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Author: Fritz J Sedlazeck

Rankings

  • All-time downloads: 174,717 (rank: 638 )
  • Categories:
    • bioinformatics: 54,814 (rank: 59 )
    • evolutionary biology: 1,031 (rank: 8,232 (tie) )
    • genetic and genomic medicine: 249 (rank: 12,286 (tie) )
    • genetics: 2,810 (rank: 7,288 (tie) )
    • genomics: 96,700 (rank: 111 )
    • microbiology: 789 (rank: 23,747 (tie) )
    • molecular biology: 18,324 (rank: 85 (tie) )

Downloads per author, site-wide

Preprints

The complete sequence of a human genome

genomics more details view paper
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    • Site-wide: 187
    • In genomics: 6
  • Year to date:
    • Site-wide: 56
  • Since beginning of last month:
    • Site-wide: 97

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

molecular biology more details view paper
  • Downloaded 18,324 times
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    • Site-wide: 500
    • In molecular biology: 7
  • Year to date:
    • Site-wide: 1,913
  • Since beginning of last month:
    • Site-wide: 5,229

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 13,589 times
  • Download rankings, all-time:
    • Site-wide: 731
    • In genomics: 41
  • Year to date:
    • Site-wide: 5,405
  • Since beginning of last month:
    • Site-wide: 10,368

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 9,273 times
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    • Site-wide: 1,183
    • In bioinformatics: 60
  • Year to date:
    • Site-wide: 6,396
  • Since beginning of last month:
    • Site-wide: 17,506

Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants, and mutations

genomics more details view paper
  • Downloaded 8,734 times
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    • Site-wide: 1,278
    • In genomics: 95
  • Year to date:
    • Site-wide: 9,833
  • Since beginning of last month:
    • Site-wide: 16,226

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,944 times
  • Download rankings, all-time:
    • Site-wide: 1,703
    • In bioinformatics: 98
  • Year to date:
    • Site-wide: 63,897
  • Since beginning of last month:
    • Site-wide: 133,769

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 6,423 times
  • Download rankings, all-time:
    • Site-wide: 1,901
    • In genomics: 151
  • Year to date:
    • Site-wide: 5,770
  • Since beginning of last month:
    • Site-wide: 9,044

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 5,964 times
  • Download rankings, all-time:
    • Site-wide: 2,100
    • In bioinformatics: 143
  • Year to date:
    • Site-wide: 50,255
  • Since beginning of last month:
    • Site-wide: 114,006

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 4,408 times
  • Download rankings, all-time:
    • Site-wide: 3,190
    • In bioinformatics: 252
  • Year to date:
    • Site-wide: 7,273
  • Since beginning of last month:
    • Site-wide: 25,927

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 4,150 times
  • Download rankings, all-time:
    • Site-wide: 3,455
    • In genomics: 338
  • Year to date:
    • Site-wide: 17,207
  • Since beginning of last month:
    • Site-wide: 29,564

Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
  • Downloaded 4,097 times
  • Download rankings, all-time:
    • Site-wide: 3,513
    • In bioinformatics: 301
  • Year to date:
    • Site-wide: 15,344
  • Since beginning of last month:
    • Site-wide: 21,927

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 4,005 times
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    • Site-wide: 3,637
    • In bioinformatics: 319
  • Year to date:
    • Site-wide: 57,237
  • Since beginning of last month:
    • Site-wide: 130,487

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 3,510 times
  • Download rankings, all-time:
    • Site-wide: 4,362
    • In bioinformatics: 408
  • Year to date:
    • Site-wide: 73,980
  • Since beginning of last month:
    • Site-wide: 142,695

A complete reference genome improves analysis of human genetic variation

genomics more details view paper
  • Downloaded 3,494 times
  • Download rankings, all-time:
    • Site-wide: 4,390
    • In genomics: 434
  • Year to date:
    • Site-wide: 943
  • Since beginning of last month:
    • Site-wide: 692

Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study

genomics more details view paper
  • Downloaded 3,024 times
  • Download rankings, all-time:
    • Site-wide: 5,425
    • In genomics: 539
  • Year to date:
    • Site-wide: 7,373
  • Since beginning of last month:
    • Site-wide: 29,675

