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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 64,882 bioRxiv papers from 287,592 authors.

Author: William J. Greenleaf

Rankings

  • All-time downloads: 69,939 (rank: 167 out of 287,592)
  • Categories:
    • biochemistry: 2,387 (rank: 208 out of 11,045)
    • bioinformatics: 6,224 (rank: 747 (tie) out of 24,993)
    • biophysics: 2,371 (rank: 446 out of 11,245)
    • developmental biology: 2,500 (rank: 265 (tie) out of 10,746)
    • genomics: 52,970 (rank: 105 out of 32,642)
    • molecular biology: 3,487 (rank: 239 out of 13,460)

Downloads per author, site-wide

Preprints

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

genomics more details view paper
  • Downloaded 8,541 times
  • Download rankings, all-time:
    • Site-wide: 154 out of 64,882
    • In genomics: 47 out of 4,438
  • Year to date:
    • Site-wide: 26 out of 64,882
  • Since beginning of last month:
    • Site-wide: 149 out of 64,882

Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation

genomics more details view paper
  • Downloaded 5,351 times
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    • Site-wide: 373 out of 64,882
    • In genomics: 94 out of 4,438
  • Year to date:
    • Site-wide: 14,948 out of 64,882
  • Since beginning of last month:
    • Site-wide: 23,716 out of 64,882

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts

genomics more details view paper
  • Downloaded 4,082 times
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    • Site-wide: 627 out of 64,882
    • In genomics: 165 out of 4,438
  • Year to date:
    • Site-wide: 18,021 out of 64,882
  • Since beginning of last month:
    • Site-wide: 18,625 out of 64,882

Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks

genomics more details view paper
  • Downloaded 3,831 times
  • Download rankings, all-time:
    • Site-wide: 720 out of 64,882
    • In genomics: 187 out of 4,438
  • Year to date:
    • Site-wide: 1,148 out of 64,882
  • Since beginning of last month:
    • Site-wide: 5,475 out of 64,882

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

genomics more details view paper
  • Downloaded 3,782 times
  • Download rankings, all-time:
    • Site-wide: 732 out of 64,882
    • In genomics: 189 out of 4,438
  • Year to date:
    • Site-wide: 3,911 out of 64,882
  • Since beginning of last month:
    • Site-wide: 10,892 out of 64,882

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,314 times
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    • Site-wide: 926 out of 64,882
    • In bioinformatics: 184 out of 6,419
  • Year to date:
    • Site-wide: 24,434 out of 64,882
  • Since beginning of last month:
    • Site-wide: 38,775 out of 64,882

Landscape of stimulation-responsive chromatin across diverse human immune cells

genomics more details view paper
  • Downloaded 3,155 times
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    • Site-wide: 1,015 out of 64,882
    • In genomics: 249 out of 4,438
  • Year to date:
    • Site-wide: 810 out of 64,882
  • Since beginning of last month:
    • Site-wide: 1,420 out of 64,882

A single cell framework for multi-omic analysis of disease identifies malignant regulatory signatures in mixed phenotype acute leukemia

genomics more details view paper
  • Downloaded 3,073 times
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    • Site-wide: 1,077 out of 64,882
    • In genomics: 257 out of 4,438
  • Year to date:
    • Site-wide: 191 out of 64,882
  • Since beginning of last month:
    • Site-wide: 67 out of 64,882

High-throughput chromatin accessibility profiling at single-cell resolution

genomics more details view paper
  • Downloaded 2,903 times
  • Download rankings, all-time:
    • Site-wide: 1,205 out of 64,882
    • In genomics: 281 out of 4,438
  • Year to date:
    • Site-wide: 3,245 out of 64,882
  • Since beginning of last month:
    • Site-wide: 13,960 out of 64,882

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

genomics more details view paper
  • Downloaded 2,869 times
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    • Site-wide: 1,229 out of 64,882
    • In genomics: 285 out of 4,438
  • Year to date:
    • Site-wide: 18,690 out of 64,882
  • Since beginning of last month:
    • Site-wide: 18,941 out of 64,882

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

genomics more details view paper
  • Downloaded 2,689 times
  • Download rankings, all-time:
    • Site-wide: 1,372 out of 64,882
    • In genomics: 316 out of 4,438
  • Year to date:
    • Site-wide: 11,411 out of 64,882
  • Since beginning of last month:
    • Site-wide: 21,003 out of 64,882

Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

molecular biology more details view paper
  • Downloaded 2,619 times
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    • Site-wide: 1,420 out of 64,882
    • In molecular biology: 36 out of 2,050
  • Year to date:
    • Site-wide: 2,486 out of 64,882
  • Since beginning of last month:
    • Site-wide: 6,468 out of 64,882

HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

genomics more details view paper
  • Downloaded 2,502 times
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    • Site-wide: 1,548 out of 64,882
    • In genomics: 349 out of 4,438
  • Year to date:
    • Site-wide: 30,901 out of 64,882
  • Since beginning of last month:
    • Site-wide: 43,857 out of 64,882

chromVAR: Inferring transcription factor variation from single-cell epigenomic data

bioinformatics more details view paper
  • Downloaded 2,467 times
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    • Site-wide: 1,592 out of 64,882
    • In bioinformatics: 316 out of 6,419
  • Year to date:
    • Site-wide: 32,818 out of 64,882
  • Since beginning of last month:
    • Site-wide: 35,836 out of 64,882

