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Author: Josh Stuart

Rankings

  • All-time downloads: 16,044 (rank: 9,053 (tie) out of 512,740)
  • Categories:
    • bioinformatics: 4,138 (rank: 2,632 out of 36,949)
    • cancer biology: 9,311 (rank: 190 out of 31,551)
    • developmental biology: 1,534 (rank: 1,660 (tie) out of 17,444)
    • genomics: 265 (rank: 39,814 (tie) out of 45,789)
    • systems biology: 796 (rank: 4,747 (tie) out of 12,917)

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Preprints

Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures

bioinformatics more details view paper

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Pan-cancer analysis of whole genomes

cancer biology more details view paper
  • Downloaded 7,779 times
  • Download rankings, all-time:
    • Site-wide: 887 out of 118,896
    • In cancer biology: 10 out of 3,762
  • Year to date:
    • Site-wide: 4,610 out of 118,896
  • Since beginning of last month:
    • Site-wide: 19,626 out of 118,896

Creating Standards for Evaluating Tumour Subclonal Reconstruction

bioinformatics more details view paper
  • Downloaded 1,929 times
  • Download rankings, all-time:
    • Site-wide: 6,405 out of 118,896
    • In bioinformatics: 830 out of 9,616
  • Year to date:
    • Site-wide: 30,227 out of 118,896
  • Since beginning of last month:
    • Site-wide: 36,578 out of 118,896

Modeling human TBX5 haploinsufficiency predicts regulatory networks for congenital heart disease

developmental biology more details view paper
  • Downloaded 1,534 times
  • Download rankings, all-time:
    • Site-wide: 9,040 out of 118,896
    • In developmental biology: 127 out of 3,131
  • Year to date:
    • Site-wide: 7,064 out of 118,896
  • Since beginning of last month:
    • Site-wide: 11,003 out of 118,896

Pathway and network analysis of more than 2,500 whole cancer genomes

cancer biology more details view paper
  • Downloaded 1,532 times
  • Download rankings, all-time:
    • Site-wide: 9,061 out of 118,896
    • In cancer biology: 181 out of 3,762
  • Year to date:
    • Site-wide: 33,921 out of 118,896
  • Since beginning of last month:
    • Site-wide: 78,283 out of 118,896

Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection

bioinformatics more details view paper
  • Downloaded 904 times
  • Download rankings, all-time:
    • Site-wide: 19,858 out of 118,896
    • In bioinformatics: 2,485 out of 9,616
  • Year to date:
    • Site-wide: 62,401 out of 118,896
  • Since beginning of last month:
    • Site-wide: 50,239 out of 118,896

Tracing co-regulatory network dynamics in noisy, single-cell transcriptome trajectories

bioinformatics more details view paper
  • Downloaded 858 times
  • Download rankings, all-time:
    • Site-wide: 21,446 out of 118,896
    • In bioinformatics: 2,667 out of 9,616
  • Year to date:
    • Site-wide: 102,508 out of 118,896
  • Since beginning of last month:
    • Site-wide: 111,218 out of 118,896

Biological Process Activity Transformation of Single Cell Gene Expression for Cross-Species Alignment

systems biology more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 39,756 out of 118,896
    • In systems biology: 974 out of 2,648
  • Year to date:
    • Site-wide: 72,964 out of 118,896
  • Since beginning of last month:
    • Site-wide: 63,652 out of 118,896

Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

genomics more details view paper
  • Downloaded 265 times
  • Download rankings, all-time:
    • Site-wide: 78,168 out of 118,896
    • In genomics: 5,183 out of 6,453
  • Year to date:
    • Site-wide: 108,000 out of 118,896
  • Since beginning of last month:
    • Site-wide: 107,939 out of 118,896

Valection: Design Optimization for Validation and Verification Studies

bioinformatics more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 78,883 out of 118,896
    • In bioinformatics: 7,263 out of 9,616
  • Year to date:
    • Site-wide: 111,240 out of 118,896
  • Since beginning of last month:
    • Site-wide: 110,812 out of 118,896

Using Transcriptional Signatures to Find Cancer Drivers with LURE

systems biology more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 80,171 out of 118,896
    • In systems biology: 1,991 out of 2,648
  • Year to date:
    • Site-wide: 84,362 out of 118,896
  • Since beginning of last month:
    • Site-wide: 57,019 out of 118,896

Highly Accurate Cancer Phenotype Prediction with AKLIMATE, a Stacked Kernel Learner Integrating Multimodal Genomic Data and Pathway Knowledge

bioinformatics more details view paper
  • Downloaded 185 times
  • Download rankings, all-time:
    • Site-wide: 94,263 out of 118,896
    • In bioinformatics: 8,203 out of 9,616
  • Year to date:
    • Site-wide: 47,128 out of 118,896
  • Since beginning of last month:
    • Site-wide: 23,442 out of 118,896

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