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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 55,243 bioRxiv papers from 254,835 authors.

Author: Fritz J. Sedlazeck

Rankings

  • All-time downloads: 41,102 (rank: 306 out of 254,835)
  • Categories:
    • bioinformatics: 24,142 (rank: 63 out of 22,193)
    • evolutionary biology: 611 (rank: 4,968 (tie) out of 13,668)
    • genetics: 1,826 (rank: 5,057 (tie) out of 23,960)
    • genomics: 14,523 (rank: 430 out of 28,596)

Downloads per author, site-wide

Preprints

A robust benchmark for germline structural variant detection

genomics more details view paper

No bioRxiv download data for this paper yet.

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 7,386 times
  • Download rankings, all-time:
    • Site-wide: 160 out of 55,243
    • In genomics: 49 out of 3,910
  • Year to date:
    • Site-wide: 17 out of 55,243
  • Since beginning of last month:
    • Site-wide: 391 out of 55,243

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,347 times
  • Download rankings, all-time:
    • Site-wide: 215 out of 55,243
    • In bioinformatics: 38 out of 5,706
  • Year to date:
    • Site-wide: 6,533 out of 55,243
  • Since beginning of last month:
    • Site-wide: 5,780 out of 55,243

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 4,981 times
  • Download rankings, all-time:
    • Site-wide: 346 out of 55,243
    • In bioinformatics: 70 out of 5,706
  • Year to date:
    • Site-wide: 1,866 out of 55,243
  • Since beginning of last month:
    • Site-wide: 5,199 out of 55,243

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 2,933 times
  • Download rankings, all-time:
    • Site-wide: 955 out of 55,243
    • In bioinformatics: 199 out of 5,706
  • Year to date:
    • Site-wide: 1,018 out of 55,243
  • Since beginning of last month:
    • Site-wide: 1,617 out of 55,243

Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants and mutations

genomics more details view paper
  • Downloaded 2,882 times
  • Download rankings, all-time:
    • Site-wide: 983 out of 55,243
    • In genomics: 240 out of 3,910
  • Year to date:
    • Site-wide: 98 out of 55,243
  • Since beginning of last month:
    • Site-wide: 117 out of 55,243

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 1,975 times
  • Download rankings, all-time:
    • Site-wide: 1,944 out of 55,243
    • In genomics: 425 out of 3,910
  • Year to date:
    • Site-wide: 334 out of 55,243
  • Since beginning of last month:
    • Site-wide: 2,771 out of 55,243

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
  • Downloaded 1,826 times
  • Download rankings, all-time:
    • Site-wide: 2,218 out of 55,243
    • In genetics: 213 out of 3,191
  • Year to date:
    • Site-wide: 6,051 out of 55,243
  • Since beginning of last month:
    • Site-wide: 11,269 out of 55,243

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 1,817 times
  • Download rankings, all-time:
    • Site-wide: 2,235 out of 55,243
    • In bioinformatics: 466 out of 5,706
  • Year to date:
    • Site-wide: 232 out of 55,243
  • Since beginning of last month:
    • Site-wide: 289 out of 55,243

Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
  • Downloaded 1,694 times
  • Download rankings, all-time:
    • Site-wide: 2,529 out of 55,243
    • In bioinformatics: 530 out of 5,706
  • Year to date:
    • Site-wide: 884 out of 55,243
  • Since beginning of last month:
    • Site-wide: 2,233 out of 55,243

xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
  • Downloaded 1,480 times
  • Download rankings, all-time:
    • Site-wide: 3,150 out of 55,243
    • In bioinformatics: 648 out of 5,706
  • Year to date:
    • Site-wide: 6,589 out of 55,243
  • Since beginning of last month:
    • Site-wide: 9,252 out of 55,243

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,479 times
  • Download rankings, all-time:
    • Site-wide: 3,152 out of 55,243
    • In bioinformatics: 649 out of 5,706
  • Year to date:
    • Site-wide: 33,090 out of 55,243
  • Since beginning of last month:
    • Site-wide: 19,595 out of 55,243

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,357 times
  • Download rankings, all-time:
    • Site-wide: 3,657 out of 55,243
    • In genomics: 680 out of 3,910
  • Year to date:
    • Site-wide: 31,193 out of 55,243
  • Since beginning of last month:
    • Site-wide: 40,447 out of 55,243

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 4,926 out of 55,243
    • In bioinformatics: 981 out of 5,706
  • Year to date:
    • Site-wide: 46,091 out of 55,243
  • Since beginning of last month:
    • Site-wide: 31,569 out of 55,243

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 852 times
  • Download rankings, all-time:
    • Site-wide: 7,694 out of 55,243
    • In bioinformatics: 1,414 out of 5,706
  • Year to date:
    • Site-wide: 26,739 out of 55,243
  • Since beginning of last month:
    • Site-wide: 19,077 out of 55,243

Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
  • Downloaded 611 times
  • Download rankings, all-time:
    • Site-wide: 12,403 out of 55,243
    • In evolutionary biology: 922 out of 3,821
  • Year to date:
    • Site-wide: 6,424 out of 55,243
  • Since beginning of last month:
    • Site-wide: 8,773 out of 55,243

Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
  • Downloaded 600 times
  • Download rankings, all-time:
    • Site-wide: 12,705 out of 55,243
    • In genomics: 1,704 out of 3,910
  • Year to date:
    • Site-wide: 1,914 out of 55,243
  • Since beginning of last month:
    • Site-wide: 5,644 out of 55,243

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 14,991 out of 55,243
    • In bioinformatics: 2,414 out of 5,706
  • Year to date:
    • Site-wide: 6,277 out of 55,243
  • Since beginning of last month:
    • Site-wide: 23,569 out of 55,243

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 15,722 out of 55,243
    • In bioinformatics: 2,486 out of 5,706
  • Year to date:
    • Site-wide: 47,959 out of 55,243
  • Since beginning of last month:
    • Site-wide: 32,909 out of 55,243

Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
  • Downloaded 391 times
  • Download rankings, all-time:
    • Site-wide: 21,326 out of 55,243
    • In bioinformatics: 3,099 out of 5,706
  • Year to date:
    • Site-wide: 3,996 out of 55,243
  • Since beginning of last month:
    • Site-wide: 3,335 out of 55,243

Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 25,701 out of 55,243
    • In genomics: 2,611 out of 3,910
  • Year to date:
    • Site-wide: 15,997 out of 55,243
  • Since beginning of last month:
    • Site-wide: 28,422 out of 55,243

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