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioinformatics more details view paper
  • Downloaded 2,935 times
  • Download rankings, all-time:
    • Site-wide: 5,686
    • In bioinformatics: 546
  • Year to date:
    • Site-wide: 1,929
  • Since beginning of last month:
    • Site-wide: 2,095

Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 2,907 times
  • Download rankings, all-time:
    • Site-wide: 5,758
    • In bioinformatics: 559
  • Year to date:
    • Site-wide: 30,707
  • Since beginning of last month:
    • Site-wide: 129,368

Benchmarking challenging small variants with linked and long reads

genomics more details view paper
  • Downloaded 2,730 times
  • Download rankings, all-time:
    • Site-wide: 6,297
    • In genomics: 636
  • Year to date:
    • Site-wide: 2,669
  • Since beginning of last month:
    • Site-wide: 1,233

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
  • Downloaded 2,460 times
  • Download rankings, all-time:
    • Site-wide: 7,358
    • In genetics: 306
  • Year to date:
    • Site-wide: 83,421
  • Since beginning of last month:
    • Site-wide: 137,639

xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
  • Downloaded 2,208 times
  • Download rankings, all-time:
    • Site-wide: 8,624
    • In bioinformatics: 953
  • Year to date:
    • Site-wide: 57,754
  • Since beginning of last month:
    • Site-wide: 39,770

Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes

genomics more details view paper
  • Downloaded 2,193 times
  • Download rankings, all-time:
    • Site-wide: 8,704
    • In genomics: 869
  • Year to date:
    • Site-wide: 1,731
  • Since beginning of last month:
    • Site-wide: 1,176

Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
  • Downloaded 1,923 times
  • Download rankings, all-time:
    • Site-wide: 10,572
    • In genomics: 1,044
  • Year to date:
    • Site-wide: 78,479
  • Since beginning of last month:
    • Site-wide: 134,228

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,788 times
  • Download rankings, all-time:
    • Site-wide: 11,808
    • In bioinformatics: 1,307
  • Year to date:
    • Site-wide: 116,824
  • Since beginning of last month:
    • Site-wide: 157,723

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,762 times
  • Download rankings, all-time:
    • Site-wide: 12,049
    • In genomics: 1,193
  • Year to date:
    • Site-wide: 125,460
  • Since beginning of last month:
    • Site-wide: 137,893

Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

genomics more details view paper
  • Downloaded 1,526 times
  • Download rankings, all-time:
    • Site-wide: 15,004
    • In genomics: 1,470
  • Year to date:
    • Site-wide: 91,648
  • Since beginning of last month:
    • Site-wide: 126,159

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

genomics more details view paper
  • Downloaded 1,332 times
  • Download rankings, all-time:
    • Site-wide: 18,496
    • In genomics: 1,747
  • Year to date:
    • Site-wide: 30,532
  • Since beginning of last month:
    • Site-wide: 46,361

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,285 times
  • Download rankings, all-time:
    • Site-wide: 19,540
    • In bioinformatics: 2,213
  • Year to date:
    • Site-wide: 148,492
  • Since beginning of last month:
    • Site-wide: 149,911

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 1,211 times
  • Download rankings, all-time:
    • Site-wide: 21,398
    • In bioinformatics: 2,423
  • Year to date:
    • Site-wide: 72,453
  • Since beginning of last month:
    • Site-wide: 113,929

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 1,071 times
  • Download rankings, all-time:
    • Site-wide: 25,783
    • In bioinformatics: 2,871
  • Year to date:
    • Site-wide: 91,439
  • Since beginning of last month:
    • Site-wide: 114,186

Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
  • Downloaded 1,031 times
  • Download rankings, all-time:
    • Site-wide: 27,288
    • In evolutionary biology: 1,108
  • Year to date:
    • Site-wide: 129,132
  • Since beginning of last month:
    • Site-wide: 136,087

