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Author: Magnus Rattray

Rankings

  • All-time downloads: 17,857 (rank: 15,918 )
  • Categories:
    • bioinformatics: 8,521 (rank: 1,440 )
    • developmental biology: 3,296 (rank: 1,058 (tie) )
    • genomics: 1,705 (rank: 16,878 (tie) )
    • infectious diseases: 3,003 (rank: 17,156 (tie) )
    • respiratory medicine: 415 (rank: 2,433 (tie) )

Downloads per author, site-wide

Preprints

Longitudinal immune profiling reveals distinct features of COVID-19 pathogenesis

infectious diseases more details view paper
  • Downloaded 3,041 times
  • Download rankings, all-time:
    • Site-wide: 6,228
    • In infectious diseases: 1,164
  • Year to date:
    • Site-wide: 49,416
  • Since beginning of last month:
    • Site-wide: 30,372

Classifying cells with Scasat - a tool to analyse single-cell ATAC-seq

bioinformatics more details view paper
  • Downloaded 1,787 times
  • Download rankings, all-time:
    • Site-wide: 13,576
    • In bioinformatics: 1,395
  • Year to date:
    • Site-wide: 157,579
  • Since beginning of last month:
    • Site-wide: 162,433

HiChIP-Peaks: A HiChIP peak calling algorithm

bioinformatics more details view paper
  • Downloaded 1,488 times
  • Download rankings, all-time:
    • Site-wide: 17,898
    • In bioinformatics: 1,878
  • Year to date:
    • Site-wide: 131,510
  • Since beginning of last month:
    • Site-wide: 163,662

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

bioinformatics more details view paper
  • Downloaded 1,319 times
  • Download rankings, all-time:
    • Site-wide: 21,525
    • In bioinformatics: 2,332
  • Year to date:
    • Site-wide: 48,893
  • Since beginning of last month:
    • Site-wide: 72,792

Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis

genomics more details view paper
  • Downloaded 1,236 times
  • Download rankings, all-time:
    • Site-wide: 23,859
    • In genomics: 2,046
  • Year to date:
    • Site-wide: 95,700
  • Since beginning of last month:
    • Site-wide: 123,123

Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

developmental biology more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 28,470
    • In developmental biology: 497
  • Year to date:
    • Site-wide: 129,591
  • Since beginning of last month:
    • Site-wide: 131,908

GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

bioinformatics more details view paper
  • Downloaded 1,098 times
  • Download rankings, all-time:
    • Site-wide: 28,557
    • In bioinformatics: 2,966
  • Year to date:
    • Site-wide: 119,149
  • Since beginning of last month:
    • Site-wide: 131,773

BGP: Branched Gaussian processes for identifying gene-specific branching dynamics in single cell data

bioinformatics more details view paper
  • Downloaded 1,088 times
  • Download rankings, all-time:
    • Site-wide: 28,969
    • In bioinformatics: 3,004
  • Year to date:
    • Site-wide: 143,333
  • Since beginning of last month:
    • Site-wide: 169,881

Modulation of the promoter activation rate dictates the transcriptional response to graded BMP signaling levels in the Drosophila embryo

developmental biology more details view paper
  • Downloaded 1,085 times
  • Download rankings, all-time:
    • Site-wide: 29,104
    • In developmental biology: 513
  • Year to date:
    • Site-wide: 121,135
  • Since beginning of last month:
    • Site-wide: 155,905

Uncovering tissue-specific binding features from differential deep learning

bioinformatics more details view paper
  • Downloaded 1,022 times
  • Download rankings, all-time:
    • Site-wide: 31,749
    • In bioinformatics: 3,336
  • Year to date:
    • Site-wide: 119,764
  • Since beginning of last month:
    • Site-wide: 103,388

Inferring kinetic parameters of oscillatory gene regulation from single cell time series data

developmental biology more details view paper
  • Downloaded 516 times
  • Download rankings, all-time:
    • Site-wide: 80,858
    • In developmental biology: 2,087
  • Year to date:
    • Site-wide: 72,082
  • Since beginning of last month:
    • Site-wide: 58,097

Modelling global mRNA dynamics during Drosophila embryogenesis reveals a relationship between mRNA degradation and P-bodies

developmental biology more details view paper
  • Downloaded 510 times
  • Download rankings, all-time:
    • Site-wide: 82,113
    • In developmental biology: None
  • Year to date:
    • Site-wide: 3,525
  • Since beginning of last month:
    • Site-wide: 1,942

An active chromatin interactome in relevant cell lines elucidates biological mechanisms at genetic risk loci for dermatological traits

genomics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 85,412
    • In genomics: 5,348
  • Year to date:
    • Site-wide: 128,583
  • Since beginning of last month:
    • Site-wide: 139,925

OscoNet: Inferring oscillatory gene networks

bioinformatics more details view paper
  • Downloaded 469 times
  • Download rankings, all-time:
    • Site-wide: 90,085
    • In bioinformatics: 7,757
  • Year to date:
    • Site-wide: 137,603
  • Since beginning of last month:
    • Site-wide: 131,545

HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation

developmental biology more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 98,937
    • In developmental biology: 2,551
  • Year to date:
    • Site-wide: 145,308
  • Since beginning of last month:
    • Site-wide: 83,295

Sex differences in innate anti-viral immune responses to respiratory viruses

respiratory medicine more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 99,423
    • In respiratory medicine: 205
  • Year to date:
    • Site-wide: 98,397
  • Since beginning of last month:
    • Site-wide: 89,678

Scalable inference of transcriptional kinetic parameters from MS2 time series data

bioinformatics more details view paper
  • Downloaded 349 times
  • Download rankings, all-time:
    • Site-wide: 119,120
    • In bioinformatics: 9,458
  • Year to date:
    • Site-wide: 126,178
  • Since beginning of last month:
    • Site-wide: 175,284

Timing of neurogenesis through sequential accumulation of miR-9 due to additive expression of multiple alleles

developmental biology more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 126,299
    • In developmental biology: 3,899
  • Year to date:
    • Site-wide: 33,895
  • Since beginning of last month:
    • Site-wide: 54,277

Distinct cohorts of Aspergillus fumigatus transcription factors are required for epithelial damage occurring via contact- or soluble effector-mediated mechanisms

microbiology more details view paper
  • Downloaded 77 times
  • Download rankings, all-time:
    • Site-wide: 183,949
    • In microbiology: None
  • Year to date:
    • Site-wide: 42,269
  • Since beginning of last month:
    • Site-wide: 9,092

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