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Author: Serghei Mangul

Rankings

  • All-time downloads: 49,954 (rank: 4,341 )
  • Categories:
    • bioinformatics: 25,192 (rank: 177 )
    • genetics: 6,396 (rank: 3,539 (tie) )
    • genomics: 5,874 (rank: 4,563 (tie) )
    • immunology: 4,764 (rank: 2,872 (tie) )
    • microbiology: 6,409 (rank: 2,878 )
    • scientific communication and education: 1,319 (rank: 770 )

Downloads per author, site-wide

Preprints

A comprehensive map of genetic variation in the world's largest ethnic group - Han Chinese

genetics more details view paper
  • Downloaded 6,396 times
  • Download rankings, all-time:
    • Site-wide: 2,040
    • In genetics: 58
  • Year to date:
    • Site-wide: 20,841
  • Since beginning of last month:
    • Site-wide: 24,840

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 5,564 times
  • Download rankings, all-time:
    • Site-wide: 2,457
    • In bioinformatics: 176
  • Year to date:
    • Site-wide: 153,148
  • Since beginning of last month:
    • Site-wide: 51,640

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
  • Downloaded 4,764 times
  • Download rankings, all-time:
    • Site-wide: 3,043
    • In immunology: 119
  • Year to date:
    • Site-wide: 38,634
  • Since beginning of last month:
    • Site-wide: 24,841

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
  • Downloaded 4,215 times
  • Download rankings, all-time:
    • Site-wide: 3,577
    • In microbiology: 248
  • Year to date:
    • Site-wide: 28,890
  • Since beginning of last month:
    • Site-wide: 22,007

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper
  • Downloaded 2,941 times
  • Download rankings, all-time:
    • Site-wide: 5,979
    • In bioinformatics: 567
  • Year to date:
    • Site-wide: 25,278
  • Since beginning of last month:
    • Site-wide: 7,565

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
  • Downloaded 2,858 times
  • Download rankings, all-time:
    • Site-wide: 6,216
    • In genomics: 609
  • Year to date:
    • Site-wide: 109,206
  • Since beginning of last month:
    • Site-wide: 100,678

UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
  • Downloaded 2,816 times
  • Download rankings, all-time:
    • Site-wide: 6,352
    • In bioinformatics: 614
  • Year to date:
    • Site-wide: 122,378
  • Since beginning of last month:
    • Site-wide: 100,276

Cell type specific genetic regulation of gene expression across human tissues

genomics more details view paper
  • Downloaded 2,802 times
  • Download rankings, all-time:
    • Site-wide: 6,387
    • In genomics: 623
  • Year to date:
    • Site-wide: 64,797
  • Since beginning of last month:
    • Site-wide: 54,168

PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization

microbiology more details view paper
  • Downloaded 2,194 times
  • Download rankings, all-time:
    • Site-wide: 9,142
    • In microbiology: 545
  • Year to date:
    • Site-wide: 154,118
  • Since beginning of last month:
    • Site-wide: 83,147

Critical Assessment of Metagenome Interpretation - the second round of challenges

bioinformatics more details view paper
  • Downloaded 2,031 times
  • Download rankings, all-time:
    • Site-wide: 10,233
    • In bioinformatics: 1,125
  • Year to date:
    • Site-wide: 2,999
  • Since beginning of last month:
    • Site-wide: 3,136

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

bioinformatics more details view paper
  • Downloaded 1,754 times
  • Download rankings, all-time:
    • Site-wide: 12,741
    • In bioinformatics: 1,389
  • Year to date:
    • Site-wide: 70,379
  • Since beginning of last month:
    • Site-wide: 28,704

Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
  • Downloaded 1,554 times
  • Download rankings, all-time:
    • Site-wide: 15,317
    • In bioinformatics: 1,690
  • Year to date:
    • Site-wide: 159,494
  • Since beginning of last month:
    • Site-wide: 105,834

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
  • Downloaded 1,472 times
  • Download rankings, all-time:
    • Site-wide: 16,646
    • In bioinformatics: 1,847
  • Year to date:
    • Site-wide: 161,944
  • Since beginning of last month:
    • Site-wide: 98,414

The Gene Expression Deconvolution Interactive Tool (GEDIT): Accurate Cell Type Quantification from Gene Expression Data

bioinformatics more details view paper
  • Downloaded 1,276 times
  • Download rankings, all-time:
    • Site-wide: 20,635
    • In bioinformatics: 2,296
  • Year to date:
    • Site-wide: 68,361
  • Since beginning of last month:
    • Site-wide: 106,607

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
  • Downloaded 1,109 times
  • Download rankings, all-time:
    • Site-wide: 25,579
    • In bioinformatics: 2,831
  • Year to date:
    • Site-wide: 112,741
  • Since beginning of last month:
    • Site-wide: 100,349

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
  • Downloaded 1,028 times
  • Download rankings, all-time:
    • Site-wide: 28,627
    • In bioinformatics: 3,129
  • Year to date:
    • Site-wide: 71,839
  • Since beginning of last month:
    • Site-wide: 99,058

Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
  • Downloaded 1,008 times
  • Download rankings, all-time:
    • Site-wide: 29,507
    • In scientific communication and education: 211
  • Year to date:
    • Site-wide: 150,189
  • Since beginning of last month:
    • Site-wide: 103,321

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
  • Downloaded 967 times
  • Download rankings, all-time:
    • Site-wide: 31,361
    • In bioinformatics: 3,411
  • Year to date:
    • Site-wide: 121,801
  • Since beginning of last month:
    • Site-wide: 100,350

Reference-free comparison of microbial communities via de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 895 times
  • Download rankings, all-time:
    • Site-wide: 35,158
    • In bioinformatics: 3,770
  • Year to date:
    • Site-wide: 160,412
  • Since beginning of last month:
    • Site-wide: 125,573

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
  • Downloaded 849 times
  • Download rankings, all-time:
    • Site-wide: 37,931
    • In bioinformatics: 4,016
  • Year to date:
    • Site-wide: 134,792
  • Since beginning of last month:
    • Site-wide: 108,195

Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples

bioinformatics more details view paper
  • Downloaded 671 times
  • Download rankings, all-time:
    • Site-wide: 52,991
    • In bioinformatics: 5,272
  • Year to date:
    • Site-wide: 145,865
  • Since beginning of last month:
    • Site-wide: 77,702

Virtual meetings promise to eliminate the geographical and administrative barriers and increase accessibility, diversity, and inclusivity

scientific communication and education more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 118,380
    • In scientific communication and education: 639
  • Year to date:
    • Site-wide: 127,063
  • Since beginning of last month:
    • Site-wide: 30,178

The systematic assessment of completeness of public metadata accompanying omics studies

bioinformatics more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 130,970
    • In bioinformatics: 10,432
  • Year to date:
    • Site-wide: 21,314
  • Since beginning of last month:
    • Site-wide: 2,763

Seeing beyond the target: Leveraging off-target reads in targeted clinical tumor sequencing to identify prognostic biomarkers

genomics more details view paper
  • Downloaded 214 times
  • Download rankings, all-time:
    • Site-wide: 144,668
    • In genomics: 7,511
  • Year to date:
    • Site-wide: 58,820
  • Since beginning of last month:
    • Site-wide: 94,748

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