Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,027 bioRxiv papers from 295,009 authors.

Author: Jillian F Banfield

Rankings

  • All-time downloads: 21,503 (rank: 1,176 out of 295,009)
  • Categories:
    • bioinformatics: 3,609 (rank: 1,864 out of 25,687)
    • ecology: 726 (rank: 2,463 (tie) out of 11,709)
    • genomics: 1,045 (rank: 12,833 (tie) out of 33,595)
    • microbiology: 16,123 (rank: 25 out of 30,470)

Downloads per author, site-wide

Preprints

Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy

microbiology more details view paper
  • Downloaded 2,968 times
  • Download rankings, all-time:
    • Site-wide: 1,199 out of 67,027
    • In microbiology: 24 out of 5,400
  • Year to date:
    • Site-wide: 41,738 out of 67,027
  • Since beginning of last month:
    • Site-wide: 34,082 out of 67,027

In situ replication rates for uncultivated bacteria in microbial communities

bioinformatics more details view paper
  • Downloaded 2,326 times
  • Download rankings, all-time:
    • Site-wide: 1,866 out of 67,027
    • In bioinformatics: 376 out of 6,609
  • Year to date:
    • Site-wide: 29,369 out of 67,027
  • Since beginning of last month:
    • Site-wide: 36,200 out of 67,027

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

microbiology more details view paper
  • Downloaded 1,927 times
  • Download rankings, all-time:
    • Site-wide: 2,574 out of 67,027
    • In microbiology: 67 out of 5,400
  • Year to date:
    • Site-wide: 5,274 out of 67,027
  • Since beginning of last month:
    • Site-wide: 20,652 out of 67,027

Consistent metagenome-derived metrics verify and define bacterial species boundaries

microbiology more details view paper
  • Downloaded 1,320 times
  • Download rankings, all-time:
    • Site-wide: 4,872 out of 67,027
    • In microbiology: 164 out of 5,400
  • Year to date:
    • Site-wide: 1,181 out of 67,027
  • Since beginning of last month:
    • Site-wide: 7,379 out of 67,027

dRep: A tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes

bioinformatics more details view paper
  • Downloaded 1,175 times
  • Download rankings, all-time:
    • Site-wide: 5,909 out of 67,027
    • In bioinformatics: 1,117 out of 6,609
  • Year to date:
    • Site-wide: 32,114 out of 67,027
  • Since beginning of last month:
    • Site-wide: 17,222 out of 67,027

Genome-reconstruction for eukaryotes from complex natural microbial communities

genomics more details view paper
  • Downloaded 1,045 times
  • Download rankings, all-time:
    • Site-wide: 7,168 out of 67,027
    • In genomics: 1,161 out of 4,553
  • Year to date:
    • Site-wide: 31,356 out of 67,027
  • Since beginning of last month:
    • Site-wide: 21,105 out of 67,027

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria that may stimulate TLR4 receptors

microbiology more details view paper
  • Downloaded 1,031 times
  • Download rankings, all-time:
    • Site-wide: 7,311 out of 67,027
    • In microbiology: 299 out of 5,400
  • Year to date:
    • Site-wide: 1,807 out of 67,027
  • Since beginning of last month:
    • Site-wide: 5,957 out of 67,027

Biological capacities clearly define a major subdivision in Domain Bacteria

microbiology more details view paper
  • Downloaded 796 times
  • Download rankings, all-time:
    • Site-wide: 11,008 out of 67,027
    • In microbiology: 494 out of 5,400
  • Year to date:
    • Site-wide: 14,697 out of 67,027
  • Since beginning of last month:
    • Site-wide: 42,439 out of 67,027

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

microbiology more details view paper
  • Downloaded 774 times
  • Download rankings, all-time:
    • Site-wide: 11,493 out of 67,027
    • In microbiology: 526 out of 5,400
  • Year to date:
    • Site-wide: 3,002 out of 67,027
  • Since beginning of last month:
    • Site-wide: 5,672 out of 67,027

Niche differentiation is spatially and temporally regulated in the rhizosphere

ecology more details view paper
  • Downloaded 726 times
  • Download rankings, all-time:
    • Site-wide: 12,630 out of 67,027
    • In ecology: 325 out of 2,857
  • Year to date:
    • Site-wide: 3,370 out of 67,027
  • Since beginning of last month:
    • Site-wide: 10,545 out of 67,027

Dramatic expansion of microbial groups that shape the global sulfur cycle

microbiology more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 13,039 out of 67,027
    • In microbiology: 618 out of 5,400
  • Year to date:
    • Site-wide: 48,099 out of 67,027
  • Since beginning of last month:
    • Site-wide: 39,533 out of 67,027

