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Author: Fritz J. Sedlazeck

Rankings

  • All-time downloads: 105,170 (rank: 761 out of 511,573)
  • Categories:
    • bioinformatics: 45,964 (rank: 60 out of 36,919)
    • evolutionary biology: 931 (rank: 6,129 (tie) out of 22,295)
    • genetics: 2,287 (rank: 7,401 (tie) out of 38,716)
    • genomics: 39,760 (rank: 175 out of 45,729)
    • microbiology: 359 (rank: 29,051 (tie) out of 52,296)
    • molecular biology: 15,869 (rank: 67 (tie) out of 24,260)

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Preprints

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

molecular biology more details view paper
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Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
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Efficient de novo assembly of eleven human genomes using PromethION sequencing and a novel nanopore toolkit

bioinformatics more details view paper
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Targeted Nanopore Sequencing with Cas9 for studies of methylation, structural variants, and mutations

genomics more details view paper
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Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

bioinformatics more details view paper
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Accurate detection of complex structural variations using single molecule sequencing

bioinformatics more details view paper
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A robust benchmark for germline structural variant detection

genomics more details view paper
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Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

bioinformatics more details view paper
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Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

genomics more details view paper
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Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers

bioinformatics more details view paper
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Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
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Fast and accurate reference-guided scaffolding of draft genomes

bioinformatics more details view paper
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Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

bioinformatics more details view paper
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    • In bioinformatics: 501 out of 9,592
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Detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

genetics more details view paper
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Multi-Platform Assessment of DNA Sequencing Performance using Human and Bacterial Reference Genomes in the ABRF Next-Generation Sequencing Study

genomics more details view paper
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xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments

bioinformatics more details view paper
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Paragraph: A graph-based structural variant genotyper for short-read sequence data

genomics more details view paper
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GenomeScope: Fast reference-free genome profiling from short reads

bioinformatics more details view paper
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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

genomics more details view paper
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Transient structural variations alter gene expression and quantitative traits in Schizosaccharomyces pombe.

genomics more details view paper
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LRSim: a Linked Reads Simulator generating insights for better genome partitioning

bioinformatics more details view paper
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    • In bioinformatics: 1,651 out of 9,592
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SplitThreader: Exploration and analysis of rearrangements in cancer genomes

bioinformatics more details view paper
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Ancestral admixture is the main determinant of global biodiversity in fission yeast

evolutionary biology more details view paper
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    • In evolutionary biology: 901 out of 6,198
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SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

bioinformatics more details view paper
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Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

genomics more details view paper
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Benchmarking challenging small variants with linked and long reads

genomics more details view paper
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The population genomics of structural variation in a songbird genus

genomics more details view paper
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Evaluation of computational genotyping of Structural Variations for clinical diagnoses.

bioinformatics more details view paper
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Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

bioinformatics more details view paper
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Multiethnic catalog of structural variants and their translational impact for disease phenotypes across 19,652 genomes

genomics more details view paper
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Atlas-CNV: a validated approach to call Single-Exon CNVs in the eMERGESeq gene panel

genomics more details view paper
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precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioinformatics more details view paper
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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

microbiology more details view paper
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SVCollector: Optimized sample selection for cost-efficient long-read population sequencing

bioinformatics more details view paper
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