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

genomics more details view paper
  • Downloaded 2,416 times
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    • Site-wide: 1,659 out of 64,882
    • In genomics: 370 out of 4,438
  • Year to date:
    • Site-wide: 45,083 out of 64,882
  • Since beginning of last month:
    • Site-wide: 39,572 out of 64,882

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

genomics more details view paper
  • Downloaded 2,332 times
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    • Site-wide: 1,763 out of 64,882
    • In genomics: 389 out of 4,438
  • Year to date:
    • Site-wide: 669 out of 64,882
  • Since beginning of last month:
    • Site-wide: 2,893 out of 64,882

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity

genomics more details view paper
  • Downloaded 2,073 times
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    • Site-wide: 2,187 out of 64,882
    • In genomics: 467 out of 4,438
  • Year to date:
    • Site-wide: 6,213 out of 64,882
  • Since beginning of last month:
    • Site-wide: 9,705 out of 64,882

High-resolution mapping of cancer cell networks using co-functional interactions

genomics more details view paper
  • Downloaded 1,781 times
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    • Site-wide: 2,819 out of 64,882
    • In genomics: 565 out of 4,438
  • Year to date:
    • Site-wide: 28,036 out of 64,882
  • Since beginning of last month:
    • Site-wide: 50,929 out of 64,882

High-throughput biochemical profiling reveals Cas9 off-target binding and unbinding heterogeneity

biochemistry more details view paper
  • Downloaded 1,777 times
  • Download rankings, all-time:
    • Site-wide: 2,836 out of 64,882
    • In biochemistry: 50 out of 1,896
  • Year to date:
    • Site-wide: 52,128 out of 64,882
  • Since beginning of last month:
    • Site-wide: 58,971 out of 64,882

High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

developmental biology more details view paper
  • Downloaded 1,629 times
  • Download rankings, all-time:
    • Site-wide: 3,272 out of 64,882
    • In developmental biology: 48 out of 1,920
  • Year to date:
    • Site-wide: 19,643 out of 64,882
  • Since beginning of last month:
    • Site-wide: 21,199 out of 64,882

Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements

genomics more details view paper
  • Downloaded 1,590 times
  • Download rankings, all-time:
    • Site-wide: 3,415 out of 64,882
    • In genomics: 654 out of 4,438
  • Year to date:
    • Site-wide: 718 out of 64,882
  • Since beginning of last month:
    • Site-wide: 8,226 out of 64,882

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,195 times
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    • Site-wide: 5,489 out of 64,882
    • In biophysics: 148 out of 2,741
  • Year to date:
    • Site-wide: 8,441 out of 64,882
  • Since beginning of last month:
    • Site-wide: 11,023 out of 64,882

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

developmental biology more details view paper
  • Downloaded 871 times
  • Download rankings, all-time:
    • Site-wide: 9,183 out of 64,882
    • In developmental biology: 199 out of 1,920
  • Year to date:
    • Site-wide: 30,226 out of 64,882
  • Since beginning of last month:
    • Site-wide: 56,055 out of 64,882

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 677 times
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    • Site-wide: 13,378 out of 64,882
    • In biophysics: 411 out of 2,741
  • Year to date:
    • Site-wide: 10,132 out of 64,882
  • Since beginning of last month:
    • Site-wide: 22,197 out of 64,882

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 610 times
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    • Site-wide: 15,462 out of 64,882
    • In biochemistry: 326 out of 1,896
  • Year to date:
    • Site-wide: 16,057 out of 64,882
  • Since beginning of last month:
    • Site-wide: 18,967 out of 64,882

Satb1 integrates DNA sequence, shape, motif density and torsional stress to differentially bind targets in nucleosome-dense regions.

molecular biology more details view paper
  • Downloaded 560 times
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    • Site-wide: 17,379 out of 64,882
    • In molecular biology: 506 out of 2,050
  • Year to date:
    • Site-wide: 11,279 out of 64,882
  • Since beginning of last month:
    • Site-wide: 34,352 out of 64,882

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 20,093 out of 64,882
    • In biophysics: 717 out of 2,741
  • Year to date:
    • Site-wide: 5,595 out of 64,882
  • Since beginning of last month:
    • Site-wide: 18,021 out of 64,882

Nonparametric analysis of contributions to variance in genomics and epigenomics data

bioinformatics more details view paper
  • Downloaded 443 times
  • Download rankings, all-time:
    • Site-wide: 23,163 out of 64,882
    • In bioinformatics: 3,288 out of 6,419
  • Year to date:
    • Site-wide: 38,995 out of 64,882
  • Since beginning of last month:
    • Site-wide: 35,115 out of 64,882

INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

molecular biology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 33,653 out of 64,882
    • In molecular biology: 975 out of 2,050
  • Year to date:
    • Site-wide: 62,506 out of 64,882
  • Since beginning of last month:
    • Site-wide: None out of 64,882

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