

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,640 times
  • Download rankings, all-time:
    • Site-wide: 1,664
    • In genomics: 117
  • Year to date:
    • Site-wide: 19,183
  • Since beginning of last month:
    • Site-wide: 90,395

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 7,114 times
  • Download rankings, all-time:
    • Site-wide: 2,161
    • In genomics: 159
  • Year to date:
    • Site-wide: 5,174
  • Since beginning of last month:
    • Site-wide: 10,802

Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours

genomics more details view paper
  • Downloaded 3,873 times
  • Download rankings, all-time:
    • Site-wide: 5,028
    • In genomics: 464
  • Year to date:
    • Site-wide: 73,694
  • Since beginning of last month:
    • Site-wide: 142,992

Unbiased integration of single cell multi-omics data

bioinformatics more details view paper
  • Downloaded 3,176 times
  • Download rankings, all-time:
    • Site-wide: 6,740
    • In bioinformatics: 626
  • Year to date:
    • Site-wide: 11,936
  • Since beginning of last month:
    • Site-wide: 29,240

Spatial drivers and pre-cancer populations collaborate with the microenvironment in untreated and chemo-resistant pancreatic cancer

cancer biology more details view paper
  • Downloaded 2,558 times
  • Download rankings, all-time:
    • Site-wide: 9,248
    • In cancer biology: 166
  • Year to date:
    • Site-wide: 8,853
  • Since beginning of last month:
    • Site-wide: 15,837

Spatial charting of single cell transcriptomes in tissues

genomics more details view paper
  • Downloaded 2,196 times
  • Download rankings, all-time:
    • Site-wide: 11,667
    • In genomics: 1,125
  • Year to date:
    • Site-wide: 5,322
  • Since beginning of last month:
    • Site-wide: 3,372

SiFit: A Method for Inferring Tumor Trees from Single-Cell Sequencing Data under Finite-site Models

bioinformatics more details view paper
  • Downloaded 1,553 times
  • Download rankings, all-time:
    • Site-wide: 19,928
    • In bioinformatics: 2,188
  • Year to date:
    • Site-wide: 165,803
  • Since beginning of last month:
    • Site-wide: 117,888

CIS checkpoint deletion enhances the fitness of cord blood derived natural killer cells transduced with a chimeric antigen receptor

immunology more details view paper
  • Downloaded 1,360 times
  • Download rankings, all-time:
    • Site-wide: 24,670
    • In immunology: 908
  • Year to date:
    • Site-wide: 47,142
  • Since beginning of last month:
    • Site-wide: 30,079

Inhibition of the av integrin-TGF-b axis improves natural killer cell function against glioblastoma stem cells

immunology more details view paper
  • Downloaded 1,354 times
  • Download rankings, all-time:
    • Site-wide: 24,863
    • In immunology: 915
  • Year to date:
    • Site-wide: 67,108
  • Since beginning of last month:
    • Site-wide: 65,991

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data

genomics more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 30,744
    • In genomics: 2,551
  • Year to date:
    • Site-wide: 173,071
  • Since beginning of last month:
    • Site-wide: 142,472

Single-cell copy number lineage tracing enabling gene discovery

bioinformatics more details view paper
  • Downloaded 1,140 times
  • Download rankings, all-time:
    • Site-wide: 32,617
    • In bioinformatics: 3,501
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 190,396

Single-Cell Manifold Preserving Feature Selection (SCMER)

bioinformatics more details view paper
  • Downloaded 1,105 times
  • Download rankings, all-time:
    • Site-wide: 34,183
    • In bioinformatics: 3,601
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 136,546

Generation of glucocorticoid resistant SARS-CoV-2 T-cells for adoptive cell therapy

immunology more details view paper
  • Downloaded 1,036 times
  • Download rankings, all-time:
    • Site-wide: 37,761
    • In immunology: 1,354
  • Year to date:
    • Site-wide: 85,568
  • Since beginning of last month:
    • Site-wide: 65,842

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 1,022 times
  • Download rankings, all-time:
    • Site-wide: 38,574
    • In bioinformatics: 4,028
  • Year to date:
    • Site-wide: 195,176
  • Since beginning of last month:
    • Site-wide: 92,418

SCMarker: ab initio marker selection for single cell transcriptome profiling

bioinformatics more details view paper
  • Downloaded 1,008 times
  • Download rankings, all-time:
    • Site-wide: 39,359
    • In bioinformatics: 4,106
  • Year to date:
    • Site-wide: 194,916
  • Since beginning of last month:
    • Site-wide: 120,004

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

bioinformatics more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 42,898
    • In bioinformatics: 4,447
  • Year to date:
    • Site-wide: 87,414
  • Since beginning of last month:
    • Site-wide: 102,190

HySA: A Hybrid Structural variant Assembly approach using next generation and single-molecule sequencing technologies

bioinformatics more details view paper
  • Downloaded 931 times
  • Download rankings, all-time:
    • Site-wide: 44,517
    • In bioinformatics: 4,571
  • Year to date:
    • Site-wide: 97,944
  • Since beginning of last month:
    • Site-wide: 142,004