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

microbiology more details view paper
  • Downloaded 699 times
  • Download rankings, all-time:
    • Site-wide: 13,332 out of 67,027
    • In microbiology: 634 out of 5,400
  • Year to date:
    • Site-wide: 9,746 out of 67,027
  • Since beginning of last month:
    • Site-wide: 11,712 out of 67,027

Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems

microbiology more details view paper
  • Downloaded 681 times
  • Download rankings, all-time:
    • Site-wide: 13,825 out of 67,027
    • In microbiology: 673 out of 5,400
  • Year to date:
    • Site-wide: 11,601 out of 67,027
  • Since beginning of last month:
    • Site-wide: 16,431 out of 67,027

Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome

microbiology more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 14,540 out of 67,027
    • In microbiology: 713 out of 5,400
  • Year to date:
    • Site-wide: 53,216 out of 67,027
  • Since beginning of last month:
    • Site-wide: 45,605 out of 67,027

An archaeal symbiont-host association from the deep terrestrial subsurface

microbiology more details view paper
  • Downloaded 615 times
  • Download rankings, all-time:
    • Site-wide: 15,970 out of 67,027
    • In microbiology: 807 out of 5,400
  • Year to date:
    • Site-wide: 13,811 out of 67,027
  • Since beginning of last month:
    • Site-wide: 21,442 out of 67,027

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially processed plant derived carbon

microbiology more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 17,241 out of 67,027
    • In microbiology: 876 out of 5,400
  • Year to date:
    • Site-wide: 52,632 out of 67,027
  • Since beginning of last month:
    • Site-wide: 49,327 out of 67,027

Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes

microbiology more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 17,394 out of 67,027
    • In microbiology: 886 out of 5,400
  • Year to date:
    • Site-wide: 20,239 out of 67,027
  • Since beginning of last month:
    • Site-wide: 14,662 out of 67,027

Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles

microbiology more details view paper
  • Downloaded 575 times
  • Download rankings, all-time:
    • Site-wide: 17,476 out of 67,027
    • In microbiology: 902 out of 5,400
  • Year to date:
    • Site-wide: 39,823 out of 67,027
  • Since beginning of last month:
    • Site-wide: 25,998 out of 67,027

Microbial diversity and metabolic potential in cyanotoxin producing cyanobacterial mats throughout a river network

microbiology more details view paper
  • Downloaded 475 times
  • Download rankings, all-time:
    • Site-wide: 22,291 out of 67,027
    • In microbiology: 1,219 out of 5,400
  • Year to date:
    • Site-wide: 30,834 out of 67,027
  • Since beginning of last month:
    • Site-wide: 26,493 out of 67,027

Soil bacterial populations are shaped by recombination and gene-specific selection across a meadow

microbiology more details view paper
  • Downloaded 462 times
  • Download rankings, all-time:
    • Site-wide: 23,047 out of 67,027
    • In microbiology: 1,276 out of 5,400
  • Year to date:
    • Site-wide: 7,187 out of 67,027
  • Since beginning of last month:
    • Site-wide: 16,686 out of 67,027

Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria

microbiology more details view paper
  • Downloaded 375 times
  • Download rankings, all-time:
    • Site-wide: 29,026 out of 67,027
    • In microbiology: 1,727 out of 5,400
  • Year to date:
    • Site-wide: 24,734 out of 67,027
  • Since beginning of last month:
    • Site-wide: 23,276 out of 67,027

Homologous recombination and transposon propagation shapes the population structure of an organism from the deep subsurface with minimal metabolism

microbiology more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 30,684 out of 67,027
    • In microbiology: 1,870 out of 5,400
  • Year to date:
    • Site-wide: 62,245 out of 67,027
  • Since beginning of last month:
    • Site-wide: 62,842 out of 67,027

Shifts in microbial transcription patterns prior to onset of Necrotizing enterocolitis may indicate low oxygen levels in the gut

microbiology more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 36,887 out of 67,027
    • In microbiology: 2,391 out of 5,400
  • Year to date:
    • Site-wide: 42,284 out of 67,027
  • Since beginning of last month:
    • Site-wide: 40,414 out of 67,027

Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

microbiology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 40,899 out of 67,027
    • In microbiology: 2,741 out of 5,400
  • Year to date:
    • Site-wide: 42,382 out of 67,027
  • Since beginning of last month:
    • Site-wide: 48,149 out of 67,027

Taxonomically and metabolically distinct microbial communities with depth and across a hillslope to riparian zone transect

bioinformatics more details view paper
  • Downloaded 108 times
  • Download rankings, all-time:
    • Site-wide: 60,813 out of 67,027
    • In bioinformatics: 6,214 out of 6,609
  • Year to date:
    • Site-wide: 45,618 out of 67,027
  • Since beginning of last month:
    • Site-wide: 22,230 out of 67,027

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News