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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,529 bioRxiv papers from 264,889 authors.

Author: Jillian F Banfield

Rankings

  • All-time downloads: 19,210 (rank: 1,170 out of 264,961)
  • Categories:
    • bioinformatics: 3,400 (rank: 1,794 (tie) out of 23,134)
    • ecology: 583 (rank: 2,721 (tie) out of 10,052)
    • genomics: 986 (rank: 12,183 (tie) out of 30,302)
    • microbiology: 14,241 (rank: 5 out of 26,266)

Downloads per author, site-wide

Preprints

Recovery of genomes from metagenomes via a dereplication, aggregation, and scoring strategy

microbiology more details view paper
  • Downloaded 2,931 times
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    • Site-wide: 1,037 out of 57,553
    • In microbiology: 19 out of 4,585
  • Year to date:
    • Site-wide: 36,992 out of 57,553
  • Since beginning of last month:
    • Site-wide: 20,580 out of 57,553

In situ replication rates for uncultivated bacteria in microbial communities

bioinformatics more details view paper
  • Downloaded 2,273 times
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    • Site-wide: 1,641 out of 57,553
    • In bioinformatics: 331 out of 5,869
  • Year to date:
    • Site-wide: 27,094 out of 57,553
  • Since beginning of last month:
    • Site-wide: 22,749 out of 57,553

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

microbiology more details view paper
  • Downloaded 1,807 times
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    • Site-wide: 2,425 out of 57,553
    • In microbiology: 60 out of 4,585
  • Year to date:
    • Site-wide: 4,463 out of 57,553
  • Since beginning of last month:
    • Site-wide: 7,759 out of 57,553

dRep: A tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes

bioinformatics more details view paper
  • Downloaded 1,127 times
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    • Site-wide: 5,312 out of 57,553
    • In bioinformatics: 1,026 out of 5,869
  • Year to date:
    • Site-wide: 29,219 out of 57,553
  • Since beginning of last month:
    • Site-wide: 21,026 out of 57,553

Consistent metagenome-derived metrics verify and define bacterial species boundaries

microbiology more details view paper
  • Downloaded 1,037 times
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    • Site-wide: 6,122 out of 57,553
    • In microbiology: 229 out of 4,585
  • Year to date:
    • Site-wide: 1,009 out of 57,553
  • Since beginning of last month:
    • Site-wide: 2,340 out of 57,553

Genome-reconstruction for eukaryotes from complex natural microbial communities

genomics more details view paper
  • Downloaded 986 times
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    • Site-wide: 6,628 out of 57,553
    • In genomics: 1,086 out of 4,033
  • Year to date:
    • Site-wide: 30,808 out of 57,553
  • Since beginning of last month:
    • Site-wide: 24,807 out of 57,553

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria that may stimulate TLR4 receptors

microbiology more details view paper
  • Downloaded 842 times
  • Download rankings, all-time:
    • Site-wide: 8,492 out of 57,553
    • In microbiology: 362 out of 4,585
  • Year to date:
    • Site-wide: 1,439 out of 57,553
  • Since beginning of last month:
    • Site-wide: 6,882 out of 57,553

Biological capacities clearly define a major subdivision in Domain Bacteria

microbiology more details view paper
  • Downloaded 723 times
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    • Site-wide: 10,657 out of 57,553
    • In microbiology: 480 out of 4,585
  • Year to date:
    • Site-wide: 12,999 out of 57,553
  • Since beginning of last month:
    • Site-wide: 10,636 out of 57,553

Dramatic expansion of microbial groups that shape the global sulfur cycle

microbiology more details view paper
  • Downloaded 673 times
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    • Site-wide: 11,788 out of 57,553
    • In microbiology: 540 out of 4,585
  • Year to date:
    • Site-wide: 44,741 out of 57,553
  • Since beginning of last month:
    • Site-wide: 40,735 out of 57,553

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

microbiology more details view paper
  • Downloaded 650 times
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    • Site-wide: 12,408 out of 57,553
    • In microbiology: 585 out of 4,585
  • Year to date:
    • Site-wide: 6,841 out of 57,553
  • Since beginning of last month:
    • Site-wide: 15,152 out of 57,553

Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome

microbiology more details view paper
  • Downloaded 636 times
  • Download rankings, all-time:
    • Site-wide: 12,743 out of 57,553
    • In microbiology: 610 out of 4,585
  • Year to date:
    • Site-wide: 43,409 out of 57,553
  • Since beginning of last month:
    • Site-wide: 41,526 out of 57,553

Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems

microbiology more details view paper
  • Downloaded 629 times
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    • Site-wide: 12,952 out of 57,553
    • In microbiology: 623 out of 4,585
  • Year to date:
    • Site-wide: 8,575 out of 57,553
  • Since beginning of last month:
    • Site-wide: 42,369 out of 57,553

Niche differentiation is spatially and temporally regulated in the rhizosphere

ecology more details view paper
  • Downloaded 583 times
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    • Site-wide: 14,372 out of 57,553
    • In ecology: 410 out of 2,428
  • Year to date:
    • Site-wide: 2,761 out of 57,553
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    • Site-wide: 5,103 out of 57,553

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially processed plant derived carbon

microbiology more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 15,180 out of 57,553
    • In microbiology: 764 out of 4,585
  • Year to date:
    • Site-wide: 42,905 out of 57,553
  • Since beginning of last month:
    • Site-wide: 45,398 out of 57,553

An archaeal symbiont-host association from the deep terrestrial subsurface

microbiology more details view paper
  • Downloaded 547 times
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    • Site-wide: 15,638 out of 57,553
    • In microbiology: 794 out of 4,585
  • Year to date:
    • Site-wide: 11,520 out of 57,553
  • Since beginning of last month:
    • Site-wide: 10,976 out of 57,553

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

microbiology more details view paper
  • Downloaded 532 times
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    • Site-wide: 16,208 out of 57,553
    • In microbiology: 824 out of 4,585
  • Year to date:
    • Site-wide: 3,220 out of 57,553
  • Since beginning of last month:
    • Site-wide: 4,486 out of 57,553

Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles

microbiology more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 16,416 out of 57,553
    • In microbiology: 840 out of 4,585
  • Year to date:
    • Site-wide: 38,318 out of 57,553
  • Since beginning of last month:
    • Site-wide: 32,354 out of 57,553

Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes

microbiology more details view paper
  • Downloaded 512 times
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    • Site-wide: 17,004 out of 57,553
    • In microbiology: 875 out of 4,585
  • Year to date:
    • Site-wide: 18,486 out of 57,553
  • Since beginning of last month:
    • Site-wide: 20,905 out of 57,553

Microbial diversity and metabolic potential in cyanotoxin producing cyanobacterial mats throughout a river network

microbiology more details view paper
  • Downloaded 434 times
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    • Site-wide: 20,686 out of 57,553
    • In microbiology: 1,118 out of 4,585
  • Year to date:
    • Site-wide: 26,204 out of 57,553
  • Since beginning of last month:
    • Site-wide: 27,494 out of 57,553

Homologous recombination and transposon propagation shapes the population structure of an organism from the deep subsurface with minimal metabolism

microbiology more details view paper
  • Downloaded 338 times
  • Download rankings, all-time:
    • Site-wide: 26,806 out of 57,553
    • In microbiology: 1,554 out of 4,585
  • Year to date:
    • Site-wide: 53,414 out of 57,553
  • Since beginning of last month:
    • Site-wide: 47,037 out of 57,553

Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria

microbiology more details view paper
  • Downloaded 321 times
  • Download rankings, all-time:
    • Site-wide: 28,086 out of 57,553
    • In microbiology: 1,688 out of 4,585
  • Year to date:
    • Site-wide: 21,900 out of 57,553
  • Since beginning of last month:
    • Site-wide: 30,823 out of 57,553

Soil bacterial populations are shaped by recombination and gene-specific selection across a meadow

microbiology more details view paper
  • Downloaded 310 times
  • Download rankings, all-time:
    • Site-wide: 29,002 out of 57,553
    • In microbiology: 1,764 out of 4,585
  • Year to date:
    • Site-wide: 7,849 out of 57,553
  • Since beginning of last month:
    • Site-wide: 558 out of 57,553

Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock

microbiology more details view paper
  • Downloaded 231 times
  • Download rankings, all-time:
    • Site-wide: 36,579 out of 57,553
    • In microbiology: 2,409 out of 4,585
  • Year to date:
    • Site-wide: 33,993 out of 57,553
  • Since beginning of last month:
    • Site-wide: 56,012 out of 57,553

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