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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 55,339 bioRxiv papers from 255,259 authors.

Author: William J. Greenleaf

Rankings

  • All-time downloads: 53,770 (rank: 203 out of 255,259)
  • Categories:
    • biochemistry: 2,291 (rank: 169 out of 9,112)
    • bioinformatics: 6,062 (rank: 662 out of 22,194)
    • biophysics: 2,232 (rank: 415 out of 9,314)
    • developmental biology: 2,407 (rank: 226 (tie) out of 8,787)
    • genomics: 38,097 (rank: 126 out of 28,597)
    • molecular biology: 2,681 (rank: 264 out of 10,762)

Downloads per author, site-wide

Preprints

A single cell framework for multi-omic analysis of disease identifies malignant regulatory signatures in mixed phenotype acute leukemia

genomics more details view paper

No bioRxiv download data for this paper yet.

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

genomics more details view paper
  • Downloaded 4,742 times
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    • Site-wide: 373 out of 55,339
    • In genomics: 96 out of 3,919
  • Year to date:
    • Site-wide: 40 out of 55,339
  • Since beginning of last month:
    • Site-wide: 283 out of 55,339

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts

genomics more details view paper
  • Downloaded 4,004 times
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    • In genomics: 141 out of 3,919
  • Year to date:
    • Site-wide: 15,508 out of 55,339
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    • Site-wide: 17,174 out of 55,339

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

genomics more details view paper
  • Downloaded 3,577 times
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    • In genomics: 173 out of 3,919
  • Year to date:
    • Site-wide: 3,651 out of 55,339
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    • Site-wide: 6,697 out of 55,339

Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks

genomics more details view paper
  • Downloaded 3,475 times
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    • In genomics: 185 out of 3,919
  • Year to date:
    • Site-wide: 960 out of 55,339
  • Since beginning of last month:
    • Site-wide: 9,076 out of 55,339

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,261 times
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    • Site-wide: 789 out of 55,339
    • In bioinformatics: 158 out of 5,719
  • Year to date:
    • Site-wide: 18,885 out of 55,339
  • Since beginning of last month:
    • Site-wide: 15,895 out of 55,339

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

genomics more details view paper
  • Downloaded 2,797 times
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    • Site-wide: 1,054 out of 55,339
    • In genomics: 251 out of 3,919
  • Year to date:
    • Site-wide: 15,500 out of 55,339
  • Since beginning of last month:
    • Site-wide: 15,198 out of 55,339

High-throughput chromatin accessibility profiling at single-cell resolution

genomics more details view paper
  • Downloaded 2,722 times
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    • Site-wide: 1,112 out of 55,339
    • In genomics: 259 out of 3,919
  • Year to date:
    • Site-wide: 2,591 out of 55,339
  • Since beginning of last month:
    • Site-wide: 9,670 out of 55,339

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

genomics more details view paper
  • Downloaded 2,609 times
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    • Site-wide: 1,192 out of 55,339
    • In genomics: 278 out of 3,919
  • Year to date:
    • Site-wide: 8,451 out of 55,339
  • Since beginning of last month:
    • Site-wide: 1,773 out of 55,339

Landscape of stimulation-responsive chromatin across diverse human immune cells

genomics more details view paper
  • Downloaded 2,514 times
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    • In genomics: 297 out of 3,919
  • Year to date:
    • Site-wide: 1,097 out of 55,339
  • Since beginning of last month:
    • Site-wide: 5,458 out of 55,339

HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

genomics more details view paper
  • Downloaded 2,428 times
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    • Site-wide: 1,345 out of 55,339
    • In genomics: 315 out of 3,919
  • Year to date:
    • Site-wide: 31,625 out of 55,339
  • Since beginning of last month:
    • Site-wide: 44,758 out of 55,339

chromVAR: Inferring transcription factor variation from single-cell epigenomic data

bioinformatics more details view paper
  • Downloaded 2,415 times
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    • Site-wide: 1,364 out of 55,339
    • In bioinformatics: 279 out of 5,719
  • Year to date:
    • Site-wide: 27,967 out of 55,339
  • Since beginning of last month:
    • Site-wide: 28,665 out of 55,339

Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

molecular biology more details view paper
  • Downloaded 2,389 times
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    • Site-wide: 1,398 out of 55,339
    • In molecular biology: 35 out of 1,673
  • Year to date:
    • Site-wide: 2,159 out of 55,339
  • Since beginning of last month:
    • Site-wide: 6,297 out of 55,339

