Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,793 bioRxiv papers from 266,023 authors.

Author: John D. Chodera

Rankings

  • All-time downloads: 19,908 (rank: 1,114 out of 266,023)
  • Categories:
    • biochemistry: 2,538 (rank: 157 out of 9,687)
    • bioinformatics: 1,239 (rank: 5,870 (tie) out of 23,176)
    • biophysics: 13,056 (rank: 5 out of 9,938)
    • cancer biology: 1,834 (rank: 974 (tie) out of 15,416)
    • pharmacology and toxicology: 1,241 (rank: 139 (tie) out of 3,027)

Downloads per author, site-wide

Preprints

Open Force Field Consortium: Escaping atom types using direct chemical perception with SMIRNOFF v0.1

biophysics more details view paper
  • Downloaded 2,522 times
  • Download rankings, all-time:
    • Site-wide: 1,369 out of 57,793
    • In biophysics: 31 out of 2,450
  • Year to date:
    • Site-wide: 1,133 out of 57,793
  • Since beginning of last month:
    • Site-wide: 2,038 out of 57,793

A simple method for automated equilibration detection in molecular simulations

biophysics more details view paper
  • Downloaded 2,127 times
  • Download rankings, all-time:
    • Site-wide: 1,846 out of 57,793
    • In biophysics: 46 out of 2,450
  • Year to date:
    • Site-wide: 13,865 out of 57,793
  • Since beginning of last month:
    • Site-wide: 12,448 out of 57,793

An open library of human kinase domain constructs for automated bacterial expression

biochemistry more details view paper
  • Downloaded 1,716 times
  • Download rankings, all-time:
    • Site-wide: 2,690 out of 57,793
    • In biochemistry: 44 out of 1,659
  • Year to date:
    • Site-wide: 15,907 out of 57,793
  • Since beginning of last month:
    • Site-wide: 13,838 out of 57,793

The Dynamic Conformational Landscapes of the Protein Methyltransferase SETD8

biophysics more details view paper
  • Downloaded 1,555 times
  • Download rankings, all-time:
    • Site-wide: 3,144 out of 57,793
    • In biophysics: 80 out of 2,450
  • Year to date:
    • Site-wide: 4,482 out of 57,793
  • Since beginning of last month:
    • Site-wide: 14,316 out of 57,793

Approaches for calculating solvation free energies and enthalpies demonstrated with an update of the FreeSolv database

pharmacology and toxicology more details view paper
  • Downloaded 1,241 times
  • Download rankings, all-time:
    • Site-wide: 4,568 out of 57,793
    • In pharmacology and toxicology: 18 out of 467
  • Year to date:
    • Site-wide: 18,000 out of 57,793
  • Since beginning of last month:
    • Site-wide: 11,576 out of 57,793

Ensembler: Enabling high-throughput molecular simulations at the superfamily scale

bioinformatics more details view paper
  • Downloaded 1,239 times
  • Download rankings, all-time:
    • Site-wide: 4,582 out of 57,793
    • In bioinformatics: 911 out of 5,897
  • Year to date:
    • Site-wide: 36,753 out of 57,793
  • Since beginning of last month:
    • Site-wide: 33,221 out of 57,793

OpenMM 7: Rapid Development of High Performance Algorithms for Molecular Dynamics

biophysics more details view paper
  • Downloaded 1,218 times
  • Download rankings, all-time:
    • Site-wide: 4,701 out of 57,793
    • In biophysics: 126 out of 2,450
  • Year to date:
    • Site-wide: 26,570 out of 57,793
  • Since beginning of last month:
    • Site-wide: 19,629 out of 57,793

Quantifying configuration-sampling error in Langevin simulations of complex molecular systems

biophysics more details view paper
  • Downloaded 1,209 times
  • Download rankings, all-time:
    • Site-wide: 4,751 out of 57,793
    • In biophysics: 128 out of 2,450
  • Year to date:
    • Site-wide: 27,710 out of 57,793
  • Since beginning of last month:
    • Site-wide: 18,143 out of 57,793

Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia

cancer biology more details view paper
  • Downloaded 1,006 times
  • Download rankings, all-time:
    • Site-wide: 6,454 out of 57,793
    • In cancer biology: 168 out of 1,870
  • Year to date:
    • Site-wide: 4,982 out of 57,793
  • Since beginning of last month:
    • Site-wide: 11,294 out of 57,793

Biomolecular simulations under realistic macroscopic salt conditions

biophysics more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 7,177 out of 57,793
    • In biophysics: 208 out of 2,450
  • Year to date:
    • Site-wide: 17,364 out of 57,793
  • Since beginning of last month:
    • Site-wide: 13,581 out of 57,793

Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

cancer biology more details view paper
  • Downloaded 828 times
  • Download rankings, all-time:
    • Site-wide: 8,786 out of 57,793
    • In cancer biology: 244 out of 1,870
  • Year to date:
    • Site-wide: 17,008 out of 57,793
  • Since beginning of last month:
    • Site-wide: 24,092 out of 57,793

Avoiding accuracy-limiting pitfalls in the study of protein-ligand interactions with isothermal titration calorimetry

biochemistry more details view paper
  • Downloaded 822 times
  • Download rankings, all-time:
    • Site-wide: 8,899 out of 57,793
    • In biochemistry: 164 out of 1,659
  • Year to date:
    • Site-wide: 20,475 out of 57,793
  • Since beginning of last month:
    • Site-wide: 17,234 out of 57,793

OpenPathSampling: A Python framework for path sampling simulations. I. Basics

biophysics more details view paper
  • Downloaded 704 times
  • Download rankings, all-time:
    • Site-wide: 11,131 out of 57,793
    • In biophysics: 339 out of 2,450
  • Year to date:
    • Site-wide: 8,911 out of 57,793
  • Since beginning of last month:
    • Site-wide: 8,239 out of 57,793

Measuring experimental cyclohexane-water distribution coefficients for the SAMPL5 challenge

biophysics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 11,564 out of 57,793
    • In biophysics: 353 out of 2,450
  • Year to date:
    • Site-wide: 34,360 out of 57,793
  • Since beginning of last month:
    • Site-wide: 30,416 out of 57,793

Overview of the SAMPL6 host-guest binding affinity prediction challenge

biophysics more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 13,430 out of 57,793
    • In biophysics: 414 out of 2,450
  • Year to date:
    • Site-wide: 16,519 out of 57,793
  • Since beginning of last month:
    • Site-wide: 11,150 out of 57,793

pKa measurements for the SAMPL6 prediction challenge for a set of kinase inhibitor-like fragments

biophysics more details view paper
  • Downloaded 514 times
  • Download rankings, all-time:
    • Site-wide: 17,023 out of 57,793
    • In biophysics: 568 out of 2,450
  • Year to date:
    • Site-wide: 9,835 out of 57,793
  • Since beginning of last month:
    • Site-wide: 11,429 out of 57,793

Bayesian analysis of isothermal titration calorimetry for binding thermodynamics

biophysics more details view paper
  • Downloaded 428 times
  • Download rankings, all-time:
    • Site-wide: 21,138 out of 57,793
    • In biophysics: 763 out of 2,450
  • Year to date:
    • Site-wide: 41,131 out of 57,793
  • Since beginning of last month:
    • Site-wide: 26,036 out of 57,793

OpenPathSampling: A Python framework for path sampling simulations. II. Building and customizing path ensembles and sample schemes

biophysics more details view paper
  • Downloaded 270 times
  • Download rankings, all-time:
    • Site-wide: 32,797 out of 57,793
    • In biophysics: 1,286 out of 2,450
  • Year to date:
    • Site-wide: 38,198 out of 57,793
  • Since beginning of last month:
    • Site-wide: 47,776 out of 57,793

A dynamic mechanism for allosteric activation of Aurora kinase A by activation loop phosphorylation

biophysics more details view paper
  • Downloaded 269 times
  • Download rankings, all-time:
    • Site-wide: 32,838 out of 57,793
    • In biophysics: 1,291 out of 2,450
  • Year to date:
    • Site-wide: 48,941 out of 57,793
  • Since beginning of last month:
    • Site-wide: 46,804 out of 57,793

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News