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Author: Fritz J. Sedlazeck

Rankings

  • All-time downloads: 111,738 (rank: 787 )
  • Categories:
    • bioinformatics: 48,389 (rank: 60 )
    • evolutionary biology: 968 (rank: 6,534 (tie) )
    • genetics: 2,350 (rank: 7,687 (tie) )
    • genomics: 42,659 (rank: 180 )
    • microbiology: 509 (rank: 24,731 (tie) )
    • molecular biology: 16,863 (rank: 69 (tie) )

Downloads per author, site-wide

Preprints

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

molecular biology more details view paper
  • Downloaded 16,863 times
  • Download rankings, all-time:
    • Site-wide: 387
    • In molecular biology: 5
  • Year to date:
    • Site-wide: 1,074
  • Since beginning of last month:
    • Site-wide: 1,174

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 12,841 times
  • Download rankings, all-time:
    • Site-wide: 535
    • In genomics: 37
  • Year to date:
    • Site-wide: 3,517
  • Since beginning of last month:
    • Site-wide: 3,224

Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
  • Downloaded 8,533 times
  • Download rankings, all-time:
    • Site-wide: 928
    • In bioinformatics: 54
  • Year to date:
    • Site-wide: 6,868
  • Since beginning of last month:
    • Site-wide: 9,453

Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants, and mutations

genomics more details view paper
  • Downloaded 8,232 times
  • Download rankings, all-time:
    • Site-wide: 967
    • In genomics: 87
  • Year to date:
    • Site-wide: 5,698
  • Since beginning of last month:
    • Site-wide: 6,137

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
  • Downloaded 6,804 times
  • Download rankings, all-time:
    • Site-wide: 1,225
    • In bioinformatics: 83
  • Year to date:
    • Site-wide: 30,146
  • Since beginning of last month:
    • Site-wide: 29,308

Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 5,783 times
  • Download rankings, all-time:
    • Site-wide: 1,528
    • In bioinformatics: 114
  • Year to date:
    • Site-wide: 30,141
  • Since beginning of last month:
    • Site-wide: 21,828

A robust benchmark for germline structural variant detection

genomics more details view paper
  • Downloaded 5,670 times
  • Download rankings, all-time:
    • Site-wide: 1,581
    • In genomics: 150
  • Year to date:
    • Site-wide: 4,772
  • Since beginning of last month:
    • Site-wide: 4,541

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
  • Downloaded 3,835 times
  • Download rankings, all-time:
    • Site-wide: 2,715
    • In bioinformatics: 258
  • Year to date:
    • Site-wide: 40,840
  • Since beginning of last month:
    • Site-wide: 51,854

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
  • Downloaded 3,808 times
  • Download rankings, all-time:
    • Site-wide: 2,740
    • In genomics: 323
  • Year to date:
    • Site-wide: 8,332
  • Since beginning of last month:
    • Site-wide: 9,883

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 3,780 times
  • Download rankings, all-time:
    • Site-wide: 2,768
    • In bioinformatics: 269
  • Year to date:
    • Site-wide: 4,953
  • Since beginning of last month:
    • Site-wide: 7,915

Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
  • Downloaded 3,697 times
  • Download rankings, all-time:
    • Site-wide: 2,870
    • In bioinformatics: 282
  • Year to date:
    • Site-wide: 10,553
  • Since beginning of last month:
    • Site-wide: 7,869

Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
  • Downloaded 3,404 times
  • Download rankings, all-time:
    • Site-wide: 3,241
    • In bioinformatics: 334
  • Year to date:
    • Site-wide: 23,599
  • Since beginning of last month:
    • Site-wide: 17,092

Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
  • Downloaded 2,583 times
  • Download rankings, all-time:
    • Site-wide: 4,798
    • In bioinformatics: 536
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
  • Downloaded 2,350 times
  • Download rankings, all-time:
    • Site-wide: 5,534
    • In genetics: 265
  • Year to date:
    • Site-wide: 39,541
  • Since beginning of last month:
    • Site-wide: 38,557

Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study

genomics more details view paper
  • Downloaded 2,331 times
  • Download rankings, all-time:
    • Site-wide: 5,600
    • In genomics: 652
  • Year to date:
    • Site-wide: 9,180
  • Since beginning of last month:
    • Site-wide: None

xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
  • Downloaded 2,041 times
  • Download rankings, all-time:
    • Site-wide: 6,772
    • In bioinformatics: 813
  • Year to date:
    • Site-wide: 39,616
  • Since beginning of last month:
    • Site-wide: 33,835

Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
  • Downloaded 1,800 times
  • Download rankings, all-time:
    • Site-wide: 8,175
    • In genomics: 919
  • Year to date:
    • Site-wide: 44,845
  • Since beginning of last month:
    • Site-wide: 27,050

GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
  • Downloaded 1,709 times
  • Download rankings, all-time:
    • Site-wide: 8,869
    • In bioinformatics: 1,084
  • Year to date:
    • Site-wide: 70,633
  • Since beginning of last month:
    • Site-wide: 49,819

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
  • Downloaded 1,687 times
  • Download rankings, all-time:
    • Site-wide: 9,065
    • In genomics: 1,020
  • Year to date:
    • Site-wide: 92,120
  • Since beginning of last month:
    • Site-wide: 63,524

Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

genomics more details view paper
  • Downloaded 1,420 times
  • Download rankings, all-time:
    • Site-wide: 11,649
    • In genomics: 1,297
  • Year to date:
    • Site-wide: 54,618
  • Since beginning of last month:
    • Site-wide: 50,103

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioinformatics more details view paper
  • Downloaded 1,404 times
  • Download rankings, all-time:
    • Site-wide: 11,870
    • In bioinformatics: 1,474
  • Year to date:
    • Site-wide: 1,347
  • Since beginning of last month:
    • Site-wide: 792

Benchmarking challenging small variants with linked and long reads

genomics more details view paper
  • Downloaded 1,384 times
  • Download rankings, all-time:
    • Site-wide: 12,127
    • In genomics: 1,340
  • Year to date:
    • Site-wide: 3,182
  • Since beginning of last month:
    • Site-wide: 2,626

LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
  • Downloaded 1,238 times
  • Download rankings, all-time:
    • Site-wide: 14,332
    • In bioinformatics: 1,765
  • Year to date:
    • Site-wide: 87,443
  • Since beginning of last month:
    • Site-wide: 53,755

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

genomics more details view paper
  • Downloaded 1,097 times
  • Download rankings, all-time:
    • Site-wide: 17,210
    • In genomics: 1,797
  • Year to date:
    • Site-wide: 13,594
  • Since beginning of last month:
    • Site-wide: 12,858

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
  • Downloaded 1,068 times
  • Download rankings, all-time:
    • Site-wide: 17,883
    • In bioinformatics: 2,174
  • Year to date:
    • Site-wide: 59,502
  • Since beginning of last month:
    • Site-wide: 62,837

Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
  • Downloaded 968 times
  • Download rankings, all-time:
    • Site-wide: 20,672
    • In evolutionary biology: 935
  • Year to date:
    • Site-wide: 63,955
  • Since beginning of last month:
    • Site-wide: 73,387

SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 20,923
    • In bioinformatics: 2,518
  • Year to date:
    • Site-wide: 67,062
  • Since beginning of last month:
    • Site-wide: 60,714

The population genomics of structural variation in a songbird genus

genomics more details view paper
  • Downloaded 797 times
  • Download rankings, all-time:
    • Site-wide: 27,246
    • In genomics: 2,568
  • Year to date:
    • Site-wide: 79,271
  • Since beginning of last month:
    • Site-wide: None

Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
  • Downloaded 666 times
  • Download rankings, all-time:
    • Site-wide: 34,848
    • In bioinformatics: 3,910
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
  • Downloaded 630 times
  • Download rankings, all-time:
    • Site-wide: 37,523
    • In bioinformatics: 4,149
  • Year to date:
    • Site-wide: 82,705
  • Since beginning of last month:
    • Site-wide: 105,422

Multiethnic catalog of structural variants and their translational impact for disease phenotypes across 19,652 genomes

genomics more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 39,581
    • In genomics: 3,332
  • Year to date:
    • Site-wide: 51,659
  • Since beginning of last month:
    • Site-wide: 31,448

Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 48,538
    • In genomics: 3,871
  • Year to date:
    • Site-wide: 89,553
  • Since beginning of last month:
    • Site-wide: 79,534

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

microbiology more details view paper
  • Downloaded 509 times
  • Download rankings, all-time:
    • Site-wide: 48,784
    • In microbiology: 3,076
  • Year to date:
    • Site-wide: 14,168
  • Since beginning of last month:
    • Site-wide: 16,176

High resolution copy number inference in cancer using short-molecule nanopore sequencing

genomics more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 52,511
    • In genomics: 4,093
  • Year to date:
    • Site-wide: 3,302
  • Since beginning of last month:
    • Site-wide: None

SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

bioinformatics more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 90,171
    • In bioinformatics: 7,980
  • Year to date:
    • Site-wide: 52,234
  • Since beginning of last month:
    • Site-wide: 41,621

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