Latent periodic process inference from single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 711 times
  • Download rankings, all-time:
    • Site-wide: 66,740
    • In bioinformatics: 6,334
  • Year to date:
    • Site-wide: 98,876
  • Since beginning of last month:
    • Site-wide: 94,237

Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution.

cancer biology more details view paper
  • Downloaded 698 times
  • Download rankings, all-time:
    • Site-wide: 68,490
    • In cancer biology: 2,022
  • Year to date:
    • Site-wide: 23,290
  • Since beginning of last month:
    • Site-wide: 86,457

OmicPioneer-sc: an integrated, interactive visualization environment for single-cell sequencing data

bioinformatics more details view paper
  • Downloaded 550 times
  • Download rankings, all-time:
    • Site-wide: 93,364
    • In bioinformatics: 8,307
  • Year to date:
    • Site-wide: 127,036
  • Since beginning of last month:
    • Site-wide: 76,788

Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data

bioinformatics more details view paper
  • Downloaded 534 times
  • Download rankings, all-time:
    • Site-wide: 96,582
    • In bioinformatics: 8,574
  • Year to date:
    • Site-wide: 103,833
  • Since beginning of last month:
    • Site-wide: 37,356

Characterizing metabolism from bulk and single-cell RNA-seq data using METAFlux

bioinformatics more details view paper
  • Downloaded 521 times
  • Download rankings, all-time:
    • Site-wide: 99,376
    • In bioinformatics: 8,983
  • Year to date:
    • Site-wide: 61,936
  • Since beginning of last month:
    • Site-wide: 10,206

Spatially Interacting Phosphorylation Sites and Mutations in Cancer

bioinformatics more details view paper
  • Downloaded 517 times
  • Download rankings, all-time:
    • Site-wide: 100,461
    • In bioinformatics: 8,645
  • Year to date:
    • Site-wide: 186,822
  • Since beginning of last month:
    • Site-wide: 137,811

Capturing large genomic contexts for accurately predicting enhancer-promoter interactions

bioinformatics more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 108,566
    • In bioinformatics: 9,481
  • Year to date:
    • Site-wide: 180,208
  • Since beginning of last month:
    • Site-wide: 19,951

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data

bioinformatics more details view paper
  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 111,932
    • In bioinformatics: 9,535
  • Year to date:
    • Site-wide: 154,021
  • Since beginning of last month:
    • Site-wide: 65,860

Sensei: How many samples to tell evolution in single-cell studies?

bioinformatics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 112,407
    • In bioinformatics: 9,485
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 128,484

Ab initio Spillover Compensation in CyTOF Data

bioinformatics more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 130,882
    • In bioinformatics: 10,632
  • Year to date:
    • Site-wide: 91,698
  • Since beginning of last month:
    • Site-wide: 66,251

Targeting uncoupling of copy number and gene expression in cancers

cancer biology more details view paper
  • Downloaded 340 times
  • Download rankings, all-time:
    • Site-wide: 147,956
    • In cancer biology: 4,541
  • Year to date:
    • Site-wide: 88,209
  • Since beginning of last month:
    • Site-wide: 132,280

A role for KIF9 in male fertility

developmental biology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 157,792
    • In developmental biology: 4,207
  • Year to date:
    • Site-wide: 69,034
  • Since beginning of last month:
    • Site-wide: 121,663

ANTIBODY-INDEPENDENT ANTITUMOR EFFECTS OF CD32A-CHIMERIC RECEPTOR T CELLS: IMPLICATIONS FOR BREAST CANCER PROGNOSIS AND TREATMENT.

immunology more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 161,600
    • In immunology: 5,139
  • Year to date:
    • Site-wide: 43,371
  • Since beginning of last month:
    • Site-wide: 107,827

Characterizing transition cells in developmental processes from scRNA-seq data

bioinformatics more details view paper
  • Downloaded 215 times
  • Download rankings, all-time:
    • Site-wide: 183,853
    • In bioinformatics: 13,810
  • Year to date:
    • Site-wide: 180,055
  • Since beginning of last month:
    • Site-wide: 67,235

Monopogen: single nucleotide variant calling from single cell sequencing

bioinformatics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 184,939
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 14,318
  • Since beginning of last month:
    • Site-wide: 810

Integrated single-cell functional and molecular profiling of extracellular vesicle secretion in metastatic breast cancer

cancer biology more details view paper
  • Downloaded 145 times
  • Download rankings, all-time:
    • Site-wide: 199,249
    • In cancer biology: 6,198
  • Year to date:
    • Site-wide: 133,339
  • Since beginning of last month:
    • Site-wide: 46,873

novoRNABreak: local assembly for novel splice junction and fusion transcript detection from RNA-seq data

bioinformatics more details view paper
  • Downloaded 130 times
  • Download rankings, all-time:
    • Site-wide: 202,067
    • In bioinformatics: None
  • Year to date:
    • Site-wide: 8,317
  • Since beginning of last month:
    • Site-wide: 2,150

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