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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,222 bioRxiv papers from 267,718 authors.

Author: William J. Greenleaf

Rankings

  • All-time downloads: 66,598 (rank: 168 out of 267,718)
  • Categories:
    • biochemistry: 2,342 (rank: 187 out of 10,238)
    • bioinformatics: 6,168 (rank: 710 out of 23,839)
    • biophysics: 2,247 (rank: 434 out of 10,428)
    • developmental biology: 2,454 (rank: 248 (tie) out of 10,008)
    • genomics: 49,998 (rank: 104 out of 31,222)
    • molecular biology: 3,389 (rank: 199 out of 12,047)

Downloads per author, site-wide

Preprints

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

genomics more details view paper
  • Downloaded 7,700 times
  • Download rankings, all-time:
    • Site-wide: 168 out of 60,222
    • In genomics: 51 out of 4,168
  • Year to date:
    • Site-wide: 25 out of 60,222
  • Since beginning of last month:
    • Site-wide: 37 out of 60,222

Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation

genomics more details view paper
  • Downloaded 5,322 times
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    • Site-wide: 344 out of 60,222
    • In genomics: 90 out of 4,168
  • Year to date:
    • Site-wide: 13,804 out of 60,222
  • Since beginning of last month:
    • Site-wide: 18,152 out of 60,222

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts

genomics more details view paper
  • Downloaded 4,052 times
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    • Site-wide: 587 out of 60,222
    • In genomics: 157 out of 4,168
  • Year to date:
    • Site-wide: 17,004 out of 60,222
  • Since beginning of last month:
    • Site-wide: 23,463 out of 60,222

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

genomics more details view paper
  • Downloaded 3,708 times
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    • Site-wide: 701 out of 60,222
    • In genomics: 181 out of 4,168
  • Year to date:
    • Site-wide: 3,736 out of 60,222
  • Since beginning of last month:
    • Site-wide: 5,042 out of 60,222

Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks

genomics more details view paper
  • Downloaded 3,707 times
  • Download rankings, all-time:
    • Site-wide: 702 out of 60,222
    • In genomics: 182 out of 4,168
  • Year to date:
    • Site-wide: 1,076 out of 60,222
  • Since beginning of last month:
    • Site-wide: 5,725 out of 60,222

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,297 times
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    • Site-wide: 871 out of 60,222
    • In bioinformatics: 174 out of 6,078
  • Year to date:
    • Site-wide: 21,731 out of 60,222
  • Since beginning of last month:
    • Site-wide: 22,911 out of 60,222

Landscape of stimulation-responsive chromatin across diverse human immune cells

genomics more details view paper
  • Downloaded 2,935 times
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    • Site-wide: 1,084 out of 60,222
    • In genomics: 261 out of 4,168
  • Year to date:
    • Site-wide: 838 out of 60,222
  • Since beginning of last month:
    • Site-wide: 759 out of 60,222

High-throughput chromatin accessibility profiling at single-cell resolution

genomics more details view paper
  • Downloaded 2,850 times
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    • Site-wide: 1,150 out of 60,222
    • In genomics: 271 out of 4,168
  • Year to date:
    • Site-wide: 2,869 out of 60,222
  • Since beginning of last month:
    • Site-wide: 6,163 out of 60,222

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

genomics more details view paper
  • Downloaded 2,837 times
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    • Site-wide: 1,156 out of 60,222
    • In genomics: 272 out of 4,168
  • Year to date:
    • Site-wide: 17,942 out of 60,222
  • Since beginning of last month:
    • Site-wide: 23,848 out of 60,222

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

genomics more details view paper
  • Downloaded 2,658 times
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    • Site-wide: 1,293 out of 60,222
    • In genomics: 299 out of 4,168
  • Year to date:
    • Site-wide: 10,279 out of 60,222
  • Since beginning of last month:
    • Site-wide: 28,888 out of 60,222

Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

molecular biology more details view paper
  • Downloaded 2,543 times
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    • Site-wide: 1,391 out of 60,222
    • In molecular biology: 34 out of 1,850
  • Year to date:
    • Site-wide: 2,282 out of 60,222
  • Since beginning of last month:
    • Site-wide: 3,124 out of 60,222

HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

genomics more details view paper
  • Downloaded 2,484 times
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    • Site-wide: 1,449 out of 60,222
    • In genomics: 337 out of 4,168
  • Year to date:
    • Site-wide: 28,285 out of 60,222
  • Since beginning of last month:
    • Site-wide: 20,139 out of 60,222

chromVAR: Inferring transcription factor variation from single-cell epigenomic data

bioinformatics more details view paper
  • Downloaded 2,452 times
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    • Site-wide: 1,491 out of 60,222
    • In bioinformatics: 297 out of 6,078
  • Year to date:
    • Site-wide: 29,626 out of 60,222
  • Since beginning of last month:
    • Site-wide: 33,504 out of 60,222

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

genomics more details view paper
  • Downloaded 2,400 times
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    • Site-wide: 1,555 out of 60,222
    • In genomics: 354 out of 4,168
  • Year to date:
    • Site-wide: 42,406 out of 60,222
  • Since beginning of last month:
    • Site-wide: 54,802 out of 60,222

