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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 50,150 bioRxiv papers from 233,741 authors.

Author: William J. Greenleaf

Rankings

  • All-time downloads: 51,502 (rank: 209 out of 233,741)
  • Categories:
    • biochemistry: 2,207 (rank: 141 out of 7,979)
    • bioinformatics: 5,991 (rank: 622 out of 20,652)
    • biophysics: 2,002 (rank: 406 out of 8,475)
    • developmental biology: 2,328 (rank: 198 (tie) out of 8,052)
    • genomics: 36,375 (rank: 127 out of 27,292)
    • molecular biology: 2,599 (rank: 234 out of 9,897)

Downloads per author, site-wide

Preprints

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts

genomics more details view paper
  • Downloaded 3,971 times
  • Download rankings, all-time:
    • Site-wide: 498 out of 50,150
    • In genomics: 135 out of 3,634
  • Year to date:
    • Site-wide: 13,992 out of 50,150
  • Since beginning of last month:
    • Site-wide: 19,467 out of 50,150

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

genomics more details view paper
  • Downloaded 3,925 times
  • Download rankings, all-time:
    • Site-wide: 509 out of 50,150
    • In genomics: 140 out of 3,634
  • Year to date:
    • Site-wide: 35 out of 50,150
  • Since beginning of last month:
    • Site-wide: 4 out of 50,150

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

genomics more details view paper
  • Downloaded 3,485 times
  • Download rankings, all-time:
    • Site-wide: 642 out of 50,150
    • In genomics: 175 out of 3,634
  • Year to date:
    • Site-wide: 3,632 out of 50,150
  • Since beginning of last month:
    • Site-wide: 4,618 out of 50,150

Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks

genomics more details view paper
  • Downloaded 3,399 times
  • Download rankings, all-time:
    • Site-wide: 675 out of 50,150
    • In genomics: 182 out of 3,634
  • Year to date:
    • Site-wide: 703 out of 50,150
  • Since beginning of last month:
    • Site-wide: 2,091 out of 50,150

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,229 times
  • Download rankings, all-time:
    • Site-wide: 739 out of 50,150
    • In bioinformatics: 149 out of 5,266
  • Year to date:
    • Site-wide: 17,697 out of 50,150
  • Since beginning of last month:
    • Site-wide: 15,472 out of 50,150

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

genomics more details view paper
  • Downloaded 2,756 times
  • Download rankings, all-time:
    • Site-wide: 997 out of 50,150
    • In genomics: 243 out of 3,634
  • Year to date:
    • Site-wide: 15,184 out of 50,150
  • Since beginning of last month:
    • Site-wide: 16,405 out of 50,150

High-throughput chromatin accessibility profiling at single-cell resolution

genomics more details view paper
  • Downloaded 2,652 times
  • Download rankings, all-time:
    • Site-wide: 1,059 out of 50,150
    • In genomics: 253 out of 3,634
  • Year to date:
    • Site-wide: 2,174 out of 50,150
  • Since beginning of last month:
    • Site-wide: 2,715 out of 50,150

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

genomics more details view paper
  • Downloaded 2,475 times
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    • Site-wide: 1,194 out of 50,150
    • In genomics: 284 out of 3,634
  • Year to date:
    • Site-wide: 16,202 out of 50,150
  • Since beginning of last month:
    • Site-wide: 17,514 out of 50,150

HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

genomics more details view paper
  • Downloaded 2,414 times
  • Download rankings, all-time:
    • Site-wide: 1,251 out of 50,150
    • In genomics: 296 out of 3,634
  • Year to date:
    • Site-wide: 26,852 out of 50,150
  • Since beginning of last month:
    • Site-wide: 25,399 out of 50,150

Landscape of stimulation-responsive chromatin across diverse human immune cells

genomics more details view paper
  • Downloaded 2,402 times
  • Download rankings, all-time:
    • Site-wide: 1,262 out of 50,150
    • In genomics: 299 out of 3,634
  • Year to date:
    • Site-wide: 909 out of 50,150
  • Since beginning of last month:
    • Site-wide: 890 out of 50,150

chromVAR: Inferring transcription factor variation from single-cell epigenomic data

bioinformatics more details view paper
  • Downloaded 2,400 times
  • Download rankings, all-time:
    • Site-wide: 1,268 out of 50,150
    • In bioinformatics: 259 out of 5,266
  • Year to date:
    • Site-wide: 23,382 out of 50,150
  • Since beginning of last month:
    • Site-wide: 30,411 out of 50,150

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

genomics more details view paper
  • Downloaded 2,364 times
  • Download rankings, all-time:
    • Site-wide: 1,313 out of 50,150
    • In genomics: 310 out of 3,634
  • Year to date:
    • Site-wide: 33,108 out of 50,150
  • Since beginning of last month:
    • Site-wide: 18,864 out of 50,150

Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

molecular biology more details view paper
  • Downloaded 2,316 times
  • Download rankings, all-time:
    • Site-wide: 1,368 out of 50,150
    • In molecular biology: 34 out of 1,497
  • Year to date:
    • Site-wide: 1,770 out of 50,150
  • Since beginning of last month:
    • Site-wide: 3,677 out of 50,150

