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Author: Jason D Buenrostro

Rankings

  • All-time downloads: 47,312 (rank: 815 out of 404,161)
  • Categories:
    • bioinformatics: 7,340 (rank: 983 out of 34,272)
    • developmental biology: 2,718 (rank: 550 (tie) out of 15,768)
    • genetics: 7,903 (rank: 1,995 out of 36,792)
    • genomics: 29,351 (rank: 262 out of 42,763)

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Preprints

Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation

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    • Site-wide: 22,671 out of 94,912

Chromatin potential identified by shared single cell profiling of RNA and chromatin

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    • In genomics: 148 out of 5,955
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    • Site-wide: 80 out of 94,912

Droplet-based combinatorial indexing for massive scale single-cell epigenomics

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Assessment of computational methods for the analysis of single-cell ATAC-seq data

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Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

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    • Site-wide: 15,006 out of 94,912

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
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Interrogation of human hematopoiesis at single-cell and single-variant resolution

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Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

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chromVAR: Inferring transcription factor variation from single-cell epigenomic data

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Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

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    • Site-wide: 72,053 out of 94,912

Inference and effects of barcode multiplets in droplet-based single-cell assays

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    • In genomics: 571 out of 5,955
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AtacWorks: A deep convolutional neural network toolkit for epigenomics

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High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

developmental biology more details view paper
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    • Site-wide: 79,038 out of 94,912

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

developmental biology more details view paper
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    • In developmental biology: 281 out of 2,812
  • Year to date:
    • Site-wide: 72,454 out of 94,912
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    • Site-wide: 90,010 out of 94,912

Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms

genetics more details view paper
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    • Site-wide: 19,790 out of 94,912
    • In genetics: 1,241 out of 4,824
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    • Site-wide: 64,852 out of 94,912

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