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

genomics more details view paper
  • Downloaded 2,136 times
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    • Site-wide: 1,906 out of 60,222
    • In genomics: 419 out of 4,168
  • Year to date:
    • Site-wide: 638 out of 60,222
  • Since beginning of last month:
    • Site-wide: 3,990 out of 60,222

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity

genomics more details view paper
  • Downloaded 2,012 times
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    • Site-wide: 2,127 out of 60,222
    • In genomics: 457 out of 4,168
  • Year to date:
    • Site-wide: 6,000 out of 60,222
  • Since beginning of last month:
    • Site-wide: 8,482 out of 60,222

A single cell framework for multi-omic analysis of disease identifies malignant regulatory signatures in mixed phenotype acute leukemia

genomics more details view paper
  • Downloaded 1,962 times
  • Download rankings, all-time:
    • Site-wide: 2,227 out of 60,222
    • In genomics: 475 out of 4,168
  • Year to date:
    • Site-wide: 356 out of 60,222
  • Since beginning of last month:
    • Site-wide: 215 out of 60,222

High-throughput biochemical profiling reveals Cas9 off-target binding and unbinding heterogeneity

biochemistry more details view paper
  • Downloaded 1,769 times
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    • Site-wide: 2,660 out of 60,222
    • In biochemistry: 45 out of 1,746
  • Year to date:
    • Site-wide: 46,543 out of 60,222
  • Since beginning of last month:
    • Site-wide: 42,438 out of 60,222

High-resolution mapping of cancer cell networks using co-functional interactions

genomics more details view paper
  • Downloaded 1,765 times
  • Download rankings, all-time:
    • Site-wide: 2,669 out of 60,222
    • In genomics: 543 out of 4,168
  • Year to date:
    • Site-wide: 25,044 out of 60,222
  • Since beginning of last month:
    • Site-wide: 38,432 out of 60,222

High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

developmental biology more details view paper
  • Downloaded 1,594 times
  • Download rankings, all-time:
    • Site-wide: 3,153 out of 60,222
    • In developmental biology: 47 out of 1,790
  • Year to date:
    • Site-wide: 19,302 out of 60,222
  • Since beginning of last month:
    • Site-wide: 26,478 out of 60,222

Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements

genomics more details view paper
  • Downloaded 1,470 times
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    • Site-wide: 3,617 out of 60,222
    • In genomics: 678 out of 4,168
  • Year to date:
    • Site-wide: 625 out of 60,222
  • Since beginning of last month:
    • Site-wide: 3,440 out of 60,222

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,140 times
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    • Site-wide: 5,492 out of 60,222
    • In biophysics: 148 out of 2,550
  • Year to date:
    • Site-wide: 8,271 out of 60,222
  • Since beginning of last month:
    • Site-wide: 12,215 out of 60,222

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

developmental biology more details view paper
  • Downloaded 860 times
  • Download rankings, all-time:
    • Site-wide: 8,640 out of 60,222
    • In developmental biology: 191 out of 1,790
  • Year to date:
    • Site-wide: 26,251 out of 60,222
  • Since beginning of last month:
    • Site-wide: 30,180 out of 60,222

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 649 times
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    • Site-wide: 13,044 out of 60,222
    • In biophysics: 402 out of 2,550
  • Year to date:
    • Site-wide: 8,902 out of 60,222
  • Since beginning of last month:
    • Site-wide: 18,002 out of 60,222

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 573 times
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    • Site-wide: 15,459 out of 60,222
    • In biochemistry: 320 out of 1,746
  • Year to date:
    • Site-wide: 15,629 out of 60,222
  • Since beginning of last month:
    • Site-wide: 19,432 out of 60,222

Satb1 integrates DNA sequence, shape, motif density and torsional stress to differentially bind targets in nucleosome-dense regions.

molecular biology more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 16,707 out of 60,222
    • In molecular biology: 478 out of 1,850
  • Year to date:
    • Site-wide: 9,646 out of 60,222
  • Since beginning of last month:
    • Site-wide: 15,888 out of 60,222

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 20,424 out of 60,222
    • In biophysics: 734 out of 2,550
  • Year to date:
    • Site-wide: 4,957 out of 60,222
  • Since beginning of last month:
    • Site-wide: 4,187 out of 60,222

Nonparametric analysis of contributions to variance in genomics and epigenomics data

bioinformatics more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 22,570 out of 60,222
    • In bioinformatics: 3,220 out of 6,078
  • Year to date:
    • Site-wide: 38,521 out of 60,222
  • Since beginning of last month:
    • Site-wide: 28,330 out of 60,222

INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

molecular biology more details view paper
  • Downloaded 306 times
  • Download rankings, all-time:
    • Site-wide: 30,963 out of 60,222
    • In molecular biology: 875 out of 1,850
  • Year to date:
    • Site-wide: 56,353 out of 60,222
  • Since beginning of last month:
    • Site-wide: 47,232 out of 60,222

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