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

genomics more details view paper
  • Downloaded 2,367 times
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    • Site-wide: 1,427 out of 55,339
    • In genomics: 334 out of 3,919
  • Year to date:
    • Site-wide: 41,740 out of 55,339
  • Since beginning of last month:
    • Site-wide: 52,417 out of 55,339

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

genomics more details view paper
  • Downloaded 1,941 times
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    • Site-wide: 2,008 out of 55,339
    • In genomics: 434 out of 3,919
  • Year to date:
    • Site-wide: 473 out of 55,339
  • Since beginning of last month:
    • Site-wide: 2,731 out of 55,339

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity

genomics more details view paper
  • Downloaded 1,904 times
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    • Site-wide: 2,067 out of 55,339
    • In genomics: 443 out of 3,919
  • Year to date:
    • Site-wide: 6,113 out of 55,339
  • Since beginning of last month:
    • Site-wide: 11,278 out of 55,339

High-throughput biochemical profiling reveals Cas9 off-target binding and unbinding heterogeneity

biochemistry more details view paper
  • Downloaded 1,750 times
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    • Site-wide: 2,385 out of 55,339
    • In biochemistry: 37 out of 1,569
  • Year to date:
    • Site-wide: 40,985 out of 55,339
  • Since beginning of last month:
    • Site-wide: 20,611 out of 55,339

High-resolution mapping of cancer cell networks using co-functional interactions

genomics more details view paper
  • Downloaded 1,734 times
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    • Site-wide: 2,426 out of 55,339
    • In genomics: 503 out of 3,919
  • Year to date:
    • Site-wide: 21,567 out of 55,339
  • Since beginning of last month:
    • Site-wide: 43,237 out of 55,339

High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

developmental biology more details view paper
  • Downloaded 1,569 times
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    • Site-wide: 2,868 out of 55,339
    • In developmental biology: 42 out of 1,632
  • Year to date:
    • Site-wide: 15,006 out of 55,339
  • Since beginning of last month:
    • Site-wide: 11,492 out of 55,339

Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements

genomics more details view paper
  • Downloaded 1,283 times
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    • Site-wide: 4,013 out of 55,339
    • In genomics: 732 out of 3,919
  • Year to date:
    • Site-wide: 452 out of 55,339
  • Since beginning of last month:
    • Site-wide: 5,363 out of 55,339

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,070 times
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    • Site-wide: 5,341 out of 55,339
    • In biophysics: 143 out of 2,337
  • Year to date:
    • Site-wide: 7,439 out of 55,339
  • Since beginning of last month:
    • Site-wide: 7,955 out of 55,339

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

developmental biology more details view paper
  • Downloaded 838 times
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    • Site-wide: 7,910 out of 55,339
    • In developmental biology: 176 out of 1,632
  • Year to date:
    • Site-wide: 20,991 out of 55,339
  • Since beginning of last month:
    • Site-wide: 17,329 out of 55,339

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 592 times
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    • Site-wide: 12,930 out of 55,339
    • In biophysics: 405 out of 2,337
  • Year to date:
    • Site-wide: 7,497 out of 55,339
  • Since beginning of last month:
    • Site-wide: 11,703 out of 55,339

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 541 times
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    • Site-wide: 14,595 out of 55,339
    • In biochemistry: 306 out of 1,569
  • Year to date:
    • Site-wide: 12,356 out of 55,339
  • Since beginning of last month:
    • Site-wide: 6,964 out of 55,339

Nonparametric analysis of contributions to variance in genomics and epigenomics data

bioinformatics more details view paper
  • Downloaded 386 times
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    • Site-wide: 21,594 out of 55,339
    • In bioinformatics: 3,135 out of 5,719
  • Year to date:
    • Site-wide: 37,413 out of 55,339
  • Since beginning of last month:
    • Site-wide: 21,150 out of 55,339

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 355 times
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    • Site-wide: 23,481 out of 55,339
    • In biophysics: 894 out of 2,337
  • Year to date:
    • Site-wide: 4,665 out of 55,339
  • Since beginning of last month:
    • Site-wide: 7,538 out of 55,339

INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

molecular biology more details view paper
  • Downloaded 292 times
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    • Site-wide: 28,169 out of 55,339
    • In molecular biology: 798 out of 1,673
  • Year to date:
    • Site-wide: 50,424 out of 55,339
  • Since beginning of last month:
    • Site-wide: 40,692 out of 55,339

Automated design of highly diverse riboswitches

biophysics more details view paper
  • Downloaded 215 times
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    • Site-wide: 35,294 out of 55,339
    • In biophysics: 1,480 out of 2,337
  • Year to date:
    • Site-wide: 10,195 out of 55,339
  • Since beginning of last month:
    • Site-wide: 11,665 out of 55,339

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