High resolution copy number inference in cancer using short-molecule nanopore sequencing

genomics more details view paper
  • Downloaded 891 times
  • Download rankings, all-time:
    • Site-wide: 33,845
    • In genomics: 2,843
  • Year to date:
    • Site-wide: 9,958
  • Since beginning of last month:
    • Site-wide: 60,782

The population genomics of structural variation in a songbird genus

genomics more details view paper
  • Downloaded 890 times
  • Download rankings, all-time:
    • Site-wide: 33,872
    • In genomics: 2,849
  • Year to date:
    • Site-wide: 107,470
  • Since beginning of last month:
    • Site-wide: 131,329

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

microbiology more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 40,247
    • In microbiology: 2,410
  • Year to date:
    • Site-wide: 25,589
  • Since beginning of last month:
    • Site-wide: 69,934

Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
  • Downloaded 775 times
  • Download rankings, all-time:
    • Site-wide: 41,263
    • In bioinformatics: 4,351
  • Year to date:
    • Site-wide: 106,777
  • Since beginning of last month:
    • Site-wide: 55,874

Multiethnic catalog of structural variants and their translational impact for disease phenotypes across 19,652 genomes

genomics more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 43,064
    • In genomics: 3,406
  • Year to date:
    • Site-wide: 68,159
  • Since beginning of last month:
    • Site-wide: 72,954

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 672 times
  • Download rankings, all-time:
    • Site-wide: 50,519
    • In bioinformatics: 5,100
  • Year to date:
    • Site-wide: 151,576
  • Since beginning of last month:
    • Site-wide: 164,500

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

bioinformatics more details view paper
  • Downloaded 593 times
  • Download rankings, all-time:
    • Site-wide: 59,536
    • In bioinformatics: 5,848
  • Year to date:
    • Site-wide: 12,216
  • Since beginning of last month:
    • Site-wide: 22,368

Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
  • Downloaded 560 times
  • Download rankings, all-time:
    • Site-wide: 63,945
    • In genomics: 4,532
  • Year to date:
    • Site-wide: 147,458
  • Since beginning of last month:
    • Site-wide: 154,168

Mining Thousands of Genomes to Classify Somatic and Pathogenic Structural Variants

bioinformatics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 73,777
    • In bioinformatics: 6,866
  • Year to date:
    • Site-wide: 16,078
  • Since beginning of last month:
    • Site-wide: 44,651

SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

bioinformatics more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 90,492
    • In bioinformatics: 7,998
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    • Site-wide: 66,730
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Accurate profiling of forensic autosomal STRs using the Oxford Nanopore Technologies MinION device

genetics more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 103,688
    • In genetics: 4,286
  • Year to date:
    • Site-wide: 27,372
  • Since beginning of last month:
    • Site-wide: 28,929

Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

genomics more details view paper
  • Downloaded 330 times
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    • Site-wide: 108,890
    • In genomics: 6,367
  • Year to date:
    • Site-wide: 29,991
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    • Site-wide: 27,279

Rescuing Low Frequency Variants within Intra-Host Viral Populations directly from Oxford Nanopore sequencing data

bioinformatics more details view paper
  • Downloaded 264 times
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    • Site-wide: 126,058
    • In bioinformatics: 10,095
  • Year to date:
    • Site-wide: 40,950
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    • Site-wide: 75,149

Comprehensive analysis of GBA using a novel algorithm for Illumina whole-genome sequence data or targeted Nanopore sequencing

genetic and genomic medicine more details view paper
  • Downloaded 249 times
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    • Site-wide: 130,055
    • In genetic and genomic medicine: 756
  • Year to date:
    • Site-wide: 44,136
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    • Site-wide: 3,801

SVhound: Detection of future Structural Variation hotspots

genomics more details view paper
  • Downloaded 232 times
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    • Site-wide: 134,240
    • In genomics: 7,183
  • Year to date:
    • Site-wide: 48,205
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    • Site-wide: 75,108

Fully resolved assembly of Cryptosporidium parvum

genomics more details view paper
  • Downloaded 178 times
  • Download rankings, all-time:
    • Site-wide: 147,250
    • In genomics: 7,560
  • Year to date:
    • Site-wide: 66,665
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    • Site-wide: 60,215

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