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity

genomics more details view paper
  • Downloaded 1,843 times
  • Download rankings, all-time:
    • Site-wide: 2,006 out of 50,150
    • In genomics: 442 out of 3,634
  • Year to date:
    • Site-wide: 5,691 out of 50,150
  • Since beginning of last month:
    • Site-wide: 6,470 out of 50,150

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

genomics more details view paper
  • Downloaded 1,780 times
  • Download rankings, all-time:
    • Site-wide: 2,139 out of 50,150
    • In genomics: 464 out of 3,634
  • Year to date:
    • Site-wide: 390 out of 50,150
  • Since beginning of last month:
    • Site-wide: 844 out of 50,150

High-throughput biochemical profiling reveals Cas9 off-target binding and unbinding heterogeneity

biochemistry more details view paper
  • Downloaded 1,724 times
  • Download rankings, all-time:
    • Site-wide: 2,252 out of 50,150
    • In biochemistry: 31 out of 1,393
  • Year to date:
    • Site-wide: 44,021 out of 50,150
  • Since beginning of last month:
    • Site-wide: 43,902 out of 50,150

High-resolution mapping of cancer cell networks using co-functional interactions

genomics more details view paper
  • Downloaded 1,713 times
  • Download rankings, all-time:
    • Site-wide: 2,275 out of 50,150
    • In genomics: 484 out of 3,634
  • Year to date:
    • Site-wide: 18,459 out of 50,150
  • Since beginning of last month:
    • Site-wide: 23,033 out of 50,150

High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

developmental biology more details view paper
  • Downloaded 1,528 times
  • Download rankings, all-time:
    • Site-wide: 2,765 out of 50,150
    • In developmental biology: 39 out of 1,469
  • Year to date:
    • Site-wide: 14,556 out of 50,150
  • Since beginning of last month:
    • Site-wide: 17,020 out of 50,150

Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements

genomics more details view paper
  • Downloaded 1,196 times
  • Download rankings, all-time:
    • Site-wide: 4,115 out of 50,150
    • In genomics: 757 out of 3,634
  • Year to date:
    • Site-wide: 332 out of 50,150
  • Since beginning of last month:
    • Site-wide: 1,587 out of 50,150

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

biophysics more details view paper
  • Downloaded 1,007 times
  • Download rankings, all-time:
    • Site-wide: 5,422 out of 50,150
    • In biophysics: 141 out of 2,112
  • Year to date:
    • Site-wide: 7,396 out of 50,150
  • Since beginning of last month:
    • Site-wide: 8,928 out of 50,150

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

developmental biology more details view paper
  • Downloaded 800 times
  • Download rankings, all-time:
    • Site-wide: 7,728 out of 50,150
    • In developmental biology: 161 out of 1,469
  • Year to date:
    • Site-wide: 21,577 out of 50,150
  • Since beginning of last month:
    • Site-wide: 28,203 out of 50,150

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

biophysics more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 12,885 out of 50,150
    • In biophysics: 399 out of 2,112
  • Year to date:
    • Site-wide: 6,219 out of 50,150
  • Since beginning of last month:
    • Site-wide: 13,091 out of 50,150

A quantitative and predictive model for RNA binding by human Pumilio proteins

biochemistry more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 15,331 out of 50,150
    • In biochemistry: 315 out of 1,393
  • Year to date:
    • Site-wide: 13,335 out of 50,150
  • Since beginning of last month:
    • Site-wide: 12,147 out of 50,150

Nonparametric analysis of contributions to variance in genomics and epigenomics data

bioinformatics more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 20,953 out of 50,150
    • In bioinformatics: 2,997 out of 5,266
  • Year to date:
    • Site-wide: 37,772 out of 50,150
  • Since beginning of last month:
    • Site-wide: 34,859 out of 50,150

INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

molecular biology more details view paper
  • Downloaded 283 times
  • Download rankings, all-time:
    • Site-wide: 26,208 out of 50,150
    • In molecular biology: 711 out of 1,497
  • Year to date:
    • Site-wide: 46,252 out of 50,150
  • Since beginning of last month:
    • Site-wide: 44,965 out of 50,150

Quantitative high-throughput tests of ubiquitous RNA secondary structure prediction algorithms via RNA/protein binding

biophysics more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 27,299 out of 50,150
    • In biophysics: 1,048 out of 2,112
  • Year to date:
    • Site-wide: 4,779 out of 50,150
  • Since beginning of last month:
    • Site-wide: 4,686 out of 50,150

Automated design of highly diverse riboswitches

biophysics more details view paper
  • Downloaded 173 times
  • Download rankings, all-time:
    • Site-wide: 36,373 out of 50,150
    • In biophysics: 1,501 out of 2,112
  • Year to date:
    • Site-wide: 9,264 out of 50,150
  • Since beginning of last month:
    • Site-wide: 1,917 out of 50,150

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